CircRNA Information

General Information
circRNA Basic Information
CircID chr19:49681988|49683958
Strand +
CircType exon
Host Gene ENSG00000126457.19;
Algorism CIRI2;
Sequence CTCCTCCACCTTCCCCTTGATGATGGTCACCACGTGGTCTAACTTGTTGGCTTTGACGATCTTCACCGCATAATCAGAGATACTGGAACACTCGATCTGAGGGCCCAGGAAGAAGGGAGGGTGAGACCCATCCCCTGCCCCCATCACCTCCATCCAATCCCTGAGCCCTGATGGGCTCCCCTCCATCCCTCAGGCCCGGCCCCGCCTGGCCACCCTGGAGACTCACCCCGATGACCTTGCGGGCCCCGGCCTTGGCAGCAAACATGCAGAGGATGCCGGTGCCCGAGCCGACGTCCAGCACCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:49681988|49683958 hsa-miR-591 -9 0 1
chr19:49681988|49683958 hsa-miR-627-5p 0 0 1
chr19:49681988|49683958 hsa-miR-627-3p 0 0 1
chr19:49681988|49683958 hsa-miR-766-5p 0 0 1
chr19:49681988|49683958 hsa-miR-766-3p 0 0 1
chr19:49681988|49683958 hsa-miR-765 -15 0 1
chr19:49681988|49683958 hsa-miR-744-5p 0 0 1
chr19:49681988|49683958 hsa-miR-744-3p 0 0 1
chr19:49681988|49683958 hsa-miR-924 0 0 1
chr19:49681988|49683958 hsa-miR-939-5p 0 0 1
chr19:49681988|49683958 hsa-miR-939-3p 0 0 1
chr19:49681988|49683958 hsa-miR-1229-5p 0 0 1
chr19:49681988|49683958 hsa-miR-1229-3p 0 0 1
chr19:49681988|49683958 hsa-miR-1287-5p 0 0 1
chr19:49681988|49683958 hsa-miR-1287-3p 0 0 1
chr19:49681988|49683958 hsa-miR-1248 -1 0 1
chr19:49681988|49683958 hsa-miR-1266-5p 0 0 1
chr19:49681988|49683958 hsa-miR-1266-3p 0 0 1
chr19:49681988|49683958 hsa-miR-145-5p -3 0 1
chr19:49681988|49683958 hsa-miR-296-5p -7 0 1
chr19:49681988|49683958 hsa-miR-770-5p -15 0 1
chr19:49681988|49683958 hsa-miR-486-3p -7 0 1
chr19:49681988|49683958 hsa-miR-193a-5p -1 0 1
chr19:49681988|49683958 hsa-miR-330-3p -4 0 1
chr19:49681988|49683958 hsa-miR-1207-5p -9 0 1
chr19:49681988|49683958 hsa-miR-24 0 0 1
chr19:49681988|49683958 hsa-miR-663 0 0 1
chr19:49681988|49683958 hsa-miR-663a -16 1 0
chr19:49681988|49683958 hsa-miR-2861 -14 1 0
chr19:49681988|49683958 hsa-miR-4290 -4 1 0
chr19:49681988|49683958 hsa-miR-4330 -4 1 0
chr19:49681988|49683958 hsa-miR-4437 -21 1 0
chr19:49681988|49683958 hsa-miR-2392 -5 1 0
chr19:49681988|49683958 hsa-miR-4518 -16 1 0
chr19:49681988|49683958 hsa-miR-4534 -18 1 0
chr19:49681988|49683958 hsa-miR-5787 -19 1 0
chr19:49681988|49683958 hsa-miR-6132 -19 1 0
chr19:49681988|49683958 hsa-miR-12114 -18 1 0
chr19:49681988|49683958 hsa-miR-12128 -18 1 0
chr19:49681988|49683958 hsa-miR-6749-3p -6 1 0
chr19:49681988|49683958 hsa-miR-6757-5p -20 1 0
chr19:49681988|49683958 hsa-miR-6880-5p -20 1 0
chr19:49681988|49683958 hsa-miR-6875-3p -9 1 0
chr19:49681988|49683958 hsa-miR-6727-5p -22 1 0
chr19:49681988|49683958 hsa-miR-6721-5p -12 1 0
chr19:49681988|49683958 hsa-miR-6827-5p -10 1 0
chr19:49681988|49683958 hsa-miR-1343-3p -14 1 0
chr19:49681988|49683958 hsa-miR-5088-5p -45 1 0
chr19:49681988|49683958 hsa-miR-3127-5p -20 1 0
chr19:49681988|49683958 hsa-miR-1908-5p -9 1 0
chr19:49681988|49683958 hsa-miR-3667-3p -7 1 0
chr19:49681988|49683958 hsa-miR-6749-5p -23 1 0
chr19:49681988|49683958 hsa-miR-3922-5p -11 1 0
chr19:49681988|49683958 hsa-miR-1250-5p -17 1 0
chr19:49681988|49683958 hsa-miR-4778-3p -3 1 0
chr19:49681988|49683958 hsa-miR-6865-3p 0 1 0
chr19:49681988|49683958 hsa-miR-5088-3p -28 1 0
chr19:49681988|49683958 hsa-miR-4520-5p -8 1 0
chr19:49681988|49683958 hsa-miR-4763-3p -20 1 0
chr19:49681988|49683958 hsa-miR-6787-5p -15 1 0
chr19:49681988|49683958 hsa-miR-6752-5p -26 1 0
chr19:49681988|49683958 hsa-miR-6756-5p -25 1 0
chr19:49681988|49683958 hsa-miR-6803-5p -29 1 0
chr19:49681988|49683958 hsa-miR-6842-5p -15 1 0
chr19:49681988|49683958 hsa-miR-6851-5p -21 1 0
chr19:49681988|49683958 hsa-miR-1249-5p -23 1 0
chr19:49681988|49683958 hsa-miR-6722-3p -21 1 0
chr19:49681988|49683958 hsa-miR-6751-5p -19 1 0
chr19:49681988|49683958 hsa-miR-4685-3p -3 1 0
chr19:49681988|49683958 hsa-miR-5196-5p -13 1 0
chr19:49681988|49683958 hsa-miR-6780b-5p -6 1 0
chr19:49681988|49683958 hsa-miR-10396a-5p -15 1 0
chr19:49681988|49683958 hsa-miR-10396b-5p -19 1 0
chr19:49681988|49683958 hsa-miR-1909-3p -18 1 0
chr19:49681988|49683958 hsa-miR-328-5p -25 1 0
chr19:49681988|49683958 hsa-miR-4685-5p -23 1 0
chr19:49681988|49683958 hsa-miR-6724-5p -23 1 0
chr19:49681988|49683958 hsa-miR-6511a-3p -9 1 0
chr19:49681988|49683958 hsa-miR-6862-3p -9 1 0
chr19:49681988|49683958 hsa-miR-6511b-3p -8 1 0
chr19:49681988|49683958 hsa-miR-6783-3p -15 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:49681988|49683958
ORF Type ORF1
Protein Length 48
Nucleotide Length 144
Protein Sequence MSPDGLPSIPQARPRLATLETHPDDLAGPGLGSKHAEDAGARADVQHH
Nucleotide Sequence CTGAGCCCTGATGGGCTCCCCTCCATCCCTCAGGCCCGGCCCCGCCTGGCCACCCTGGAGACTCACCCCGATGACCTTGCGGGCCCCGGCCTTGGCAGCAAACATGCAGAGGATGCCGGTGCCCGAGCCGACGTCCAGCACCAC
CircID chr19:49681988|49683958
ORF Type ORF2
Protein Length 45
Nucleotide Length 135
Protein Sequence MMGSPPSLRPGPAWPPWRLTPMTLRAPALAANMQRMPVPEPTSST
Nucleotide Sequence CTGATGGGCTCCCCTCCATCCCTCAGGCCCGGCCCCGCCTGGCCACCCTGGAGACTCACCCCGATGACCTTGCGGGCCCCGGCCTTGGCAGCAAACATGCAGAGGATGCCGGTGCCCGAGCCGACGTCCAGCACC
CircID chr19:49681988|49683958
ORF Type ORF3
Protein Length 74
Nucleotide Length 225
Protein Sequence MDVGSGTGILCMFAAKAGARKVIGVSLQGGQAGPGLRDGGEPIRAQGLDGGDGGRGWVSPSLLPGPSDRVFQYL
Nucleotide Sequence CTGGACGTCGGCTCGGGCACCGGCATCCTCTGCATGTTTGCTGCCAAGGCCGGGGCCCGCAAGGTCATCGGGGTGAGTCTCCAGGGTGGCCAGGCGGGGCCGGGCCTGAGGGATGGAGGGGAGCCCATCAGGGCTCAGGGATTGGATGGAGGTGATGGGGGCAGGGGATGGGTCTCACCCTCCCTTCTTCCTGGGCCCTCAGATCGAGTGTTCCAGTATCTCTGA
CircID chr19:49681988|49683958
ORF Type ORF4
Protein Length 62
Nucleotide Length 186
Protein Sequence MEGSPSGLRDWMEVMGAGDGSHPPFFLGPQIECSSISDYAVKIVKANKLDHVVTIIKGKVEE
Nucleotide Sequence ATGGAGGGGAGCCCATCAGGGCTCAGGGATTGGATGGAGGTGATGGGGGCAGGGGATGGGTCTCACCCTCCCTTCTTCCTGGGCCCTCAGATCGAGTGTTCCAGTATCTCTGATTATGCGGTGAAGATCGTCAAAGCCAACAAGTTAGACCACGTGGTGACCATCATCAAGGGGAAGGTGGAGGAG
CircID chr19:49681988|49683958
ORF Type ORF5
Protein Length 41
Nucleotide Length 126
Protein Sequence MHVCCQGRGPQGHRGESPGWPGGAGPEGWRGAHQGSGIGWR
Nucleotide Sequence CTGCATGTTTGCTGCCAAGGCCGGGGCCCGCAAGGTCATCGGGGTGAGTCTCCAGGGTGGCCAGGCGGGGCCGGGCCTGAGGGATGGAGGGGAGCCCATCAGGGCTCAGGGATTGGATGGAGGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab