CircRNA Information

General Information
circRNA Basic Information
CircID chr19:48961127|48961328
Strand -
CircType exon
Host Gene ENSG00000087088.18;
Algorism CIRI2;
Sequence CTCCCAGTGACCCCTGACCTCACTGTGACCTTGACTTGATTAGTGCCTTCTGCCCTCCCTGGAGCCTCCACTGCCTCTGGAATTGCTCAAGTTCATTGATGACCCTCTGACCCTAGCTCTTTCCTTTTTTTTTTTTTCCCCACTGAGAAGGGGTCTCGCTATGTTGCCCAGGTTGGTCTCGAACTCCTGGCCTCAAGCGATC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:48961127|48961328 hsa-miR-27a-5p 0 0 1
chr19:48961127|48961328 hsa-miR-27a-3p 0 0 1
chr19:48961127|48961328 hsa-miR-34a-5p 0 0 1
chr19:48961127|48961328 hsa-miR-34a-3p 0 0 1
chr19:48961127|48961328 hsa-miR-27b-5p 0 0 1
chr19:48961127|48961328 hsa-miR-27b-3p 0 0 1
chr19:48961127|48961328 hsa-miR-449a 0 0 1
chr19:48961127|48961328 hsa-miR-506-5p 0 0 1
chr19:48961127|48961328 hsa-miR-506-3p 0 0 1
chr19:48961127|48961328 hsa-miR-612 0 1 1
chr19:48961127|48961328 hsa-miR-650 1 0 1
chr19:48961127|48961328 hsa-miR-449b-5p 0 0 1
chr19:48961127|48961328 hsa-miR-449b-3p 0 0 1
chr19:48961127|48961328 hsa-miR-298 0 0 1
chr19:48961127|48961328 hsa-miR-665 1 1 1
chr19:48961127|48961328 hsa-miR-1182 0 0 1
chr19:48961127|48961328 hsa-miR-1294 0 1 1
chr19:48961127|48961328 hsa-miR-1304-5p 0 0 1
chr19:48961127|48961328 hsa-miR-1304-3p 0 0 1
chr19:48961127|48961328 hsa-miR-1276 0 0 1
chr19:48961127|48961328 hsa-miR-1321 0 0 1
chr19:48961127|48961328 hsa-miR-1827 0 0 1
chr19:48961127|48961328 hsa-miR-491-5p 1 0 1
chr19:48961127|48961328 hsa-miR-490-3p 0 0 1
chr19:48961127|48961328 hsa-miR-525-5p 0 1 1
chr19:48961127|48961328 hsa-miR-520a-5p 0 0 1
chr19:48961127|48961328 hsa-miR-34c-5p 0 0 1
chr19:48961127|48961328 hsa-miR-128 0 0 1
chr19:48961127|48961328 hsa-miR-124 0 0 1
chr19:48961127|48961328 hsa-miR-1285 0 0 1
chr19:48961127|48961328 hsa-miR-637 1 0 0
chr19:48961127|48961328 hsa-miR-3132 1 0 0
chr19:48961127|48961328 hsa-miR-3141 1 0 0
chr19:48961127|48961328 hsa-miR-3185 1 0 0
chr19:48961127|48961328 hsa-miR-3196 1 0 0
chr19:48961127|48961328 hsa-miR-4259 1 0 0
chr19:48961127|48961328 hsa-miR-4270 1 1 0
chr19:48961127|48961328 hsa-miR-4271 1 0 0
chr19:48961127|48961328 hsa-miR-3652 1 0 0
chr19:48961127|48961328 hsa-miR-4467 1 0 0
chr19:48961127|48961328 hsa-miR-4476 1 1 0
chr19:48961127|48961328 hsa-miR-3974 0 1 0
chr19:48961127|48961328 hsa-miR-4651 1 0 0
chr19:48961127|48961328 hsa-miR-4688 1 0 0
chr19:48961127|48961328 hsa-miR-4692 1 1 0
chr19:48961127|48961328 hsa-miR-4706 1 0 0
chr19:48961127|48961328 hsa-miR-4710 1 0 0
chr19:48961127|48961328 hsa-miR-4721 1 0 0
chr19:48961127|48961328 hsa-miR-4739 1 1 0
chr19:48961127|48961328 hsa-miR-5090 1 0 0
chr19:48961127|48961328 hsa-miR-6081 1 0 0
chr19:48961127|48961328 hsa-miR-6127 1 0 0
chr19:48961127|48961328 hsa-miR-6165 1 0 0
chr19:48961127|48961328 hsa-miR-8089 1 0 0
chr19:48961127|48961328 hsa-miR-12115 1 1 0
chr19:48961127|48961328 hsa-miR-128-3p 0 1 0
chr19:48961127|48961328 hsa-miR-504-3p 1 0 0
chr19:48961127|48961328 hsa-miR-6765-5p 1 0 0
chr19:48961127|48961328 hsa-miR-6825-5p 1 0 0
chr19:48961127|48961328 hsa-miR-6857-5p 1 0 0
chr19:48961127|48961328 hsa-miR-6799-5p 1 0 0
chr19:48961127|48961328 hsa-miR-7851-3p 0 1 0
chr19:48961127|48961328 hsa-miR-4786-5p 0 1 0
chr19:48961127|48961328 hsa-miR-6089 1 0 0
chr19:48961127|48961328 hsa-miR-6880-5p 1 0 0
chr19:48961127|48961328 hsa-miR-7847-3p 1 1 0
chr19:48961127|48961328 hsa-miR-4695-5p 1 0 0
chr19:48961127|48961328 hsa-miR-4722-5p 1 0 0
chr19:48961127|48961328 hsa-miR-6721-5p 1 0 0
chr19:48961127|48961328 hsa-miR-1178-5p 0 1 0
chr19:48961127|48961328 hsa-miR-4655-5p 1 0 0
chr19:48961127|48961328 hsa-miR-197-5p 1 0 0
chr19:48961127|48961328 hsa-miR-6742-5p 1 0 0
chr19:48961127|48961328 hsa-miR-3151-5p 1 0 0
chr19:48961127|48961328 hsa-miR-3180-3p 1 0 0
chr19:48961127|48961328 hsa-miR-6796-5p 1 0 0
chr19:48961127|48961328 hsa-miR-6732-5p 1 0 0
chr19:48961127|48961328 hsa-miR-6798-5p 1 0 0
chr19:48961127|48961328 hsa-miR-6770-5p 1 0 0
chr19:48961127|48961328 hsa-miR-6760-5p 1 0 0
chr19:48961127|48961328 hsa-miR-2467-3p 1 1 0
chr19:48961127|48961328 hsa-miR-6786-5p 1 0 0
chr19:48961127|48961328 hsa-miR-1226-5p 1 0 0
chr19:48961127|48961328 hsa-miR-885-3p 1 0 0
chr19:48961127|48961328 hsa-miR-6771-5p 1 0 0
chr19:48961127|48961328 hsa-miR-6847-5p 1 0 0
chr19:48961127|48961328 hsa-miR-149-3p 1 1 0
chr19:48961127|48961328 hsa-miR-4668-5p 0 1 0
chr19:48961127|48961328 hsa-miR-6824-5p 1 0 0
chr19:48961127|48961328 hsa-miR-3162-5p 1 0 0
chr19:48961127|48961328 hsa-miR-6781-5p 1 0 0
chr19:48961127|48961328 hsa-miR-7112-5p 1 0 0
chr19:48961127|48961328 hsa-let-7c-5p 1 0 0
chr19:48961127|48961328 hsa-miR-6801-5p 0 1 0
chr19:48961127|48961328 hsa-miR-216a-3p 1 1 0
chr19:48961127|48961328 hsa-miR-605-3p 0 1 0
chr19:48961127|48961328 hsa-miR-7113-5p 1 1 0
chr19:48961127|48961328 hsa-miR-5088-3p 0 1 0
chr19:48961127|48961328 hsa-miR-6755-5p 1 0 0
chr19:48961127|48961328 hsa-miR-6846-3p 0 1 0
chr19:48961127|48961328 hsa-miR-1298-3p 0 1 0
chr19:48961127|48961328 hsa-miR-10400-5p 1 0 0
chr19:48961127|48961328 hsa-miR-1233-5p 1 0 0
chr19:48961127|48961328 hsa-miR-4763-3p 1 0 0
chr19:48961127|48961328 hsa-miR-6812-5p 1 0 0
chr19:48961127|48961328 hsa-miR-6870-5p 1 0 0
chr19:48961127|48961328 hsa-miR-6743-5p 1 0 0
chr19:48961127|48961328 hsa-miR-6754-5p 1 0 0
chr19:48961127|48961328 hsa-miR-6756-5p 1 0 0
chr19:48961127|48961328 hsa-miR-6813-5p 1 0 0
chr19:48961127|48961328 hsa-miR-10401-5p 1 0 0
chr19:48961127|48961328 hsa-miR-1249-5p 1 0 0
chr19:48961127|48961328 hsa-miR-6722-3p 1 0 0
chr19:48961127|48961328 hsa-miR-6763-5p 1 0 0
chr19:48961127|48961328 hsa-miR-6780a-5p 1 0 0
chr19:48961127|48961328 hsa-miR-6797-5p 1 0 0
chr19:48961127|48961328 hsa-miR-6879-5p 1 0 0
chr19:48961127|48961328 hsa-miR-7111-5p 1 0 0
chr19:48961127|48961328 hsa-miR-3127-3p 0 1 0
chr19:48961127|48961328 hsa-miR-4728-5p 1 1 0
chr19:48961127|48961328 hsa-miR-5189-5p 0 1 0
chr19:48961127|48961328 hsa-miR-6780b-5p 1 0 0
chr19:48961127|48961328 hsa-miR-328-5p 1 1 0
chr19:48961127|48961328 hsa-miR-449c-5p 0 1 0
chr19:48961127|48961328 hsa-miR-4632-5p 1 0 0
chr19:48961127|48961328 hsa-miR-4649-5p 1 0 0
chr19:48961127|48961328 hsa-miR-4685-5p 1 0 0
chr19:48961127|48961328 hsa-miR-4725-3p 1 0 0
chr19:48961127|48961328 hsa-miR-4726-5p 1 0 0
chr19:48961127|48961328 hsa-miR-4745-5p 1 0 0
chr19:48961127|48961328 hsa-miR-6735-5p 1 1 0
chr19:48961127|48961328 hsa-miR-6777-5p 1 0 0
chr19:48961127|48961328 hsa-miR-6795-5p 1 0 0
chr19:48961127|48961328 hsa-miR-6846-5p 1 0 0
chr19:48961127|48961328 hsa-miR-6848-5p 1 0 0
chr19:48961127|48961328 hsa-miR-6883-5p 1 1 0
chr19:48961127|48961328 hsa-miR-6887-5p 1 0 0
chr19:48961127|48961328 hsa-miR-3187-5p 0 1 0
chr19:48961127|48961328 hsa-miR-4436b-3p 0 1 0
chr19:48961127|48961328 hsa-miR-4697-5p 1 0 0
chr19:48961127|48961328 hsa-miR-6885-5p 1 0 0
chr19:48961127|48961328 hsa-miR-6511a-5p 1 0 0
chr19:48961127|48961328 hsa-miR-6731-5p 1 0 0
chr19:48961127|48961328 hsa-miR-1285-3p 1 1 0
chr19:48961127|48961328 hsa-miR-1914-3p 1 0 0
chr19:48961127|48961328 hsa-miR-4747-5p 1 0 0
chr19:48961127|48961328 hsa-miR-4716-3p 1 0 0
chr19:48961127|48961328 hsa-miR-6750-5p 1 0 0
chr19:48961127|48961328 hsa-miR-6785-5p 1 1 0
chr19:48961127|48961328 hsa-miR-4667-5p 0 1 0
chr19:48961127|48961328 hsa-miR-6849-5p 1 0 0
chr19:48961127|48961328 hsa-miR-6762-5p 1 0 0
chr19:48961127|48961328 hsa-miR-10400-3p 1 0 0
chr19:48961127|48961328 hsa-miR-320a-3p 1 0 0
chr19:48961127|48961328 hsa-miR-320b 1 0 0
chr19:48961127|48961328 hsa-miR-320c 1 0 0
chr19:48961127|48961328 hsa-miR-2682-5p 0 1 0
chr19:48961127|48961328 hsa-miR-3059-3p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:48961127|48961328
ORF Type ORF1
Protein Length 51
Nucleotide Length 153
Protein Sequence MPSLEPPLPLELLKFIDDPLTLALSFFFFSPLRRGLAMLPRLVSNSWPQAI
Nucleotide Sequence CTGCCCTCCCTGGAGCCTCCACTGCCTCTGGAATTGCTCAAGTTCATTGATGACCCTCTGACCCTAGCTCTTTCCTTTTTTTTTTTTTCCCCACTGAGAAGGGGTCTCGCTATGTTGCCCAGGTTGGTCTCGAACTCCTGGCCTCAAGCGATC
CircID chr19:48961127|48961328
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MRPGVRDQPGQHSETPSQWGKKKKGKS
Nucleotide Sequence TTGAGGCCAGGAGTTCGAGACCAACCTGGGCAACATAGCGAGACCCCTTCTCAGTGGGGAAAAAAAAAAAAAGGAAAGAGCTAG
CircID chr19:48961127|48961328
ORF Type ORF3
Protein Length 43
Nucleotide Length 132
Protein Sequence MGNIARPLLSGEKKKKERARVRGSSMNLSNSRGSGGSREGRRH
Nucleotide Sequence CTGGGCAACATAGCGAGACCCCTTCTCAGTGGGGAAAAAAAAAAAAAGGAAAGAGCTAGGGTCAGAGGGTCATCAATGAACTTGAGCAATTCCAGAGGCAGTGGAGGCTCCAGGGAGGGCAGAAGGCACTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab