CircRNA Information

General Information
circRNA Basic Information
CircID chr19:49102758|49102902
Strand +
CircType exon
Host Gene ENSG00000104852.13;
Algorism CIRI2;
Sequence AGGCCCATCCCGGGAGGAACAGCAAAGAAAACATGTGATTGTGTTCGTCTAGGCCTCTCTCTCTCTTTCCCTCTCTCAAGTCTCTAGACAGTGGAAGGTTCTTTAGTAAAAACCTACGACACCTTCAGCTGCTAGCAGCCTACCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:49102758|49102902 hsa-miR-15a-5p 0 0 1
chr19:49102758|49102902 hsa-miR-15a-3p 0 0 1
chr19:49102758|49102902 hsa-miR-15b-5p 0 0 1
chr19:49102758|49102902 hsa-miR-15b-3p 0 0 1
chr19:49102758|49102902 hsa-miR-186-5p 0 0 1
chr19:49102758|49102902 hsa-miR-186-3p 0 0 1
chr19:49102758|49102902 hsa-miR-195-5p 0 0 1
chr19:49102758|49102902 hsa-miR-195-3p 0 0 1
chr19:49102758|49102902 hsa-miR-424-5p 0 0 1
chr19:49102758|49102902 hsa-miR-424-3p 0 0 1
chr19:49102758|49102902 hsa-miR-493-5p 0 0 1
chr19:49102758|49102902 hsa-miR-493-3p 0 0 1
chr19:49102758|49102902 hsa-miR-497-5p 0 0 1
chr19:49102758|49102902 hsa-miR-497-3p 0 0 1
chr19:49102758|49102902 hsa-miR-503-5p 0 0 1
chr19:49102758|49102902 hsa-miR-503-3p 0 0 1
chr19:49102758|49102902 hsa-miR-621 0 0 1
chr19:49102758|49102902 hsa-miR-646 0 0 1
chr19:49102758|49102902 hsa-miR-518d-5p 0 0 1
chr19:49102758|49102902 hsa-miR-519b-5p 0 0 1
chr19:49102758|49102902 hsa-miR-519c-5p 0 0 1
chr19:49102758|49102902 hsa-miR-520c-5p 0 0 1
chr19:49102758|49102902 hsa-miR-548b-3p 0 0 1
chr19:49102758|49102902 hsa-miR-16 0 0 1
chr19:49102758|49102902 hsa-miR-526a 0 0 1
chr19:49102758|49102902 hsa-miR-1182 1 0 0
chr19:49102758|49102902 hsa-miR-3153 0 1 0
chr19:49102758|49102902 hsa-miR-3175 1 0 0
chr19:49102758|49102902 hsa-miR-3188 1 0 0
chr19:49102758|49102902 hsa-miR-4298 1 0 0
chr19:49102758|49102902 hsa-miR-4311 0 1 0
chr19:49102758|49102902 hsa-miR-4644 1 0 0
chr19:49102758|49102902 hsa-miR-4705 0 1 0
chr19:49102758|49102902 hsa-miR-4739 1 0 0
chr19:49102758|49102902 hsa-miR-6090 1 0 0
chr19:49102758|49102902 hsa-miR-6127 1 0 0
chr19:49102758|49102902 hsa-miR-6133 1 0 0
chr19:49102758|49102902 hsa-miR-8085 1 0 0
chr19:49102758|49102902 hsa-miR-6749-3p 0 1 0
chr19:49102758|49102902 hsa-miR-4747-3p 1 0 0
chr19:49102758|49102902 hsa-miR-6734-5p 1 0 0
chr19:49102758|49102902 hsa-miR-6757-5p 1 0 0
chr19:49102758|49102902 hsa-miR-6873-5p 1 0 0
chr19:49102758|49102902 hsa-miR-6798-5p 1 0 0
chr19:49102758|49102902 hsa-miR-149-3p 1 0 0
chr19:49102758|49102902 hsa-miR-423-5p 1 0 0
chr19:49102758|49102902 hsa-miR-1207-5p 1 0 0
chr19:49102758|49102902 hsa-miR-1233-5p 1 0 0
chr19:49102758|49102902 hsa-miR-6743-5p 1 0 0
chr19:49102758|49102902 hsa-miR-6754-5p 1 0 0
chr19:49102758|49102902 hsa-miR-1249-5p 1 0 0
chr19:49102758|49102902 hsa-miR-6780a-5p 1 0 0
chr19:49102758|49102902 hsa-miR-6797-5p 1 0 0
chr19:49102758|49102902 hsa-miR-4728-5p 1 0 0
chr19:49102758|49102902 hsa-miR-5196-5p 1 0 0
chr19:49102758|49102902 hsa-miR-4649-5p 1 0 0
chr19:49102758|49102902 hsa-miR-6729-5p 1 0 0
chr19:49102758|49102902 hsa-miR-6738-5p 1 0 0
chr19:49102758|49102902 hsa-miR-6794-5p 1 0 0
chr19:49102758|49102902 hsa-miR-6883-5p 1 0 0
chr19:49102758|49102902 hsa-miR-30c-1-3p 1 0 0
chr19:49102758|49102902 hsa-miR-6739-5p 0 1 0
chr19:49102758|49102902 hsa-miR-6758-5p 1 0 0
chr19:49102758|49102902 hsa-miR-6891-5p 1 0 0
chr19:49102758|49102902 hsa-miR-4716-3p 0 1 0
chr19:49102758|49102902 hsa-miR-3184-5p 1 0 0
chr19:49102758|49102902 hsa-miR-4524a-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:49102758|49102902
ORF Type ORF1
Protein Length 35
Nucleotide Length 105
Protein Sequence MCSSRPLSLFPSLKSLDSGRFFSKNLRHLQLLAAY
Nucleotide Sequence TTGTGTTCGTCTAGGCCTCTCTCTCTCTTTCCCTCTCTCAAGTCTCTAGACAGTGGAAGGTTCTTTAGTAAAAACCTACGACACCTTCAGCTGCTAGCAGCCTAC
CircID chr19:49102758|49102902
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MSRDLREGKRERGLDEHNHMFSLLFLPGWA
Nucleotide Sequence CTGTCTAGAGACTTGAGAGAGGGAAAGAGAGAGAGAGGCCTAGACGAACACAATCACATGTTTTCTTTGCTGTTCCTCCCGGGATGGGCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab