CircRNA Information

General Information
circRNA Basic Information
CircID chr19:49933605|49933841
Strand +
CircType exon
Host Gene ENSG00000169136.7;
Algorism CIRI2;
Sequence CTTCACGAAACACTGATTTTTTTTCTTAGAGCTAAAATGAACACCCAGTCACCAACTACAGCCCTGCCCTGCCCCTCCTCCCACTGGCCTGCTCATCTTCCCGCACTGCAAACCTGGCCGCCTTTAGCCTCCCTCCCTTAGCGTAGTGTCCCAAGGTCACCTAGCCTGCTTTTTGCCTGTAGGATATGGGTCCCCTTCTCAAAGCCCGCCCTGACTTACTTCCTCATTTGCATAGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:49933605|49933841 hsa-miR-224-5p 0 0 1
chr19:49933605|49933841 hsa-miR-224-3p 0 0 1
chr19:49933605|49933841 hsa-miR-134-5p 0 0 1
chr19:49933605|49933841 hsa-miR-134-3p 0 0 1
chr19:49933605|49933841 hsa-miR-579-5p 0 0 1
chr19:49933605|49933841 hsa-miR-579-3p 0 0 1
chr19:49933605|49933841 hsa-miR-580-5p 0 0 1
chr19:49933605|49933841 hsa-miR-580-3p 0 0 1
chr19:49933605|49933841 hsa-miR-609 0 0 1
chr19:49933605|49933841 hsa-miR-765 1 1 1
chr19:49933605|49933841 hsa-miR-1206 0 0 1
chr19:49933605|49933841 hsa-miR-1253 0 0 1
chr19:49933605|49933841 hsa-miR-1321 0 1 1
chr19:49933605|49933841 hsa-miR-486-3p 1 1 1
chr19:49933605|49933841 hsa-miR-423-5p 1 1 1
chr19:49933605|49933841 hsa-miR-1207-5p 1 1 1
chr19:49933605|49933841 hsa-miR-1302 0 1 1
chr19:49933605|49933841 hsa-miR-548c-3p 0 0 1
chr19:49933605|49933841 hsa-miR-1300 0 0 1
chr19:49933605|49933841 hsa-miR-612 1 0 0
chr19:49933605|49933841 hsa-miR-663a 1 0 0
chr19:49933605|49933841 hsa-miR-658 1 0 0
chr19:49933605|49933841 hsa-miR-762 1 0 0
chr19:49933605|49933841 hsa-miR-940 1 0 0
chr19:49933605|49933841 hsa-miR-1268a 1 0 0
chr19:49933605|49933841 hsa-miR-1275 1 0 0
chr19:49933605|49933841 hsa-miR-3132 1 0 0
chr19:49933605|49933841 hsa-miR-3137 1 0 0
chr19:49933605|49933841 hsa-miR-3141 1 1 0
chr19:49933605|49933841 hsa-miR-3147 1 0 0
chr19:49933605|49933841 hsa-miR-3154 1 0 0
chr19:49933605|49933841 hsa-miR-3175 1 0 0
chr19:49933605|49933841 hsa-miR-3178 1 0 0
chr19:49933605|49933841 hsa-miR-3188 1 0 0
chr19:49933605|49933841 hsa-miR-3196 1 0 0
chr19:49933605|49933841 hsa-miR-3197 1 0 0
chr19:49933605|49933841 hsa-miR-4298 1 1 0
chr19:49933605|49933841 hsa-miR-4270 1 0 0
chr19:49933605|49933841 hsa-miR-3918 1 0 0
chr19:49933605|49933841 hsa-miR-3937 1 0 0
chr19:49933605|49933841 hsa-miR-1268b 1 0 0
chr19:49933605|49933841 hsa-miR-4466 1 0 0
chr19:49933605|49933841 hsa-miR-3689c 1 0 0
chr19:49933605|49933841 hsa-miR-4479 1 0 0
chr19:49933605|49933841 hsa-miR-4487 1 0 0
chr19:49933605|49933841 hsa-miR-4488 1 0 0
chr19:49933605|49933841 hsa-miR-4492 1 0 0
chr19:49933605|49933841 hsa-miR-4498 1 0 0
chr19:49933605|49933841 hsa-miR-4505 1 0 0
chr19:49933605|49933841 hsa-miR-2392 1 0 0
chr19:49933605|49933841 hsa-miR-4508 1 0 0
chr19:49933605|49933841 hsa-miR-4510 1 1 0
chr19:49933605|49933841 hsa-miR-4516 1 0 0
chr19:49933605|49933841 hsa-miR-4519 1 0 0
chr19:49933605|49933841 hsa-miR-4525 1 0 0
chr19:49933605|49933841 hsa-miR-4533 1 0 0
chr19:49933605|49933841 hsa-miR-1587 1 0 0
chr19:49933605|49933841 hsa-miR-3960 1 0 0
chr19:49933605|49933841 hsa-miR-4651 1 0 0
chr19:49933605|49933841 hsa-miR-4654 1 0 0
chr19:49933605|49933841 hsa-miR-4656 1 0 0
chr19:49933605|49933841 hsa-miR-4657 1 0 0
chr19:49933605|49933841 hsa-miR-4675 0 1 0
chr19:49933605|49933841 hsa-miR-4688 1 1 0
chr19:49933605|49933841 hsa-miR-4689 1 0 0
chr19:49933605|49933841 hsa-miR-4706 1 0 0
chr19:49933605|49933841 hsa-miR-4710 1 0 0
chr19:49933605|49933841 hsa-miR-4736 1 0 0
chr19:49933605|49933841 hsa-miR-4739 1 1 0
chr19:49933605|49933841 hsa-miR-4741 1 0 0
chr19:49933605|49933841 hsa-miR-4748 1 0 0
chr19:49933605|49933841 hsa-miR-4784 1 0 0
chr19:49933605|49933841 hsa-miR-5090 1 0 0
chr19:49933605|49933841 hsa-miR-5093 1 0 0
chr19:49933605|49933841 hsa-miR-5194 1 0 0
chr19:49933605|49933841 hsa-miR-5698 1 0 0
chr19:49933605|49933841 hsa-miR-5787 1 0 0
chr19:49933605|49933841 hsa-miR-6069 1 0 0
chr19:49933605|49933841 hsa-miR-6077 1 0 0
chr19:49933605|49933841 hsa-miR-6085 1 0 0
chr19:49933605|49933841 hsa-miR-6088 1 0 0
chr19:49933605|49933841 hsa-miR-6090 1 0 0
chr19:49933605|49933841 hsa-miR-6127 1 1 0
chr19:49933605|49933841 hsa-miR-6131 1 0 0
chr19:49933605|49933841 hsa-miR-6132 1 1 0
chr19:49933605|49933841 hsa-miR-6133 1 1 0
chr19:49933605|49933841 hsa-miR-6165 1 0 0
chr19:49933605|49933841 hsa-miR-6860 1 1 0
chr19:49933605|49933841 hsa-miR-7150 1 0 0
chr19:49933605|49933841 hsa-miR-7704 1 0 0
chr19:49933605|49933841 hsa-miR-8072 1 0 0
chr19:49933605|49933841 hsa-miR-8085 1 0 0
chr19:49933605|49933841 hsa-miR-8089 1 0 0
chr19:49933605|49933841 hsa-miR-12128 1 0 0
chr19:49933605|49933841 hsa-miR-4433b-3p 1 0 0
chr19:49933605|49933841 hsa-miR-128-1-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6765-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6861-5p 1 0 0
chr19:49933605|49933841 hsa-miR-7106-5p 1 1 0
chr19:49933605|49933841 hsa-miR-6825-5p 1 1 0
chr19:49933605|49933841 hsa-miR-6894-5p 1 0 0
chr19:49933605|49933841 hsa-miR-1972 1 0 0
chr19:49933605|49933841 hsa-miR-4687-3p 1 0 0
chr19:49933605|49933841 hsa-miR-6799-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6510-5p 1 0 0
chr19:49933605|49933841 hsa-miR-766-5p 1 0 0
chr19:49933605|49933841 hsa-miR-5187-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6089 1 0 0
chr19:49933605|49933841 hsa-miR-3192-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6757-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6880-5p 1 0 0
chr19:49933605|49933841 hsa-miR-4695-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6746-5p 1 0 0
chr19:49933605|49933841 hsa-miR-4722-5p 1 0 0
chr19:49933605|49933841 hsa-miR-3677-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6727-5p 1 0 0
chr19:49933605|49933841 hsa-miR-4474-3p 1 0 0
chr19:49933605|49933841 hsa-miR-6721-5p 1 1 0
chr19:49933605|49933841 hsa-miR-197-5p 1 0 0
chr19:49933605|49933841 hsa-miR-5589-5p 0 1 0
chr19:49933605|49933841 hsa-miR-7845-5p 1 0 0
chr19:49933605|49933841 hsa-miR-3151-5p 1 0 0
chr19:49933605|49933841 hsa-miR-3180-3p 1 0 0
chr19:49933605|49933841 hsa-miR-6748-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6772-5p 1 0 0
chr19:49933605|49933841 hsa-miR-185-3p 1 0 0
chr19:49933605|49933841 hsa-miR-6829-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6732-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6798-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6760-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6881-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6782-5p 1 0 0
chr19:49933605|49933841 hsa-miR-30b-3p 1 0 0
chr19:49933605|49933841 hsa-miR-6786-5p 1 1 0
chr19:49933605|49933841 hsa-miR-6835-5p 1 0 0
chr19:49933605|49933841 hsa-miR-5088-5p 1 0 0
chr19:49933605|49933841 hsa-miR-7109-5p 1 0 0
chr19:49933605|49933841 hsa-miR-1229-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6784-5p 1 0 0
chr19:49933605|49933841 hsa-miR-4640-5p 1 0 0
chr19:49933605|49933841 hsa-miR-3127-5p 1 1 0
chr19:49933605|49933841 hsa-miR-1908-5p 1 0 0
chr19:49933605|49933841 hsa-miR-1228-5p 1 0 0
chr19:49933605|49933841 hsa-miR-296-3p 1 0 0
chr19:49933605|49933841 hsa-miR-6771-5p 1 0 0
chr19:49933605|49933841 hsa-miR-4690-5p 1 1 0
chr19:49933605|49933841 hsa-let-7b-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6823-5p 1 0 0
chr19:49933605|49933841 hsa-miR-92b-5p 1 0 0
chr19:49933605|49933841 hsa-miR-4732-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6749-5p 1 0 0
chr19:49933605|49933841 hsa-miR-4743-5p 1 0 0
chr19:49933605|49933841 hsa-miR-4446-3p 1 0 0
chr19:49933605|49933841 hsa-miR-149-3p 1 1 0
chr19:49933605|49933841 hsa-miR-937-5p 1 1 0
chr19:49933605|49933841 hsa-miR-6824-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6789-5p 1 0 0
chr19:49933605|49933841 hsa-miR-3162-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6800-5p 0 1 0
chr19:49933605|49933841 hsa-miR-2276-3p 1 0 0
chr19:49933605|49933841 hsa-miR-5010-5p 1 0 0
chr19:49933605|49933841 hsa-miR-7112-5p 1 1 0
chr19:49933605|49933841 hsa-miR-664b-5p 1 0 0
chr19:49933605|49933841 hsa-let-7e-5p 1 0 0
chr19:49933605|49933841 hsa-miR-4742-5p 0 1 0
chr19:49933605|49933841 hsa-miR-4727-3p 1 0 0
chr19:49933605|49933841 hsa-miR-744-5p 1 0 0
chr19:49933605|49933841 hsa-miR-4746-3p 1 0 0
chr19:49933605|49933841 hsa-miR-1295b-3p 1 0 0
chr19:49933605|49933841 hsa-miR-214-3p 1 0 0
chr19:49933605|49933841 hsa-miR-10400-5p 1 0 0
chr19:49933605|49933841 hsa-miR-1233-5p 1 1 0
chr19:49933605|49933841 hsa-miR-1273h-5p 1 1 0
chr19:49933605|49933841 hsa-miR-3689b-3p 1 0 0
chr19:49933605|49933841 hsa-miR-4763-3p 1 1 0
chr19:49933605|49933841 hsa-miR-6769b-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6778-5p 1 1 0
chr19:49933605|49933841 hsa-miR-6787-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6812-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6816-5p 1 1 0
chr19:49933605|49933841 hsa-miR-6870-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6893-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6775-5p 1 1 0
chr19:49933605|49933841 hsa-miR-1343-5p 1 0 0
chr19:49933605|49933841 hsa-miR-3180 1 0 0
chr19:49933605|49933841 hsa-miR-5001-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6743-5p 1 1 0
chr19:49933605|49933841 hsa-miR-6754-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6756-5p 1 1 0
chr19:49933605|49933841 hsa-miR-6813-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6815-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6851-5p 1 0 0
chr19:49933605|49933841 hsa-miR-7107-5p 1 0 0
chr19:49933605|49933841 hsa-miR-10401-5p 1 0 0
chr19:49933605|49933841 hsa-miR-11181-3p 1 1 0
chr19:49933605|49933841 hsa-miR-1249-5p 1 1 0
chr19:49933605|49933841 hsa-miR-6722-3p 1 0 0
chr19:49933605|49933841 hsa-miR-6779-5p 1 1 0
chr19:49933605|49933841 hsa-miR-6780a-5p 1 1 0
chr19:49933605|49933841 hsa-miR-6788-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6797-5p 1 1 0
chr19:49933605|49933841 hsa-miR-6808-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6879-5p 1 1 0
chr19:49933605|49933841 hsa-miR-7111-5p 1 1 0
chr19:49933605|49933841 hsa-miR-3620-5p 1 0 0
chr19:49933605|49933841 hsa-miR-4728-5p 1 1 0
chr19:49933605|49933841 hsa-miR-5196-5p 1 1 0
chr19:49933605|49933841 hsa-miR-6780b-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6836-5p 1 0 0
chr19:49933605|49933841 hsa-miR-10396a-5p 1 0 0
chr19:49933605|49933841 hsa-miR-10396b-5p 1 0 0
chr19:49933605|49933841 hsa-miR-10526-3p 1 0 0
chr19:49933605|49933841 hsa-miR-1237-5p 1 0 0
chr19:49933605|49933841 hsa-miR-1909-3p 1 0 0
chr19:49933605|49933841 hsa-miR-328-5p 1 1 0
chr19:49933605|49933841 hsa-miR-3689a-3p 1 0 0
chr19:49933605|49933841 hsa-miR-4632-5p 1 1 0
chr19:49933605|49933841 hsa-miR-4649-5p 1 0 0
chr19:49933605|49933841 hsa-miR-4685-5p 1 0 0
chr19:49933605|49933841 hsa-miR-4725-3p 1 0 0
chr19:49933605|49933841 hsa-miR-4726-5p 1 0 0
chr19:49933605|49933841 hsa-miR-4745-5p 1 0 0
chr19:49933605|49933841 hsa-miR-4749-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6729-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6735-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6738-5p 1 0 0
chr19:49933605|49933841 hsa-miR-675-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6777-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6794-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6795-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6846-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6848-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6858-5p 1 1 0
chr19:49933605|49933841 hsa-miR-6883-5p 1 1 0
chr19:49933605|49933841 hsa-miR-6887-5p 1 0 0
chr19:49933605|49933841 hsa-miR-3187-5p 1 0 0
chr19:49933605|49933841 hsa-miR-4436b-3p 1 0 0
chr19:49933605|49933841 hsa-miR-6845-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6885-5p 1 0 0
chr19:49933605|49933841 hsa-miR-939-5p 1 0 0
chr19:49933605|49933841 hsa-miR-4758-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6511b-5p 1 1 0
chr19:49933605|49933841 hsa-miR-30c-1-3p 1 0 0
chr19:49933605|49933841 hsa-miR-1914-3p 1 0 0
chr19:49933605|49933841 hsa-miR-7151-3p 0 1 0
chr19:49933605|49933841 hsa-miR-4646-5p 1 0 0
chr19:49933605|49933841 hsa-miR-4747-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6891-5p 1 0 0
chr19:49933605|49933841 hsa-miR-6785-5p 1 0 0
chr19:49933605|49933841 hsa-miR-3184-5p 1 0 0
chr19:49933605|49933841 hsa-miR-4676-5p 1 0 0
chr19:49933605|49933841 hsa-miR-3619-5p 1 0 0
chr19:49933605|49933841 hsa-miR-1255b-5p 1 0 0
chr19:49933605|49933841 hsa-miR-3059-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:49933605|49933841
ORF Type ORF1
Protein Length 42
Nucleotide Length 129
Protein Sequence MIFFLRAKMNTQSPTTALPCPSSHWPAHLPALQTWPPLASLP
Nucleotide Sequence CTGATTTTTTTTCTTAGAGCTAAAATGAACACCCAGTCACCAACTACAGCCCTGCCCTGCCCCTCCTCCCACTGGCCTGCTCATCTTCCCGCACTGCAAACCTGGCCGCCTTTAGCCTCCCTCCCTTAG
CircID chr19:49933605|49933841
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MPLLPLACSSSRTANLAAFSLPPLA
Nucleotide Sequence CTGCCCCTCCTCCCACTGGCCTGCTCATCTTCCCGCACTGCAAACCTGGCCGCCTTTAGCCTCCCTCCCTTAGCGTAG
CircID chr19:49933605|49933841
ORF Type ORF3
Protein Length 32
Nucleotide Length 99
Protein Sequence MGHYAKGGRLKAARFAVREDEQASGRRGRAGL
Nucleotide Sequence TTGGGACACTACGCTAAGGGAGGGAGGCTAAAGGCGGCCAGGTTTGCAGTGCGGGAAGATGAGCAGGCCAGTGGGAGGAGGGGCAGGGCAGGGCTGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab