CircRNA Information

General Information
circRNA Basic Information
CircID chr19:49345507|49345688
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CACACCCAGCTAATTTTTTTCATTTTTTGTAGAGTTGAGGTCTCACTGTGTTGCCCAGGCTGGTGTCAAACTCTTGAACACAAGCGAAACTCTCGCCTCAGCTTCCCAAAGTGCTGGGAAGATAGGAGTGAACCACCACACCTAGCCAGGCTTTCTTCTCAGAGACTAGATCCCTCCACCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:49345507|49345688 hsa-miR-335-5p 0 0 1
chr19:49345507|49345688 hsa-miR-335-3p 0 0 1
chr19:49345507|49345688 hsa-miR-554 0 0 1
chr19:49345507|49345688 hsa-miR-581 0 0 1
chr19:49345507|49345688 hsa-miR-593-5p 0 0 1
chr19:49345507|49345688 hsa-miR-593-3p 0 0 1
chr19:49345507|49345688 hsa-miR-609 0 0 1
chr19:49345507|49345688 hsa-miR-612 0 0 1
chr19:49345507|49345688 hsa-miR-618 0 0 1
chr19:49345507|49345688 hsa-miR-661 0 0 1
chr19:49345507|49345688 hsa-miR-1226-5p 0 0 1
chr19:49345507|49345688 hsa-miR-1226-3p 0 0 1
chr19:49345507|49345688 hsa-miR-1253 0 0 1
chr19:49345507|49345688 hsa-miR-769-5p 0 0 1
chr19:49345507|49345688 hsa-miR-1283 0 0 1
chr19:49345507|49345688 hsa-miR-876-3p 0 0 1
chr19:49345507|49345688 hsa-miR-483-3p 0 0 1
chr19:49345507|49345688 hsa-miR-128 0 0 1
chr19:49345507|49345688 hsa-miR-323-5p 0 0 1
chr19:49345507|49345688 hsa-miR-1300 0 0 1
chr19:49345507|49345688 hsa-miR-1285 0 0 1
chr19:49345507|49345688 hsa-miR-514 0 0 1
chr19:49345507|49345688 hsa-miR-638 1 0 0
chr19:49345507|49345688 hsa-miR-658 1 0 0
chr19:49345507|49345688 hsa-miR-3612 1 0 0
chr19:49345507|49345688 hsa-miR-3916 1 0 0
chr19:49345507|49345688 hsa-miR-4654 1 0 0
chr19:49345507|49345688 hsa-miR-4721 1 0 0
chr19:49345507|49345688 hsa-miR-4779 1 0 0
chr19:49345507|49345688 hsa-miR-5194 1 0 0
chr19:49345507|49345688 hsa-miR-5787 1 0 0
chr19:49345507|49345688 hsa-miR-6127 1 0 0
chr19:49345507|49345688 hsa-miR-6129 1 0 0
chr19:49345507|49345688 hsa-miR-6133 1 0 0
chr19:49345507|49345688 hsa-miR-12114 1 0 0
chr19:49345507|49345688 hsa-miR-12119 1 0 0
chr19:49345507|49345688 hsa-miR-6765-5p 1 0 0
chr19:49345507|49345688 hsa-miR-671-5p 1 0 0
chr19:49345507|49345688 hsa-miR-149-5p 1 0 0
chr19:49345507|49345688 hsa-miR-6861-5p 1 0 0
chr19:49345507|49345688 hsa-miR-8071 1 0 0
chr19:49345507|49345688 hsa-miR-6089 1 0 0
chr19:49345507|49345688 hsa-miR-6757-5p 1 0 0
chr19:49345507|49345688 hsa-miR-6880-5p 1 0 0
chr19:49345507|49345688 hsa-miR-7847-3p 1 0 0
chr19:49345507|49345688 hsa-miR-6786-5p 1 0 0
chr19:49345507|49345688 hsa-miR-7109-5p 1 0 0
chr19:49345507|49345688 hsa-miR-149-3p 1 0 0
chr19:49345507|49345688 hsa-miR-6769b-5p 1 0 0
chr19:49345507|49345688 hsa-miR-6778-5p 1 0 0
chr19:49345507|49345688 hsa-miR-6787-5p 1 0 0
chr19:49345507|49345688 hsa-miR-6812-5p 1 0 0
chr19:49345507|49345688 hsa-miR-6756-5p 1 0 0
chr19:49345507|49345688 hsa-miR-11181-3p 1 0 0
chr19:49345507|49345688 hsa-miR-1249-5p 1 0 0
chr19:49345507|49345688 hsa-miR-6722-3p 1 0 0
chr19:49345507|49345688 hsa-miR-6797-5p 1 0 0
chr19:49345507|49345688 hsa-miR-7111-5p 1 0 0
chr19:49345507|49345688 hsa-miR-6738-5p 1 0 0
chr19:49345507|49345688 hsa-miR-6795-5p 1 0 0
chr19:49345507|49345688 hsa-miR-6858-5p 1 0 0
chr19:49345507|49345688 hsa-miR-6887-5p 1 0 0
chr19:49345507|49345688 hsa-miR-4723-5p 1 0 0
chr19:49345507|49345688 hsa-miR-939-5p 1 0 0
chr19:49345507|49345688 hsa-miR-6856-5p 1 0 0
chr19:49345507|49345688 hsa-miR-1285-3p 1 0 0
chr19:49345507|49345688 hsa-miR-1914-3p 1 0 0
chr19:49345507|49345688 hsa-miR-3116 1 0 0
chr19:49345507|49345688 hsa-miR-4646-5p 1 0 0
chr19:49345507|49345688 hsa-miR-4472 1 0 0
chr19:49345507|49345688 hsa-miR-9851-3p 1 0 0
chr19:49345507|49345688 hsa-miR-135a-2-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:49345507|49345688
ORF Type ORF1
Protein Length 45
Nucleotide Length 135
Protein Sequence MCCPGWCQTLEHKRNSRLSFPKCWEDRSEPPHLARLSSQRLDPST
Nucleotide Sequence CTGTGTTGCCCAGGCTGGTGTCAAACTCTTGAACACAAGCGAAACTCTCGCCTCAGCTTCCCAAAGTGCTGGGAAGATAGGAGTGAACCACCACACCTAGCCAGGCTTTCTTCTCAGAGACTAGATCCCTCCACC
CircID chr19:49345507|49345688
ORF Type ORF2
Protein Length 36
Nucleotide Length 111
Protein Sequence MRSHCVAQAGVKLLNTSETLASASQSAGKIGVNHHT
Nucleotide Sequence TTGAGGTCTCACTGTGTTGCCCAGGCTGGTGTCAAACTCTTGAACACAAGCGAAACTCTCGCCTCAGCTTCCCAAAGTGCTGGGAAGATAGGAGTGAACCACCACACCTAG
CircID chr19:49345507|49345688
ORF Type ORF3
Protein Length 27
Nucleotide Length 84
Protein Sequence MARCGGSLLSSQHFGKLRREFRLCSRV
Nucleotide Sequence CTGGCTAGGTGTGGTGGTTCACTCCTATCTTCCCAGCACTTTGGGAAGCTGAGGCGAGAGTTTCGCTTGTGTTCAAGAGTTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab