CircRNA Information

General Information
circRNA Basic Information
CircID chr19:49491774|49491938
Strand -
CircType exon
Host Gene ENSG00000142541.15;
Algorism CIRI2;
Sequence AAATACACAGAGGTCCTCAAGACCCACGGACTCCTGGTCTGAGCCCAATAAAGACTGTTAATTCCTCATGCGTTGCCTGCCCTTCCTCCATTGTTGCCCTGGAATGTACGGGACCCAGGGGCAGCAGCAGTCCAGGTGCCACAGGCAGCCCTGGGACATAGGAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:49491774|49491938 hsa-miR-181c-5p 0 0 1
chr19:49491774|49491938 hsa-miR-181c-3p 0 0 1
chr19:49491774|49491938 hsa-miR-212-5p 0 0 1
chr19:49491774|49491938 hsa-miR-212-3p 0 0 1
chr19:49491774|49491938 hsa-miR-132-5p 0 0 1
chr19:49491774|49491938 hsa-miR-132-3p 0 0 1
chr19:49491774|49491938 hsa-miR-422a 0 0 1
chr19:49491774|49491938 hsa-miR-181d-5p 0 0 1
chr19:49491774|49491938 hsa-miR-181d-3p 0 0 1
chr19:49491774|49491938 hsa-miR-526b-5p 0 0 1
chr19:49491774|49491938 hsa-miR-526b-3p 0 0 1
chr19:49491774|49491938 hsa-miR-619-5p 0 0 1
chr19:49491774|49491938 hsa-miR-619-3p 0 0 1
chr19:49491774|49491938 hsa-miR-765 1 0 1
chr19:49491774|49491938 hsa-miR-665 0 1 1
chr19:49491774|49491938 hsa-miR-1288-5p 0 0 1
chr19:49491774|49491938 hsa-miR-1288-3p 0 0 1
chr19:49491774|49491938 hsa-miR-1224-5p 0 0 1
chr19:49491774|49491938 hsa-miR-193a-5p 0 0 1
chr19:49491774|49491938 hsa-miR-1289 0 0 1
chr19:49491774|49491938 hsa-miR-331-3p 0 1 1
chr19:49491774|49491938 hsa-miR-337-3p 0 0 1
chr19:49491774|49491938 hsa-miR-324-3p 0 0 1
chr19:49491774|49491938 hsa-miR-378 0 0 1
chr19:49491774|49491938 hsa-miR-1269 0 0 1
chr19:49491774|49491938 hsa-miR-181a 0 0 1
chr19:49491774|49491938 hsa-miR-181b 0 0 1
chr19:49491774|49491938 hsa-miR-24 0 0 1
chr19:49491774|49491938 hsa-miR-661 0 1 0
chr19:49491774|49491938 hsa-miR-762 1 0 0
chr19:49491774|49491938 hsa-miR-760 1 0 0
chr19:49491774|49491938 hsa-miR-1182 1 0 0
chr19:49491774|49491938 hsa-miR-1269a 0 1 0
chr19:49491774|49491938 hsa-miR-1538 1 0 0
chr19:49491774|49491938 hsa-miR-3141 1 0 0
chr19:49491774|49491938 hsa-miR-3147 1 0 0
chr19:49491774|49491938 hsa-miR-4281 1 0 0
chr19:49491774|49491938 hsa-miR-3915 1 1 0
chr19:49491774|49491938 hsa-miR-4448 1 0 0
chr19:49491774|49491938 hsa-miR-4449 1 1 0
chr19:49491774|49491938 hsa-miR-378h 0 1 0
chr19:49491774|49491938 hsa-miR-4498 1 0 0
chr19:49491774|49491938 hsa-miR-1269b 0 1 0
chr19:49491774|49491938 hsa-miR-4534 0 1 0
chr19:49491774|49491938 hsa-miR-1587 1 0 0
chr19:49491774|49491938 hsa-miR-4656 1 0 0
chr19:49491774|49491938 hsa-miR-4674 0 1 0
chr19:49491774|49491938 hsa-miR-4739 1 0 0
chr19:49491774|49491938 hsa-miR-5093 1 0 0
chr19:49491774|49491938 hsa-miR-12115 1 0 0
chr19:49491774|49491938 hsa-miR-12128 1 0 0
chr19:49491774|49491938 hsa-miR-6857-5p 1 0 0
chr19:49491774|49491938 hsa-miR-210-5p 0 1 0
chr19:49491774|49491938 hsa-miR-6880-5p 1 0 0
chr19:49491774|49491938 hsa-miR-7847-3p 1 0 0
chr19:49491774|49491938 hsa-miR-4653-3p 1 0 0
chr19:49491774|49491938 hsa-miR-6890-5p 1 0 0
chr19:49491774|49491938 hsa-miR-24-3p 0 1 0
chr19:49491774|49491938 hsa-miR-6762-3p 0 1 0
chr19:49491774|49491938 hsa-miR-6806-5p 1 0 0
chr19:49491774|49491938 hsa-miR-23a-5p 1 0 0
chr19:49491774|49491938 hsa-miR-6798-5p 1 0 0
chr19:49491774|49491938 hsa-miR-6765-3p 0 1 0
chr19:49491774|49491938 hsa-miR-6882-3p 0 1 0
chr19:49491774|49491938 hsa-miR-1343-3p 0 1 0
chr19:49491774|49491938 hsa-miR-939-3p 0 1 0
chr19:49491774|49491938 hsa-miR-1226-5p 1 0 0
chr19:49491774|49491938 hsa-miR-1229-5p 1 0 0
chr19:49491774|49491938 hsa-miR-193b-5p 1 0 0
chr19:49491774|49491938 hsa-miR-6834-5p 1 0 0
chr19:49491774|49491938 hsa-miR-4446-3p 1 1 0
chr19:49491774|49491938 hsa-miR-149-3p 1 0 0
chr19:49491774|49491938 hsa-miR-5010-5p 1 0 0
chr19:49491774|49491938 hsa-miR-7112-5p 1 0 0
chr19:49491774|49491938 hsa-miR-4742-5p 0 1 0
chr19:49491774|49491938 hsa-miR-891a-3p 0 1 0
chr19:49491774|49491938 hsa-miR-4529-3p 0 1 0
chr19:49491774|49491938 hsa-miR-1207-5p 1 0 0
chr19:49491774|49491938 hsa-miR-6775-5p 1 1 0
chr19:49491774|49491938 hsa-miR-6743-5p 1 1 0
chr19:49491774|49491938 hsa-miR-11181-3p 1 0 0
chr19:49491774|49491938 hsa-miR-1249-5p 1 0 0
chr19:49491774|49491938 hsa-miR-6722-3p 1 0 0
chr19:49491774|49491938 hsa-miR-6797-5p 1 0 0
chr19:49491774|49491938 hsa-miR-6879-5p 1 1 0
chr19:49491774|49491938 hsa-miR-1915-3p 1 1 0
chr19:49491774|49491938 hsa-miR-3620-5p 1 0 0
chr19:49491774|49491938 hsa-miR-4728-5p 1 0 0
chr19:49491774|49491938 hsa-miR-6780b-5p 1 0 0
chr19:49491774|49491938 hsa-miR-328-5p 1 0 0
chr19:49491774|49491938 hsa-miR-4632-5p 1 1 0
chr19:49491774|49491938 hsa-miR-4685-5p 1 1 0
chr19:49491774|49491938 hsa-miR-6735-5p 1 1 0
chr19:49491774|49491938 hsa-miR-6858-5p 1 0 0
chr19:49491774|49491938 hsa-miR-6883-5p 1 0 0
chr19:49491774|49491938 hsa-miR-6889-5p 1 0 0
chr19:49491774|49491938 hsa-miR-4436b-3p 0 1 0
chr19:49491774|49491938 hsa-miR-6511b-5p 1 0 0
chr19:49491774|49491938 hsa-miR-3173-3p 1 0 0
chr19:49491774|49491938 hsa-miR-6876-5p 1 1 0
chr19:49491774|49491938 hsa-miR-6791-5p 1 0 0
chr19:49491774|49491938 hsa-miR-10400-3p 0 1 0
chr19:49491774|49491938 hsa-miR-6837-5p 0 1 0
chr19:49491774|49491938 hsa-miR-5581-5p 1 0 0
chr19:49491774|49491938 hsa-miR-6834-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:49491774|49491938
ORF Type ORF1
Protein Length 37
Nucleotide Length 111
Protein Sequence MLIPHALPALPPLLPWNVRDPGAAAVQVPQAALGHRK
Nucleotide Sequence CTGTTAATTCCTCATGCGTTGCCTGCCCTTCCTCCATTGTTGCCCTGGAATGTACGGGACCCAGGGGCAGCAGCAGTCCAGGTGCCACAGGCAGCCCTGGGACATAGGAAG
CircID chr19:49491774|49491938
ORF Type ORF2
Protein Length 32
Nucleotide Length 96
Protein Sequence MRCLPFLHCCPGMYGTQGQQQSRCHRQPWDIG
Nucleotide Sequence ATGCGTTGCCTGCCCTTCCTCCATTGTTGCCCTGGAATGTACGGGACCCAGGGGCAGCAGCAGTCCAGGTGCCACAGGCAGCCCTGGGACATAGGA
CircID chr19:49491774|49491938
ORF Type ORF3
Protein Length 40
Nucleotide Length 123
Protein Sequence MSPIKTVNSSCVACPSSIVALECTGPRGSSSPGATGSPGT
Nucleotide Sequence CTGAGCCCAATAAAGACTGTTAATTCCTCATGCGTTGCCTGCCCTTCCTCCATTGTTGCCCTGGAATGTACGGGACCCAGGGGCAGCAGCAGTCCAGGTGCCACAGGCAGCCCTGGGACATAG
CircID chr19:49491774|49491938
ORF Type ORF4
Protein Length 33
Nucleotide Length 102
Protein Sequence MSQGCLWHLDCCCPWVPYIPGQQWRKGRQRMRN
Nucleotide Sequence ATGTCCCAGGGCTGCCTGTGGCACCTGGACTGCTGCTGCCCCTGGGTCCCGTACATTCCAGGGCAACAATGGAGGAAGGGCAGGCAACGCATGAGGAATTAA
CircID chr19:49491774|49491938
ORF Type ORF5
Protein Length 43
Nucleotide Length 132
Protein Sequence MPVAPGLLLPLGPVHSRATMEEGQATHEELTVFIGLRPGVRGS
Nucleotide Sequence CTGCCTGTGGCACCTGGACTGCTGCTGCCCCTGGGTCCCGTACATTCCAGGGCAACAATGGAGGAAGGGCAGGCAACGCATGAGGAATTAACAGTCTTTATTGGGCTCAGACCAGGAGTCCGTGGGTCTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab