CircRNA Information

General Information
circRNA Basic Information
CircID chr19:49526039|49526278
Strand -
CircType exon
Host Gene ENSG00000104870.11;
Algorism CIRI2;
Sequence ACCGGGGTCCTCCTGCCCACCCCAGGGGAGGCCCAGGATGCTGATTTGAAGGATGTAAATGTGATTCCAGCCACCGCCTGACCATCCGCCATTCCGACTGCTAAAAGCGAATGTAGTCAGGCCCCTTTCATGCTGTGAGACCTCCTGGAACACTGGCATCTCTGAGCCTCCAGAAGGGGTTCTGGGCCTAGTTGTCCTCCCTCTGGAGCCCCGTCCTGTGGTCTGCCTCAGTTTCCCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:49526039|49526278 hsa-miR-23a-5p 0 0 1
chr19:49526039|49526278 hsa-miR-23a-3p 0 0 1
chr19:49526039|49526278 hsa-miR-181c-5p 0 0 1
chr19:49526039|49526278 hsa-miR-181c-3p 0 0 1
chr19:49526039|49526278 hsa-miR-205-5p 0 0 1
chr19:49526039|49526278 hsa-miR-205-3p 0 0 1
chr19:49526039|49526278 hsa-miR-23b-5p 0 0 1
chr19:49526039|49526278 hsa-miR-23b-3p 0 0 1
chr19:49526039|49526278 hsa-miR-488-5p 0 0 1
chr19:49526039|49526278 hsa-miR-488-3p 0 0 1
chr19:49526039|49526278 hsa-miR-181d-5p 0 0 1
chr19:49526039|49526278 hsa-miR-181d-3p 0 0 1
chr19:49526039|49526278 hsa-miR-607 0 0 1
chr19:49526039|49526278 hsa-miR-608 1 0 1
chr19:49526039|49526278 hsa-miR-650 0 0 1
chr19:49526039|49526278 hsa-miR-541-5p 0 0 1
chr19:49526039|49526278 hsa-miR-541-3p 0 0 1
chr19:49526039|49526278 hsa-miR-665 0 0 1
chr19:49526039|49526278 hsa-miR-1237-5p 0 0 1
chr19:49526039|49526278 hsa-miR-1237-3p 0 0 1
chr19:49526039|49526278 hsa-miR-1299 0 0 1
chr19:49526039|49526278 hsa-miR-1321 0 0 1
chr19:49526039|49526278 hsa-miR-1827 0 0 1
chr19:49526039|49526278 hsa-miR-199a-5p 0 0 1
chr19:49526039|49526278 hsa-miR-654-5p 0 0 1
chr19:49526039|49526278 hsa-miR-525-5p 0 0 1
chr19:49526039|49526278 hsa-miR-331-3p 0 0 1
chr19:49526039|49526278 hsa-miR-140-3p 0 0 1
chr19:49526039|49526278 hsa-miR-199b-5p 0 0 1
chr19:49526039|49526278 hsa-miR-342-5p 0 0 1
chr19:49526039|49526278 hsa-miR-520a-5p 0 0 1
chr19:49526039|49526278 hsa-miR-342-3p 0 0 1
chr19:49526039|49526278 hsa-miR-181a 0 0 1
chr19:49526039|49526278 hsa-miR-181b 0 0 1
chr19:49526039|49526278 hsa-miR-516b 0 0 1
chr19:49526039|49526278 hsa-miR-24 0 0 1
chr19:49526039|49526278 hsa-miR-549 0 0 1
chr19:49526039|49526278 hsa-miR-198 1 0 0
chr19:49526039|49526278 hsa-miR-637 1 0 0
chr19:49526039|49526278 hsa-miR-638 1 0 0
chr19:49526039|49526278 hsa-miR-663a 1 0 0
chr19:49526039|49526278 hsa-miR-2861 1 0 0
chr19:49526039|49526278 hsa-miR-3175 1 0 0
chr19:49526039|49526278 hsa-miR-3907 1 0 0
chr19:49526039|49526278 hsa-miR-3937 1 0 0
chr19:49526039|49526278 hsa-miR-4467 1 0 0
chr19:49526039|49526278 hsa-miR-4489 1 0 0
chr19:49526039|49526278 hsa-miR-4496 1 0 0
chr19:49526039|49526278 hsa-miR-4651 1 0 0
chr19:49526039|49526278 hsa-miR-4688 1 0 0
chr19:49526039|49526278 hsa-miR-4739 1 0 0
chr19:49526039|49526278 hsa-miR-5787 1 0 0
chr19:49526039|49526278 hsa-miR-7974 1 0 0
chr19:49526039|49526278 hsa-miR-6765-5p 1 0 0
chr19:49526039|49526278 hsa-miR-8069 1 0 0
chr19:49526039|49526278 hsa-miR-6768-5p 1 0 0
chr19:49526039|49526278 hsa-miR-185-3p 1 0 0
chr19:49526039|49526278 hsa-miR-6732-5p 1 0 0
chr19:49526039|49526278 hsa-miR-6798-5p 1 0 0
chr19:49526039|49526278 hsa-miR-486-3p 1 0 0
chr19:49526039|49526278 hsa-miR-5006-5p 1 0 0
chr19:49526039|49526278 hsa-miR-939-3p 1 0 0
chr19:49526039|49526278 hsa-miR-5088-5p 1 0 0
chr19:49526039|49526278 hsa-miR-1226-5p 1 0 0
chr19:49526039|49526278 hsa-miR-6784-5p 1 0 0
chr19:49526039|49526278 hsa-miR-744-5p 1 0 0
chr19:49526039|49526278 hsa-miR-4750-5p 1 0 0
chr19:49526039|49526278 hsa-miR-10400-5p 1 0 0
chr19:49526039|49526278 hsa-miR-6778-5p 1 0 0
chr19:49526039|49526278 hsa-miR-6812-5p 1 0 0
chr19:49526039|49526278 hsa-miR-6816-5p 1 0 0
chr19:49526039|49526278 hsa-miR-6775-5p 1 0 0
chr19:49526039|49526278 hsa-miR-5001-5p 1 0 0
chr19:49526039|49526278 hsa-miR-6737-5p 1 0 0
chr19:49526039|49526278 hsa-miR-6743-5p 1 0 0
chr19:49526039|49526278 hsa-miR-6756-5p 1 0 0
chr19:49526039|49526278 hsa-miR-6803-5p 1 0 0
chr19:49526039|49526278 hsa-miR-6819-5p 1 0 0
chr19:49526039|49526278 hsa-miR-6851-5p 1 0 0
chr19:49526039|49526278 hsa-miR-1249-5p 1 0 0
chr19:49526039|49526278 hsa-miR-6797-5p 1 0 0
chr19:49526039|49526278 hsa-miR-7111-5p 1 0 0
chr19:49526039|49526278 hsa-miR-3620-5p 1 0 0
chr19:49526039|49526278 hsa-miR-6780b-5p 1 0 0
chr19:49526039|49526278 hsa-miR-10396a-5p 1 0 0
chr19:49526039|49526278 hsa-miR-10396b-5p 1 0 0
chr19:49526039|49526278 hsa-miR-4725-3p 1 0 0
chr19:49526039|49526278 hsa-miR-6848-5p 1 0 0
chr19:49526039|49526278 hsa-miR-3085-5p 1 0 0
chr19:49526039|49526278 hsa-miR-6791-5p 1 0 0
chr19:49526039|49526278 hsa-miR-769-3p 1 0 0
chr19:49526039|49526278 hsa-miR-10400-3p 1 0 0
chr19:49526039|49526278 hsa-miR-450b-3p 1 0 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:49526039|49526278
ORF Type ORF1
Protein Length 47
Nucleotide Length 141
Protein Sequence MLKANVVRPLSCCETSWNTGISEPPEGVLGLVVLPLEPRPVVCLSFP
Nucleotide Sequence CTGCTAAAAGCGAATGTAGTCAGGCCCCTTTCATGCTGTGAGACCTCCTGGAACACTGGCATCTCTGAGCCTCCAGAAGGGGTTCTGGGCCTAGTTGTCCTCCCTCTGGAGCCCCGTCCTGTGGTCTGCCTCAGTTTCCCC
CircID chr19:49526039|49526278
ORF Type ORF2
Protein Length 77
Nucleotide Length 231
Protein Sequence MRQTTGRGSRGRTTRPRTPSGGSEMPVFQEVSQHERGLTTFAFSSRNGGWSGGGWNHIYILQISILGLPWGGQEDPG
Nucleotide Sequence CTGAGGCAGACCACAGGACGGGGCTCCAGAGGGAGGACAACTAGGCCCAGAACCCCTTCTGGAGGCTCAGAGATGCCAGTGTTCCAGGAGGTCTCACAGCATGAAAGGGGCCTGACTACATTCGCTTTTAGCAGTCGGAATGGCGGATGGTCAGGCGGTGGCTGGAATCACATTTACATCCTTCAAATCAGCATCCTGGGCCTCCCCTGGGGTGGGCAGGAGGACCCCGGT
CircID chr19:49526039|49526278
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MADGQAVAGITFTSFKSASWASPGVGRRTP
Nucleotide Sequence ATGGCGGATGGTCAGGCGGTGGCTGGAATCACATTTACATCCTTCAAATCAGCATCCTGGGCCTCCCCTGGGGTGGGCAGGAGGACCCCG
CircID chr19:49526039|49526278
ORF Type ORF4
Protein Length 28
Nucleotide Length 84
Protein Sequence MVRRWLESHLHPSNQHPGPPLGWAGGPR
Nucleotide Sequence ATGGTCAGGCGGTGGCTGGAATCACATTTACATCCTTCAAATCAGCATCCTGGGCCTCCCCTGGGGTGGGCAGGAGGACCCCGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab