CircRNA Information

General Information
circRNA Basic Information
CircID chr19:48955733|48956234
Strand +
CircType exon
Host Gene ENSG00000087088.18;
Algorism CIRI2;
Sequence CTCTCGGGGGGAGTCTGTGTCCACGGCGGCAATCATCCTCTGCAGCTCCATGTTACTGTCCAGTTCGTCCCCGATGCGCTTGAGACACTCGCTCAGCTTCTTGGTGGACGCATCCTGAGGCACCGGGTCCAGGGCCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:48955733|48956234 hsa-miR-328-5p 0 0 1
chr19:48955733|48956234 hsa-miR-328-3p 0 0 1
chr19:48955733|48956234 hsa-miR-558 0 0 1
chr19:48955733|48956234 hsa-miR-802 0 0 1
chr19:48955733|48956234 hsa-miR-1291 0 0 1
chr19:48955733|48956234 hsa-miR-513c-5p 0 0 1
chr19:48955733|48956234 hsa-miR-513c-3p 0 0 1
chr19:48955733|48956234 hsa-miR-542-5p 0 0 1
chr19:48955733|48956234 hsa-miR-492 1 0 0
chr19:48955733|48956234 hsa-miR-760 1 0 0
chr19:48955733|48956234 hsa-miR-378b 1 0 0
chr19:48955733|48956234 hsa-miR-3138 1 0 0
chr19:48955733|48956234 hsa-miR-378c 1 0 0
chr19:48955733|48956234 hsa-miR-4298 1 0 0
chr19:48955733|48956234 hsa-miR-4292 1 0 0
chr19:48955733|48956234 hsa-miR-3621 1 0 0
chr19:48955733|48956234 hsa-miR-378f 1 0 0
chr19:48955733|48956234 hsa-miR-378h 0 1 0
chr19:48955733|48956234 hsa-miR-4488 1 0 0
chr19:48955733|48956234 hsa-miR-4497 1 0 0
chr19:48955733|48956234 hsa-miR-4539 1 0 0
chr19:48955733|48956234 hsa-miR-4706 0 1 0
chr19:48955733|48956234 hsa-miR-6090 1 0 0
chr19:48955733|48956234 hsa-miR-6860 1 0 0
chr19:48955733|48956234 hsa-miR-8089 1 0 0
chr19:48955733|48956234 hsa-miR-12115 1 0 0
chr19:48955733|48956234 hsa-miR-6894-5p 1 0 0
chr19:48955733|48956234 hsa-miR-5187-5p 1 0 0
chr19:48955733|48956234 hsa-miR-6727-5p 1 0 0
chr19:48955733|48956234 hsa-miR-4655-5p 1 0 0
chr19:48955733|48956234 hsa-miR-874-3p 1 0 0
chr19:48955733|48956234 hsa-miR-6805-5p 1 0 0
chr19:48955733|48956234 hsa-miR-6810-5p 1 0 0
chr19:48955733|48956234 hsa-miR-4783-3p 1 0 0
chr19:48955733|48956234 hsa-miR-1908-5p 1 0 0
chr19:48955733|48956234 hsa-miR-92b-5p 1 0 0
chr19:48955733|48956234 hsa-miR-3690 0 1 0
chr19:48955733|48956234 hsa-miR-149-3p 1 0 0
chr19:48955733|48956234 hsa-miR-3158-5p 0 1 0
chr19:48955733|48956234 hsa-miR-6877-5p 1 0 0
chr19:48955733|48956234 hsa-miR-3191-3p 1 0 0
chr19:48955733|48956234 hsa-miR-4804-5p 0 1 0
chr19:48955733|48956234 hsa-miR-4520-3p 0 1 0
chr19:48955733|48956234 hsa-miR-4763-3p 1 0 0
chr19:48955733|48956234 hsa-miR-6722-3p 1 0 0
chr19:48955733|48956234 hsa-miR-4749-5p 1 0 0
chr19:48955733|48956234 hsa-miR-6777-5p 1 0 0
chr19:48955733|48956234 hsa-miR-6848-5p 1 0 0
chr19:48955733|48956234 hsa-miR-3187-5p 1 0 0
chr19:48955733|48956234 hsa-miR-4665-5p 1 0 0
chr19:48955733|48956234 hsa-miR-4646-5p 1 0 0
chr19:48955733|48956234 hsa-miR-378a-3p 1 0 0
chr19:48955733|48956234 hsa-miR-6849-5p 1 0 0
chr19:48955733|48956234 hsa-miR-6791-5p 1 0 0
chr19:48955733|48956234 hsa-miR-6775-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


circRNA Open Reading Frame (ORF)
CircID chr19:48955733|48956234
ORF Type ORF1
Protein Length 33
Nucleotide Length 99
Protein Sequence MQLHVTVQFVPDALETLAQLLGGRILRHRVQGQ
Nucleotide Sequence CTGCAGCTCCATGTTACTGTCCAGTTCGTCCCCGATGCGCTTGAGACACTCGCTCAGCTTCTTGGTGGACGCATCCTGAGGCACCGGGTCCAGGGCCAG

CircID chr19:48955733|48956234
ORF Type ORF2
Protein Length 46
Nucleotide Length 138
Protein Sequence LALDPVPQDASTKKLSECLKRIGDELDSNMELQRMIAAVDTDSPRE
Nucleotide Sequence CTGGCCCTGGACCCGGTGCCTCAGGATGCGTCCACCAAGAAGCTGAGCGAGTGTCTCAAGCGCATCGGGGACGAACTGGACAGTAACATGGAGCTGCAGAGGATGATTGCCGCCGTGGACACAGACTCCCCCCGAGAG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites