CircRNA Information

General Information
circRNA Basic Information
CircID chr19:50280254|50280357
Strand +
CircType exon
Host Gene ENSG00000105357.14;
Algorism CIRI2;
Sequence GGCCCGCCCGTTCCCTGGCAGCTGCCTCCTCCTCCAGCTGCTCACGCAGCCCGGCTGCCTCAGCCTCCATGGCTCGCACCCGGGACCCCAAGGCCAATTTCGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:50280254|50280357 hsa-miR-22-5p 0 0 1
chr19:50280254|50280357 hsa-miR-22-3p 0 0 1
chr19:50280254|50280357 hsa-miR-604 0 0 1
chr19:50280254|50280357 hsa-miR-646 0 0 1
chr19:50280254|50280357 hsa-miR-650 1 1 1
chr19:50280254|50280357 hsa-miR-765 0 1 1
chr19:50280254|50280357 hsa-miR-1292-5p 0 0 1
chr19:50280254|50280357 hsa-miR-1292-3p 0 0 1
chr19:50280254|50280357 hsa-miR-1827 0 0 1
chr19:50280254|50280357 hsa-miR-615-5p 1 1 1
chr19:50280254|50280357 hsa-miR-485-5p 0 0 1
chr19:50280254|50280357 hsa-miR-1207-3p 0 0 1
chr19:50280254|50280357 hsa-miR-762 1 0 0
chr19:50280254|50280357 hsa-miR-1275 1 0 0
chr19:50280254|50280357 hsa-miR-3138 1 0 0
chr19:50280254|50280357 hsa-miR-3196 1 0 0
chr19:50280254|50280357 hsa-miR-4281 0 1 0
chr19:50280254|50280357 hsa-miR-3612 0 1 0
chr19:50280254|50280357 hsa-miR-3937 1 0 0
chr19:50280254|50280357 hsa-miR-4449 1 1 0
chr19:50280254|50280357 hsa-miR-3135b 0 1 0
chr19:50280254|50280357 hsa-miR-4466 1 0 0
chr19:50280254|50280357 hsa-miR-4467 1 0 0
chr19:50280254|50280357 hsa-miR-3960 1 0 0
chr19:50280254|50280357 hsa-miR-4656 1 1 0
chr19:50280254|50280357 hsa-miR-4734 1 0 0
chr19:50280254|50280357 hsa-miR-4739 1 0 0
chr19:50280254|50280357 hsa-miR-4741 1 0 0
chr19:50280254|50280357 hsa-miR-5572 0 1 0
chr19:50280254|50280357 hsa-miR-5787 1 0 0
chr19:50280254|50280357 hsa-miR-6133 1 0 0
chr19:50280254|50280357 hsa-miR-4433b-3p 1 0 0
chr19:50280254|50280357 hsa-miR-6765-5p 1 0 0
chr19:50280254|50280357 hsa-miR-7106-5p 1 0 0
chr19:50280254|50280357 hsa-miR-6894-5p 1 0 0
chr19:50280254|50280357 hsa-miR-6799-5p 1 0 0
chr19:50280254|50280357 hsa-miR-6880-5p 1 0 0
chr19:50280254|50280357 hsa-miR-7847-3p 1 1 0
chr19:50280254|50280357 hsa-miR-4695-5p 1 1 0
chr19:50280254|50280357 hsa-miR-4722-5p 1 0 0
chr19:50280254|50280357 hsa-miR-7154-3p 1 0 0
chr19:50280254|50280357 hsa-miR-1301-3p 1 1 0
chr19:50280254|50280357 hsa-miR-7160-5p 1 1 0
chr19:50280254|50280357 hsa-miR-6829-5p 1 1 0
chr19:50280254|50280357 hsa-miR-6732-5p 1 0 0
chr19:50280254|50280357 hsa-miR-6805-5p 1 0 0
chr19:50280254|50280357 hsa-miR-6798-5p 1 0 0
chr19:50280254|50280357 hsa-miR-6821-5p 1 1 0
chr19:50280254|50280357 hsa-miR-5006-5p 0 1 0
chr19:50280254|50280357 hsa-miR-4640-5p 1 0 0
chr19:50280254|50280357 hsa-let-7b-5p 0 1 0
chr19:50280254|50280357 hsa-miR-6501-5p 1 0 0
chr19:50280254|50280357 hsa-miR-6824-5p 1 0 0
chr19:50280254|50280357 hsa-miR-6869-5p 1 0 0
chr19:50280254|50280357 hsa-miR-2277-5p 1 0 0
chr19:50280254|50280357 hsa-miR-10400-5p 1 0 0
chr19:50280254|50280357 hsa-miR-1233-5p 1 0 0
chr19:50280254|50280357 hsa-miR-6778-5p 1 0 0
chr19:50280254|50280357 hsa-miR-6787-5p 1 0 0
chr19:50280254|50280357 hsa-miR-6812-5p 1 0 0
chr19:50280254|50280357 hsa-miR-6870-5p 1 0 0
chr19:50280254|50280357 hsa-miR-6893-5p 1 0 0
chr19:50280254|50280357 hsa-miR-6775-5p 1 0 0
chr19:50280254|50280357 hsa-miR-5001-5p 1 0 0
chr19:50280254|50280357 hsa-miR-6737-5p 1 0 0
chr19:50280254|50280357 hsa-miR-6743-5p 1 0 0
chr19:50280254|50280357 hsa-miR-6756-5p 1 0 0
chr19:50280254|50280357 hsa-miR-6803-5p 1 0 0
chr19:50280254|50280357 hsa-miR-6819-5p 1 0 0
chr19:50280254|50280357 hsa-miR-6851-5p 1 0 0
chr19:50280254|50280357 hsa-miR-11181-3p 1 1 0
chr19:50280254|50280357 hsa-miR-1249-5p 1 0 0
chr19:50280254|50280357 hsa-miR-6751-5p 1 0 0
chr19:50280254|50280357 hsa-miR-7111-5p 1 0 0
chr19:50280254|50280357 hsa-miR-4728-5p 1 0 0
chr19:50280254|50280357 hsa-miR-6780b-5p 1 0 0
chr19:50280254|50280357 hsa-miR-4632-5p 1 0 0
chr19:50280254|50280357 hsa-miR-4649-5p 1 0 0
chr19:50280254|50280357 hsa-miR-4725-3p 1 0 0
chr19:50280254|50280357 hsa-miR-6729-5p 1 0 0
chr19:50280254|50280357 hsa-miR-6848-5p 1 0 0
chr19:50280254|50280357 hsa-miR-6858-5p 1 1 0
chr19:50280254|50280357 hsa-miR-3187-5p 1 0 0
chr19:50280254|50280357 hsa-miR-939-5p 1 0 0
chr19:50280254|50280357 hsa-miR-3198 1 0 0
chr19:50280254|50280357 hsa-miR-6855-5p 1 1 0
chr19:50280254|50280357 hsa-miR-3173-3p 1 0 0
chr19:50280254|50280357 hsa-miR-6750-5p 0 1 0
chr19:50280254|50280357 hsa-miR-6791-5p 1 0 0
chr19:50280254|50280357 hsa-miR-6762-5p 1 0 0
chr19:50280254|50280357 hsa-miR-10400-3p 1 0 0
chr19:50280254|50280357 hsa-miR-6884-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:50280254|50280357
ORF Type ORF1
Protein Length 27
Nucleotide Length 81
Protein Sequence MPPPPAAHAARLPQPPWLAPGTPRPIS
Nucleotide Sequence CTGCCTCCTCCTCCAGCTGCTCACGCAGCCCGGCTGCCTCAGCCTCCATGGCTCGCACCCGGGACCCCAAGGCCAATTTCG
CircID chr19:50280254|50280357
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MAAASSSSCSRSPAASASMARTRDPKANFA
Nucleotide Sequence CTGGCAGCTGCCTCCTCCTCCAGCTGCTCACGCAGCCCGGCTGCCTCAGCCTCCATGGCTCGCACCCGGGACCCCAAGGCCAATTTCGCC
CircID chr19:50280254|50280357
ORF Type ORF3
Protein Length 32
Nucleotide Length 96
Protein Sequence MALGSRVRAMEAEAAGLREQLEEEAAARERAG
Nucleotide Sequence TTGGCCTTGGGGTCCCGGGTGCGAGCCATGGAGGCTGAGGCAGCCGGGCTGCGTGAGCAGCTGGAGGAGGAGGCAGCTGCCAGGGAACGGGCGGGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab