CircRNA Information

General Information
circRNA Basic Information
CircID chr19:49658403|49658546
Strand +
CircType exon
Host Gene ENSG00000126461.13;
Algorism CIRI2;
Sequence GGGGCAGGGCAGGGCAGGGGGCTCTCCTCTTCCCTGCAGCAACCCTCCCCCAGTCATCCCACTGACGGGGGAGGGAGGTGGGGAGGTGGAGCCATAAATACGTCCAGAGTTTCAAAGAGGTGAGGGGCGAAGAGCTGGCCAGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:49658403|49658546 hsa-miR-135b-5p 0 0 1
chr19:49658403|49658546 hsa-miR-135b-3p 0 0 1
chr19:49658403|49658546 hsa-miR-422a 0 0 1
chr19:49658403|49658546 hsa-miR-625-5p 0 0 1
chr19:49658403|49658546 hsa-miR-625-3p 0 0 1
chr19:49658403|49658546 hsa-miR-637 0 0 1
chr19:49658403|49658546 hsa-miR-874-5p 0 0 1
chr19:49658403|49658546 hsa-miR-874-3p 0 0 1
chr19:49658403|49658546 hsa-miR-1205 0 0 1
chr19:49658403|49658546 hsa-miR-1275 0 1 1
chr19:49658403|49658546 hsa-miR-1225-3p 1 1 1
chr19:49658403|49658546 hsa-miR-296-3p 0 1 1
chr19:49658403|49658546 hsa-miR-146b-3p 0 0 1
chr19:49658403|49658546 hsa-miR-1224-3p 0 1 1
chr19:49658403|49658546 hsa-miR-324-3p 0 0 1
chr19:49658403|49658546 hsa-miR-378 0 0 1
chr19:49658403|49658546 hsa-miR-135a 0 0 1
chr19:49658403|49658546 hsa-miR-326 1 0 0
chr19:49658403|49658546 hsa-miR-1976 0 1 0
chr19:49658403|49658546 hsa-miR-4313 1 1 0
chr19:49658403|49658546 hsa-miR-4268 1 0 0
chr19:49658403|49658546 hsa-miR-3943 0 1 0
chr19:49658403|49658546 hsa-miR-4469 0 1 0
chr19:49658403|49658546 hsa-miR-4654 0 1 0
chr19:49658403|49658546 hsa-miR-4706 0 1 0
chr19:49658403|49658546 hsa-miR-4739 0 1 0
chr19:49658403|49658546 hsa-miR-9500 0 1 0
chr19:49658403|49658546 hsa-miR-6747-3p 0 1 0
chr19:49658403|49658546 hsa-miR-149-5p 0 1 0
chr19:49658403|49658546 hsa-miR-1233-3p 1 0 0
chr19:49658403|49658546 hsa-miR-6892-3p 1 0 0
chr19:49658403|49658546 hsa-miR-6510-5p 0 1 0
chr19:49658403|49658546 hsa-miR-6728-5p 0 1 0
chr19:49658403|49658546 hsa-miR-6744-5p 0 1 0
chr19:49658403|49658546 hsa-miR-4709-3p 0 1 0
chr19:49658403|49658546 hsa-miR-296-5p 1 0 0
chr19:49658403|49658546 hsa-miR-7110-3p 1 0 0
chr19:49658403|49658546 hsa-miR-1915-5p 0 1 0
chr19:49658403|49658546 hsa-miR-877-3p 1 1 0
chr19:49658403|49658546 hsa-miR-6728-3p 0 1 0
chr19:49658403|49658546 hsa-miR-6788-3p 0 1 0
chr19:49658403|49658546 hsa-miR-6884-3p 1 0 0
chr19:49658403|49658546 hsa-miR-4763-5p 0 1 0
chr19:49658403|49658546 hsa-miR-6803-3p 1 0 0
chr19:49658403|49658546 hsa-miR-4640-3p 1 0 0
chr19:49658403|49658546 hsa-miR-1306-5p 0 1 0
chr19:49658403|49658546 hsa-miR-6769a-3p 1 1 0
chr19:49658403|49658546 hsa-miR-194-3p 0 1 0
chr19:49658403|49658546 hsa-miR-7850-5p 0 1 0
chr19:49658403|49658546 hsa-miR-3190-5p 1 1 0
chr19:49658403|49658546 hsa-miR-7106-3p 1 1 0
chr19:49658403|49658546 hsa-miR-4687-5p 1 0 0
chr19:49658403|49658546 hsa-miR-4732-3p 0 1 0
chr19:49658403|49658546 hsa-miR-6741-3p 1 1 0
chr19:49658403|49658546 hsa-miR-6752-3p 0 1 0
chr19:49658403|49658546 hsa-miR-6886-3p 1 0 0
chr19:49658403|49658546 hsa-miR-6795-3p 1 0 0
chr19:49658403|49658546 hsa-miR-1229-3p 1 0 0
chr19:49658403|49658546 hsa-miR-3173-5p 0 1 0
chr19:49658403|49658546 hsa-miR-1249-3p 1 0 0
chr19:49658403|49658546 hsa-miR-6812-5p 0 1 0
chr19:49658403|49658546 hsa-miR-4728-5p 0 1 0
chr19:49658403|49658546 hsa-miR-6780b-5p 0 1 0
chr19:49658403|49658546 hsa-miR-6883-5p 0 1 0
chr19:49658403|49658546 hsa-miR-4769-5p 0 1 0
chr19:49658403|49658546 hsa-miR-6799-3p 0 1 0
chr19:49658403|49658546 hsa-miR-6791-3p 1 0 0
chr19:49658403|49658546 hsa-miR-10401-3p 1 0 0
chr19:49658403|49658546 hsa-miR-6801-3p 0 1 0
chr19:49658403|49658546 hsa-miR-6810-3p 0 1 0
chr19:49658403|49658546 hsa-miR-6829-3p 1 0 0
chr19:49658403|49658546 hsa-miR-3928-5p 1 0 0
chr19:49658403|49658546 hsa-miR-4723-3p 1 0 0
chr19:49658403|49658546 hsa-miR-6823-3p 1 0 0
chr19:49658403|49658546 hsa-miR-6891-3p 1 0 0
chr19:49658403|49658546 hsa-miR-412-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:49658403|49658546
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MQQPSPSHPTDGGGRWGGGAINTSRVSKR
Nucleotide Sequence CTGCAGCAACCCTCCCCCAGTCATCCCACTGACGGGGGAGGGAGGTGGGGAGGTGGAGCCATAAATACGTCCAGAGTTTCAAAGAGGTGA
CircID chr19:49658403|49658546
ORF Type ORF2
Protein Length 47
Nucleotide Length 141
Protein Sequence LASSSPLTSLKLWTYLWLHLPTSLPRQWDDWGRVAAGKRRAPCPALP
Nucleotide Sequence CTGGCCAGCTCTTCGCCCCTCACCTCTTTGAAACTCTGGACGTATTTATGGCTCCACCTCCCCACCTCCCTCCCCCGTCAGTGGGATGACTGGGGGAGGGTTGCTGCAGGGAAGAGGAGAGCCCCCTGCCCTGCCCTGCCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab