CircRNA Information

General Information
circRNA Basic Information
CircID chr19:49659601|49659720
Strand +
CircType exon
Host Gene ENSG00000126456.14;
Algorism CIRI2;
Sequence CTCCGACCAGTACAAGGCCTACCTGCAGGACTTGGTGGAGGGCATGGATTTCCAGGGCCCTGGGGAGAGCTGAGCCCTCGCTCCTCATGGTGTGCCTCCAACCCCCCTGTTCCCCACCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:49659601|49659720 hsa-miR-650 0 1 1
chr19:49659601|49659720 hsa-miR-657 0 0 1
chr19:49659601|49659720 hsa-miR-541-5p 0 0 1
chr19:49659601|49659720 hsa-miR-541-3p 0 0 1
chr19:49659601|49659720 hsa-miR-1205 0 1 1
chr19:49659601|49659720 hsa-miR-1291 0 1 1
chr19:49659601|49659720 hsa-miR-491-5p 1 1 1
chr19:49659601|49659720 hsa-miR-654-5p 0 0 1
chr19:49659601|49659720 hsa-miR-875-3p 0 0 1
chr19:49659601|49659720 hsa-miR-24 0 0 1
chr19:49659601|49659720 hsa-miR-768-5p 0 0 1
chr19:49659601|49659720 hsa-miR-637 1 0 0
chr19:49659601|49659720 hsa-miR-3154 1 0 0
chr19:49659601|49659720 hsa-miR-3197 1 0 0
chr19:49659601|49659720 hsa-miR-4298 1 0 0
chr19:49659601|49659720 hsa-miR-4312 0 1 0
chr19:49659601|49659720 hsa-miR-3612 0 1 0
chr19:49659601|49659720 hsa-miR-4540 0 1 0
chr19:49659601|49659720 hsa-miR-4683 0 1 0
chr19:49659601|49659720 hsa-miR-8089 0 1 0
chr19:49659601|49659720 hsa-miR-6510-5p 1 0 0
chr19:49659601|49659720 hsa-miR-6880-5p 1 0 0
chr19:49659601|49659720 hsa-miR-4695-5p 1 0 0
chr19:49659601|49659720 hsa-miR-4722-5p 1 0 0
chr19:49659601|49659720 hsa-miR-24-3p 0 1 0
chr19:49659601|49659720 hsa-miR-6727-5p 1 0 0
chr19:49659601|49659720 hsa-miR-7845-5p 1 0 0
chr19:49659601|49659720 hsa-miR-6787-3p 0 1 0
chr19:49659601|49659720 hsa-miR-6732-5p 1 0 0
chr19:49659601|49659720 hsa-miR-6805-5p 1 0 0
chr19:49659601|49659720 hsa-miR-6798-5p 1 1 0
chr19:49659601|49659720 hsa-miR-6786-5p 1 0 0
chr19:49659601|49659720 hsa-miR-5088-5p 0 1 0
chr19:49659601|49659720 hsa-miR-296-3p 1 0 0
chr19:49659601|49659720 hsa-miR-4787-5p 1 0 0
chr19:49659601|49659720 hsa-miR-4733-3p 0 1 0
chr19:49659601|49659720 hsa-miR-6789-5p 1 0 0
chr19:49659601|49659720 hsa-miR-7160-3p 0 1 0
chr19:49659601|49659720 hsa-miR-3158-3p 0 1 0
chr19:49659601|49659720 hsa-miR-6872-3p 0 1 0
chr19:49659601|49659720 hsa-miR-1296-5p 0 1 0
chr19:49659601|49659720 hsa-miR-5581-3p 0 1 0
chr19:49659601|49659720 hsa-miR-1233-5p 1 0 0
chr19:49659601|49659720 hsa-miR-6870-5p 1 0 0
chr19:49659601|49659720 hsa-miR-1343-5p 1 0 0
chr19:49659601|49659720 hsa-miR-6752-5p 1 0 0
chr19:49659601|49659720 hsa-miR-6756-5p 1 0 0
chr19:49659601|49659720 hsa-miR-7110-5p 1 0 0
chr19:49659601|49659720 hsa-miR-6722-3p 1 0 0
chr19:49659601|49659720 hsa-miR-5196-5p 1 0 0
chr19:49659601|49659720 hsa-miR-1909-3p 1 0 0
chr19:49659601|49659720 hsa-miR-328-5p 1 0 0
chr19:49659601|49659720 hsa-miR-4649-5p 1 1 0
chr19:49659601|49659720 hsa-miR-4685-5p 0 1 0
chr19:49659601|49659720 hsa-miR-6794-5p 1 0 0
chr19:49659601|49659720 hsa-miR-6795-5p 1 0 0
chr19:49659601|49659720 hsa-miR-6846-5p 1 0 0
chr19:49659601|49659720 hsa-miR-6848-5p 1 0 0
chr19:49659601|49659720 hsa-miR-6858-5p 0 1 0
chr19:49659601|49659720 hsa-miR-6887-5p 1 0 0
chr19:49659601|49659720 hsa-miR-939-5p 1 1 0
chr19:49659601|49659720 hsa-miR-3940-5p 1 0 0
chr19:49659601|49659720 hsa-miR-4665-5p 1 0 0
chr19:49659601|49659720 hsa-miR-6837-5p 0 1 0
chr19:49659601|49659720 hsa-miR-10394-5p 0 1 0
chr19:49659601|49659720 hsa-miR-6764-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:49659601|49659720
ORF Type ORF1
Protein Length 33
Nucleotide Length 99
Protein Sequence MEAHHEERGLSSPQGPGNPCPPPSPAGRPCTGR
Nucleotide Sequence TTGGAGGCACACCATGAGGAGCGAGGGCTCAGCTCTCCCCAGGGCCCTGGAAATCCATGCCCTCCACCAAGTCCTGCAGGTAGGCCTTGTACTGGTCGG
CircID chr19:49659601|49659720
ORF Type ORF2
Protein Length 29
Nucleotide Length 87
Protein Sequence MRSEGSALPRALEIHALHQVLQVGLVLVG
Nucleotide Sequence ATGAGGAGCGAGGGCTCAGCTCTCCCCAGGGCCCTGGAAATCCATGCCCTCCACCAAGTCCTGCAGGTAGGCCTTGTACTGGTCGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab