CircRNA Information

General Information
circRNA Basic Information
CircID chr19:49652757|49652968
Strand -
CircType exon
Host Gene ENSG00000126461.13;
Algorism CIRI2;
Sequence AGGTCATCCAAGAAGGCCCGGCCCCCCAAGGAGTCGGCGCCTTCCTCAGGGCCCCCGCCAAAGCCACCAGTCAGCAGCGGCTCAGGCTCTTCATCCTCGTCGTCCTCCTGTTCTTCCCGGAAGGTGAAGCTGCAGTCCAAGGTGGCGGTGCTGATCCGCGAGGGTGTCAGCAGCACCACCCCGGCCAAGGATGCCGCGTCAGCCGGCCTGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:49652757|49652968 hsa-miR-412-5p 0 0 1
chr19:49652757|49652968 hsa-miR-412-3p 0 0 1
chr19:49652757|49652968 hsa-miR-432-5p 0 0 1
chr19:49652757|49652968 hsa-miR-432-3p 0 0 1
chr19:49652757|49652968 hsa-miR-608 1 1 1
chr19:49652757|49652968 hsa-miR-1301-5p 0 0 1
chr19:49652757|49652968 hsa-miR-1301-3p 0 0 1
chr19:49652757|49652968 hsa-miR-1291 0 1 1
chr19:49652757|49652968 hsa-miR-1293 0 1 1
chr19:49652757|49652968 hsa-miR-1248 0 0 1
chr19:49652757|49652968 hsa-miR-1255a 0 0 1
chr19:49652757|49652968 hsa-miR-1275 0 0 1
chr19:49652757|49652968 hsa-miR-1288-5p 0 0 1
chr19:49652757|49652968 hsa-miR-1288-3p 0 0 1
chr19:49652757|49652968 hsa-miR-1184 0 0 1
chr19:49652757|49652968 hsa-miR-628-5p 0 1 1
chr19:49652757|49652968 hsa-miR-125a-5p 0 0 1
chr19:49652757|49652968 hsa-miR-362-5p 0 1 1
chr19:49652757|49652968 hsa-miR-509-3-5p 0 0 1
chr19:49652757|49652968 hsa-miR-509-5p 0 0 1
chr19:49652757|49652968 hsa-miR-524-3p 0 1 1
chr19:49652757|49652968 hsa-miR-525-3p 0 1 1
chr19:49652757|49652968 hsa-miR-125b 0 0 1
chr19:49652757|49652968 hsa-miR-1255b 0 0 1
chr19:49652757|49652968 hsa-miR-1269 0 0 1
chr19:49652757|49652968 hsa-miR-663 0 0 1
chr19:49652757|49652968 hsa-miR-637 1 0 0
chr19:49652757|49652968 hsa-miR-663a 0 1 0
chr19:49652757|49652968 hsa-miR-2861 1 0 0
chr19:49652757|49652968 hsa-miR-3131 1 0 0
chr19:49652757|49652968 hsa-miR-544b 0 1 0
chr19:49652757|49652968 hsa-miR-4456 0 1 0
chr19:49652757|49652968 hsa-miR-4483 0 1 0
chr19:49652757|49652968 hsa-miR-4689 1 0 0
chr19:49652757|49652968 hsa-miR-4706 1 0 0
chr19:49652757|49652968 hsa-miR-4734 1 0 0
chr19:49652757|49652968 hsa-miR-4739 1 0 0
chr19:49652757|49652968 hsa-miR-5787 1 0 0
chr19:49652757|49652968 hsa-miR-6078 1 0 0
chr19:49652757|49652968 hsa-miR-6165 1 0 0
chr19:49652757|49652968 hsa-miR-7706 1 0 0
chr19:49652757|49652968 hsa-miR-8077 1 0 0
chr19:49652757|49652968 hsa-miR-9718 0 1 0
chr19:49652757|49652968 hsa-miR-4665-3p 1 0 0
chr19:49652757|49652968 hsa-miR-6894-5p 1 1 0
chr19:49652757|49652968 hsa-miR-4687-3p 1 0 0
chr19:49652757|49652968 hsa-miR-6089 1 0 0
chr19:49652757|49652968 hsa-miR-6744-5p 1 0 0
chr19:49652757|49652968 hsa-miR-6746-5p 1 0 0
chr19:49652757|49652968 hsa-miR-4709-3p 0 1 0
chr19:49652757|49652968 hsa-miR-4722-5p 1 0 0
chr19:49652757|49652968 hsa-miR-4655-5p 1 0 0
chr19:49652757|49652968 hsa-miR-3605-5p 1 1 0
chr19:49652757|49652968 hsa-miR-6798-5p 1 1 0
chr19:49652757|49652968 hsa-miR-6786-5p 1 0 0
chr19:49652757|49652968 hsa-miR-939-3p 0 1 0
chr19:49652757|49652968 hsa-miR-204-3p 1 0 0
chr19:49652757|49652968 hsa-miR-4715-3p 0 1 0
chr19:49652757|49652968 hsa-miR-6771-5p 1 0 0
chr19:49652757|49652968 hsa-miR-4690-5p 1 0 0
chr19:49652757|49652968 hsa-miR-6507-5p 1 1 0
chr19:49652757|49652968 hsa-miR-6730-3p 0 1 0
chr19:49652757|49652968 hsa-miR-4773 0 1 0
chr19:49652757|49652968 hsa-miR-4529-3p 0 1 0
chr19:49652757|49652968 hsa-miR-3617-3p 0 1 0
chr19:49652757|49652968 hsa-miR-4763-3p 1 0 0
chr19:49652757|49652968 hsa-miR-6756-5p 1 0 0
chr19:49652757|49652968 hsa-miR-1249-5p 1 0 0
chr19:49652757|49652968 hsa-miR-7111-5p 1 0 0
chr19:49652757|49652968 hsa-miR-5196-5p 1 0 0
chr19:49652757|49652968 hsa-miR-10396b-5p 1 1 0
chr19:49652757|49652968 hsa-miR-1237-5p 1 0 0
chr19:49652757|49652968 hsa-miR-328-5p 1 0 0
chr19:49652757|49652968 hsa-miR-4649-5p 1 0 0
chr19:49652757|49652968 hsa-miR-4725-3p 1 0 0
chr19:49652757|49652968 hsa-miR-6729-5p 1 0 0
chr19:49652757|49652968 hsa-miR-6794-5p 1 0 0
chr19:49652757|49652968 hsa-miR-6848-5p 1 0 0
chr19:49652757|49652968 hsa-miR-6858-5p 1 0 0
chr19:49652757|49652968 hsa-miR-6885-5p 0 1 0
chr19:49652757|49652968 hsa-miR-1199-5p 1 0 0
chr19:49652757|49652968 hsa-miR-4665-5p 1 0 0
chr19:49652757|49652968 hsa-miR-4646-5p 1 0 0
chr19:49652757|49652968 hsa-miR-6751-3p 0 1 0
chr19:49652757|49652968 hsa-miR-4756-5p 0 1 0
chr19:49652757|49652968 hsa-miR-5581-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:49652757|49652968
ORF Type ORF1
Protein Length 27
Nucleotide Length 81
Protein Sequence MQSKVAVLIREGVSSTTPAKDAASAGL
Nucleotide Sequence CTGCAGTCCAAGGTGGCGGTGCTGATCCGCGAGGGTGTCAGCAGCACCACCCCGGCCAAGGATGCCGCGTCAGCCGGCCTG
CircID chr19:49652757|49652968
ORF Type ORF2
Protein Length 35
Nucleotide Length 105
Protein Sequence MFFPEGEAAVQGGGADPRGCQQHHPGQGCRVSRPG
Nucleotide Sequence CTGTTCTTCCCGGAAGGTGAAGCTGCAGTCCAAGGTGGCGGTGCTGATCCGCGAGGGTGTCAGCAGCACCACCCCGGCCAAGGATGCCGCGTCAGCCGGCCTGGG
CircID chr19:49652757|49652968
ORF Type ORF3
Protein Length 62
Nucleotide Length 186
Protein Sequence MAGVVLLTPSRISTATLDCSFTFREEQEDDEDEEPEPLLTGGFGGGPEEGADSLGGRAFLDD
Nucleotide Sequence TTGGCCGGGGTGGTGCTGCTGACACCCTCGCGGATCAGCACCGCCACCTTGGACTGCAGCTTCACCTTCCGGGAAGAACAGGAGGACGACGAGGATGAAGAGCCTGAGCCGCTGCTGACTGGTGGCTTTGGCGGGGGCCCTGAGGAAGGCGCCGACTCCTTGGGGGGCCGGGCCTTCTTGGATGAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab