CircRNA Information

General Information
circRNA Basic Information
CircID chr19:50309797|50309934
Strand -
CircType exon
Host Gene ENSG00000105357.14;
Algorism CIRI2;
Sequence CCTGTCCCCAGATGCACTAACAGATGGGGCCCAGCCCCCTTCCTCCCTGGACCCCACGGGCCCCTGTCCCAGGAACCCCGCCCTCTGACTTCTTGCCCTTTGGAAATGGTGCAGCACTCTGGCATTTATCACCCCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:50309797|50309934 hsa-miR-31-5p 0 0 1
chr19:50309797|50309934 hsa-miR-31-3p 0 0 1
chr19:50309797|50309934 hsa-miR-130a-5p 0 0 1
chr19:50309797|50309934 hsa-miR-130a-3p 0 0 1
chr19:50309797|50309934 hsa-miR-301a-5p 0 0 1
chr19:50309797|50309934 hsa-miR-301a-3p 0 0 1
chr19:50309797|50309934 hsa-miR-130b-5p 0 0 1
chr19:50309797|50309934 hsa-miR-130b-3p 0 0 1
chr19:50309797|50309934 hsa-miR-637 0 0 1
chr19:50309797|50309934 hsa-miR-454-5p 0 0 1
chr19:50309797|50309934 hsa-miR-454-3p 0 0 1
chr19:50309797|50309934 hsa-miR-301b-5p 0 0 1
chr19:50309797|50309934 hsa-miR-301b-3p 0 0 1
chr19:50309797|50309934 hsa-miR-1321 0 0 1
chr19:50309797|50309934 hsa-miR-296-5p 0 0 1
chr19:50309797|50309934 hsa-miR-512-3p 0 1 1
chr19:50309797|50309934 hsa-miR-615-5p 0 0 1
chr19:50309797|50309934 hsa-miR-767-5p 0 0 1
chr19:50309797|50309934 hsa-miR-1302 0 0 1
chr19:50309797|50309934 hsa-miR-663 0 0 1
chr19:50309797|50309934 hsa-miR-198 1 0 0
chr19:50309797|50309934 hsa-miR-608 1 0 0
chr19:50309797|50309934 hsa-miR-663a 1 1 0
chr19:50309797|50309934 hsa-miR-658 1 0 0
chr19:50309797|50309934 hsa-miR-762 1 1 0
chr19:50309797|50309934 hsa-miR-759 0 1 0
chr19:50309797|50309934 hsa-miR-1275 1 0 0
chr19:50309797|50309934 hsa-miR-3141 1 0 0
chr19:50309797|50309934 hsa-miR-3170 0 1 0
chr19:50309797|50309934 hsa-miR-3196 1 0 0
chr19:50309797|50309934 hsa-miR-4298 0 1 0
chr19:50309797|50309934 hsa-miR-4270 0 1 0
chr19:50309797|50309934 hsa-miR-4271 1 0 0
chr19:50309797|50309934 hsa-miR-4281 1 0 0
chr19:50309797|50309934 hsa-miR-3659 1 0 0
chr19:50309797|50309934 hsa-miR-1268b 1 0 0
chr19:50309797|50309934 hsa-miR-4441 0 1 0
chr19:50309797|50309934 hsa-miR-4488 1 0 0
chr19:50309797|50309934 hsa-miR-4492 0 1 0
chr19:50309797|50309934 hsa-miR-4505 1 0 0
chr19:50309797|50309934 hsa-miR-4651 1 0 0
chr19:50309797|50309934 hsa-miR-4654 1 0 0
chr19:50309797|50309934 hsa-miR-4688 1 0 0
chr19:50309797|50309934 hsa-miR-4706 1 0 0
chr19:50309797|50309934 hsa-miR-4721 1 0 0
chr19:50309797|50309934 hsa-miR-4739 1 1 0
chr19:50309797|50309934 hsa-miR-5572 1 0 0
chr19:50309797|50309934 hsa-miR-5787 1 0 0
chr19:50309797|50309934 hsa-miR-6133 1 1 0
chr19:50309797|50309934 hsa-miR-8089 1 1 0
chr19:50309797|50309934 hsa-miR-504-3p 1 0 0
chr19:50309797|50309934 hsa-miR-7155-5p 1 0 0
chr19:50309797|50309934 hsa-miR-6747-5p 1 0 0
chr19:50309797|50309934 hsa-miR-7106-5p 0 1 0
chr19:50309797|50309934 hsa-miR-6894-5p 1 1 0
chr19:50309797|50309934 hsa-miR-766-5p 0 1 0
chr19:50309797|50309934 hsa-miR-6089 1 0 0
chr19:50309797|50309934 hsa-miR-6873-5p 1 0 0
chr19:50309797|50309934 hsa-miR-23b-5p 0 1 0
chr19:50309797|50309934 hsa-miR-3189-5p 1 1 0
chr19:50309797|50309934 hsa-miR-6742-5p 1 0 0
chr19:50309797|50309934 hsa-miR-3180-3p 1 0 0
chr19:50309797|50309934 hsa-miR-6793-5p 1 0 0
chr19:50309797|50309934 hsa-miR-6796-5p 1 0 0
chr19:50309797|50309934 hsa-miR-185-3p 0 1 0
chr19:50309797|50309934 hsa-miR-6732-5p 1 0 0
chr19:50309797|50309934 hsa-miR-6805-5p 1 0 0
chr19:50309797|50309934 hsa-miR-23a-5p 1 1 0
chr19:50309797|50309934 hsa-miR-6798-5p 1 0 0
chr19:50309797|50309934 hsa-miR-6810-5p 0 1 0
chr19:50309797|50309934 hsa-miR-1343-3p 0 1 0
chr19:50309797|50309934 hsa-miR-6786-5p 1 0 0
chr19:50309797|50309934 hsa-miR-6835-5p 1 0 0
chr19:50309797|50309934 hsa-miR-7109-5p 1 0 0
chr19:50309797|50309934 hsa-miR-1226-5p 1 0 0
chr19:50309797|50309934 hsa-miR-4640-5p 1 0 0
chr19:50309797|50309934 hsa-miR-1228-5p 1 0 0
chr19:50309797|50309934 hsa-miR-6749-5p 1 0 0
chr19:50309797|50309934 hsa-miR-3202 0 1 0
chr19:50309797|50309934 hsa-miR-4787-5p 1 0 0
chr19:50309797|50309934 hsa-miR-149-3p 1 1 0
chr19:50309797|50309934 hsa-miR-937-5p 1 0 0
chr19:50309797|50309934 hsa-miR-6781-5p 1 0 0
chr19:50309797|50309934 hsa-miR-519d-5p 1 0 0
chr19:50309797|50309934 hsa-miR-7113-5p 0 1 0
chr19:50309797|50309934 hsa-miR-500a-3p 1 0 0
chr19:50309797|50309934 hsa-miR-1207-5p 1 0 0
chr19:50309797|50309934 hsa-miR-4763-3p 1 0 0
chr19:50309797|50309934 hsa-miR-6812-5p 1 0 0
chr19:50309797|50309934 hsa-miR-6816-5p 1 0 0
chr19:50309797|50309934 hsa-miR-6870-5p 1 0 0
chr19:50309797|50309934 hsa-miR-5001-5p 1 0 0
chr19:50309797|50309934 hsa-miR-6737-5p 1 0 0
chr19:50309797|50309934 hsa-miR-6743-5p 1 0 0
chr19:50309797|50309934 hsa-miR-6752-5p 1 1 0
chr19:50309797|50309934 hsa-miR-6756-5p 1 0 0
chr19:50309797|50309934 hsa-miR-6803-5p 1 1 0
chr19:50309797|50309934 hsa-miR-6813-5p 1 0 0
chr19:50309797|50309934 hsa-miR-6819-5p 1 0 0
chr19:50309797|50309934 hsa-miR-6842-5p 1 1 0
chr19:50309797|50309934 hsa-miR-7110-5p 1 0 0
chr19:50309797|50309934 hsa-miR-1249-5p 1 1 0
chr19:50309797|50309934 hsa-miR-6722-3p 1 0 0
chr19:50309797|50309934 hsa-miR-6751-5p 1 1 0
chr19:50309797|50309934 hsa-miR-6797-5p 1 1 0
chr19:50309797|50309934 hsa-miR-6879-5p 1 0 0
chr19:50309797|50309934 hsa-miR-3620-5p 1 0 0
chr19:50309797|50309934 hsa-miR-1237-5p 1 0 0
chr19:50309797|50309934 hsa-miR-4632-5p 1 0 0
chr19:50309797|50309934 hsa-miR-4649-5p 1 0 0
chr19:50309797|50309934 hsa-miR-4685-5p 1 0 0
chr19:50309797|50309934 hsa-miR-4701-3p 1 0 0
chr19:50309797|50309934 hsa-miR-4726-5p 1 0 0
chr19:50309797|50309934 hsa-miR-4745-5p 1 0 0
chr19:50309797|50309934 hsa-miR-6729-5p 1 0 0
chr19:50309797|50309934 hsa-miR-6735-5p 1 0 0
chr19:50309797|50309934 hsa-miR-6846-5p 1 1 0
chr19:50309797|50309934 hsa-miR-6848-5p 1 1 0
chr19:50309797|50309934 hsa-miR-4436b-3p 1 1 0
chr19:50309797|50309934 hsa-miR-939-5p 1 0 0
chr19:50309797|50309934 hsa-miR-1914-3p 1 0 0
chr19:50309797|50309934 hsa-miR-4665-5p 1 0 0
chr19:50309797|50309934 hsa-miR-6855-5p 1 1 0
chr19:50309797|50309934 hsa-miR-4747-5p 0 1 0
chr19:50309797|50309934 hsa-miR-6724-5p 1 1 0
chr19:50309797|50309934 hsa-miR-10400-3p 1 0 0
chr19:50309797|50309934 hsa-miR-6718-5p 1 0 0
chr19:50309797|50309934 hsa-miR-372-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:50309797|50309934
ORF Type ORF1
Protein Length 25
Nucleotide Length 75
Protein Sequence MSQEPRPLTSCPLEMVQHSGIYHPH
Nucleotide Sequence CTGTCCCAGGAACCCCGCCCTCTGACTTCTTGCCCTTTGGAAATGGTGCAGCACTCTGGCATTTATCACCCCCAC
CircID chr19:50309797|50309934
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence LSPDALTDGAQPPSSLDPTGPCPRNPAL
Nucleotide Sequence CTGTCCCCAGATGCACTAACAGATGGGGCCCAGCCCCCTTCCTCCCTGGACCCCACGGGCCCCTGTCCCAGGAACCCCGCCCTCTGA
CircID chr19:50309797|50309934
ORF Type ORF3
Protein Length 38
Nucleotide Length 114
Protein Sequence MGPSPLPPWTPRAPVPGTPPSDFLPFGNGAALWHLSPP
Nucleotide Sequence ATGGGGCCCAGCCCCCTTCCTCCCTGGACCCCACGGGCCCCTGTCCCAGGAACCCCGCCCTCTGACTTCTTGCCCTTTGGAAATGGTGCAGCACTCTGGCATTTATCACCCCCA
CircID chr19:50309797|50309934
ORF Type ORF4
Protein Length 38
Nucleotide Length 114
Protein Sequence MHHFQRARSQRAGFLGQGPVGSREEGGWAPSVSASGDR
Nucleotide Sequence CTGCACCATTTCCAAAGGGCAAGAAGTCAGAGGGCGGGGTTCCTGGGACAGGGGCCCGTGGGGTCCAGGGAGGAAGGGGGCTGGGCCCCATCTGTTAGTGCATCTGGGGACAGG
CircID chr19:50309797|50309934
ORF Type ORF5
Protein Length 41
Nucleotide Length 123
Protein Sequence MPECCTISKGQEVRGRGSWDRGPWGPGRKGAGPHLLVHLGT
Nucleotide Sequence ATGCCAGAGTGCTGCACCATTTCCAAAGGGCAAGAAGTCAGAGGGCGGGGTTCCTGGGACAGGGGCCCGTGGGGTCCAGGGAGGAAGGGGGCTGGGCCCCATCTGTTAGTGCATCTGGGGACA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab