CircRNA Information

General Information
circRNA Basic Information
CircID chr19:50376547|50376826
Strand +
CircType exon
Host Gene ENSG00000131408.12;
Algorism CIRI2;
Sequence CTCTCTCCAGGTCCCGCCCCTCTCCAAGCAACAGCGGGGGGCGGGGCTCATGGCTGCGCGCGGGGGTCTCGTGGACGGCCTCTCGCGGAGTGAACTACTCCTGTTGCCCTGGAAACAGCCGCGGGAGGCGCGAATTACCGAGGGGAGGAAATGGAAGGAGAGAAGGGGGCAGAGCGGAGTACGCGGGGAGCGCCGAGAAGCCCCGGGTTCGGGGCTCCTCCTGCGTCTCCCCACTCTCGGGTGCACCTACCTGGGTTCCCTTGCTCTGCTTTTCTTCGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:50376547|50376826 hsa-miR-185-5p 0 0 1
chr19:50376547|50376826 hsa-miR-185-3p 0 0 1
chr19:50376547|50376826 hsa-miR-492 0 0 1
chr19:50376547|50376826 hsa-miR-432-5p 0 0 1
chr19:50376547|50376826 hsa-miR-432-3p 0 0 1
chr19:50376547|50376826 hsa-miR-572 0 0 1
chr19:50376547|50376826 hsa-miR-619-5p 0 0 1
chr19:50376547|50376826 hsa-miR-619-3p 0 0 1
chr19:50376547|50376826 hsa-miR-620 0 0 1
chr19:50376547|50376826 hsa-miR-631 0 0 1
chr19:50376547|50376826 hsa-miR-765 0 0 1
chr19:50376547|50376826 hsa-miR-939-5p 0 0 1
chr19:50376547|50376826 hsa-miR-939-3p 0 0 1
chr19:50376547|50376826 hsa-miR-942-5p 0 0 1
chr19:50376547|50376826 hsa-miR-942-3p 0 0 1
chr19:50376547|50376826 hsa-miR-1238-5p 0 0 1
chr19:50376547|50376826 hsa-miR-1238-3p 0 0 1
chr19:50376547|50376826 hsa-miR-1270 0 0 1
chr19:50376547|50376826 hsa-miR-1281 1 0 1
chr19:50376547|50376826 hsa-miR-1307-5p 0 0 1
chr19:50376547|50376826 hsa-miR-1307-3p 0 0 1
chr19:50376547|50376826 hsa-miR-139-3p 0 1 1
chr19:50376547|50376826 hsa-miR-1225-3p 0 1 1
chr19:50376547|50376826 hsa-miR-491-5p 0 0 1
chr19:50376547|50376826 hsa-miR-423-5p 0 1 1
chr19:50376547|50376826 hsa-miR-1244 0 1 1
chr19:50376547|50376826 hsa-miR-324-3p 0 0 1
chr19:50376547|50376826 hsa-miR-483-3p 0 0 1
chr19:50376547|50376826 hsa-miR-1233 0 0 1
chr19:50376547|50376826 hsa-miR-346 1 0 0
chr19:50376547|50376826 hsa-miR-1469 0 1 0
chr19:50376547|50376826 hsa-miR-1471 0 1 0
chr19:50376547|50376826 hsa-miR-1913 1 1 0
chr19:50376547|50376826 hsa-miR-718 1 0 0
chr19:50376547|50376826 hsa-miR-4313 1 0 0
chr19:50376547|50376826 hsa-miR-4290 1 0 0
chr19:50376547|50376826 hsa-miR-3615 1 0 0
chr19:50376547|50376826 hsa-miR-4469 1 0 0
chr19:50376547|50376826 hsa-miR-4479 0 1 0
chr19:50376547|50376826 hsa-miR-3978 1 0 0
chr19:50376547|50376826 hsa-miR-4683 1 0 0
chr19:50376547|50376826 hsa-miR-5193 1 0 0
chr19:50376547|50376826 hsa-miR-7703 1 0 0
chr19:50376547|50376826 hsa-miR-12131 0 1 0
chr19:50376547|50376826 hsa-miR-6749-3p 1 1 0
chr19:50376547|50376826 hsa-miR-18a-3p 1 0 0
chr19:50376547|50376826 hsa-miR-6836-3p 1 0 0
chr19:50376547|50376826 hsa-miR-149-5p 1 0 0
chr19:50376547|50376826 hsa-miR-3150a-3p 0 1 0
chr19:50376547|50376826 hsa-miR-6825-5p 0 1 0
chr19:50376547|50376826 hsa-miR-4687-3p 0 1 0
chr19:50376547|50376826 hsa-miR-4708-5p 1 0 0
chr19:50376547|50376826 hsa-miR-1233-3p 0 1 0
chr19:50376547|50376826 hsa-miR-6892-3p 1 0 0
chr19:50376547|50376826 hsa-miR-769-5p 1 0 0
chr19:50376547|50376826 hsa-miR-4722-5p 0 1 0
chr19:50376547|50376826 hsa-miR-6873-3p 1 1 0
chr19:50376547|50376826 hsa-miR-7110-3p 1 0 0
chr19:50376547|50376826 hsa-miR-1915-5p 1 0 0
chr19:50376547|50376826 hsa-miR-6832-3p 1 1 0
chr19:50376547|50376826 hsa-miR-6845-3p 1 1 0
chr19:50376547|50376826 hsa-miR-423-3p 1 0 0
chr19:50376547|50376826 hsa-miR-3180-3p 0 1 0
chr19:50376547|50376826 hsa-miR-877-3p 1 0 0
chr19:50376547|50376826 hsa-miR-4655-3p 1 0 0
chr19:50376547|50376826 hsa-miR-3130-3p 0 1 0
chr19:50376547|50376826 hsa-miR-6728-3p 1 1 0
chr19:50376547|50376826 hsa-miR-6882-3p 1 0 0
chr19:50376547|50376826 hsa-miR-6740-3p 1 0 0
chr19:50376547|50376826 hsa-miR-615-3p 0 1 0
chr19:50376547|50376826 hsa-miR-4436b-5p 1 0 0
chr19:50376547|50376826 hsa-miR-6815-3p 0 1 0
chr19:50376547|50376826 hsa-miR-6763-3p 1 0 0
chr19:50376547|50376826 hsa-miR-4693-3p 0 1 0
chr19:50376547|50376826 hsa-miR-6784-5p 0 1 0
chr19:50376547|50376826 hsa-miR-4640-5p 1 0 0
chr19:50376547|50376826 hsa-miR-6753-5p 1 0 0
chr19:50376547|50376826 hsa-miR-4715-3p 1 0 0
chr19:50376547|50376826 hsa-miR-5001-3p 1 0 0
chr19:50376547|50376826 hsa-miR-7113-3p 1 1 0
chr19:50376547|50376826 hsa-miR-3679-3p 1 0 0
chr19:50376547|50376826 hsa-miR-3667-3p 1 0 0
chr19:50376547|50376826 hsa-miR-4732-5p 0 1 0
chr19:50376547|50376826 hsa-miR-6878-3p 1 0 0
chr19:50376547|50376826 hsa-miR-6809-3p 1 1 0
chr19:50376547|50376826 hsa-miR-7111-3p 1 1 0
chr19:50376547|50376826 hsa-miR-1266-3p 1 0 0
chr19:50376547|50376826 hsa-miR-4667-3p 1 0 0
chr19:50376547|50376826 hsa-miR-149-3p 0 1 0
chr19:50376547|50376826 hsa-miR-2115-5p 1 0 0
chr19:50376547|50376826 hsa-miR-1237-3p 1 0 0
chr19:50376547|50376826 hsa-miR-1236-3p 1 1 0
chr19:50376547|50376826 hsa-miR-6743-3p 1 1 0
chr19:50376547|50376826 hsa-miR-6889-3p 1 0 0
chr19:50376547|50376826 hsa-miR-7106-3p 1 0 0
chr19:50376547|50376826 hsa-miR-6828-3p 1 1 0
chr19:50376547|50376826 hsa-miR-4664-3p 1 0 0
chr19:50376547|50376826 hsa-miR-6778-3p 1 0 0
chr19:50376547|50376826 hsa-miR-6752-3p 1 0 0
chr19:50376547|50376826 hsa-miR-6758-3p 1 0 0
chr19:50376547|50376826 hsa-miR-6826-3p 1 0 0
chr19:50376547|50376826 hsa-miR-6886-3p 1 1 0
chr19:50376547|50376826 hsa-miR-5088-3p 1 1 0
chr19:50376547|50376826 hsa-miR-6738-3p 1 0 0
chr19:50376547|50376826 hsa-miR-6795-3p 0 1 0
chr19:50376547|50376826 hsa-miR-6859-3p 0 1 0
chr19:50376547|50376826 hsa-miR-6760-3p 1 0 0
chr19:50376547|50376826 hsa-miR-6880-3p 1 0 0
chr19:50376547|50376826 hsa-miR-3124-3p 1 0 0
chr19:50376547|50376826 hsa-miR-1178-3p 1 0 0
chr19:50376547|50376826 hsa-miR-6748-3p 1 0 0
chr19:50376547|50376826 hsa-miR-6851-3p 1 0 0
chr19:50376547|50376826 hsa-miR-3173-5p 1 0 0
chr19:50376547|50376826 hsa-miR-6734-3p 1 0 0
chr19:50376547|50376826 hsa-miR-6515-3p 1 0 0
chr19:50376547|50376826 hsa-miR-6846-3p 1 0 0
chr19:50376547|50376826 hsa-miR-6812-3p 1 0 0
chr19:50376547|50376826 hsa-miR-1249-3p 1 0 0
chr19:50376547|50376826 hsa-miR-6780b-3p 1 0 0
chr19:50376547|50376826 hsa-miR-6800-3p 1 0 0
chr19:50376547|50376826 hsa-miR-6885-3p 1 0 0
chr19:50376547|50376826 hsa-miR-6816-5p 0 1 0
chr19:50376547|50376826 hsa-miR-6775-5p 1 0 0
chr19:50376547|50376826 hsa-miR-6756-5p 0 1 0
chr19:50376547|50376826 hsa-miR-6763-5p 0 1 0
chr19:50376547|50376826 hsa-miR-3127-3p 1 0 0
chr19:50376547|50376826 hsa-miR-320a-5p 1 1 0
chr19:50376547|50376826 hsa-miR-4685-3p 1 0 0
chr19:50376547|50376826 hsa-miR-1237-5p 0 1 0
chr19:50376547|50376826 hsa-miR-4685-5p 1 1 0
chr19:50376547|50376826 hsa-miR-4745-5p 0 1 0
chr19:50376547|50376826 hsa-miR-6791-3p 1 0 0
chr19:50376547|50376826 hsa-miR-6876-5p 1 0 0
chr19:50376547|50376826 hsa-miR-6750-5p 0 1 0
chr19:50376547|50376826 hsa-miR-3184-5p 0 1 0
chr19:50376547|50376826 hsa-miR-10398-5p 1 1 0
chr19:50376547|50376826 hsa-miR-2682-3p 1 0 0
chr19:50376547|50376826 hsa-miR-6822-5p 0 1 0
chr19:50376547|50376826 hsa-miR-6756-3p 1 1 0
chr19:50376547|50376826 hsa-miR-6792-3p 1 0 0
chr19:50376547|50376826 hsa-miR-6805-3p 1 0 0
chr19:50376547|50376826 hsa-miR-6810-3p 1 0 0
chr19:50376547|50376826 hsa-miR-6829-3p 1 0 0
chr19:50376547|50376826 hsa-miR-6837-5p 0 1 0
chr19:50376547|50376826 hsa-miR-3059-5p 1 0 0
chr19:50376547|50376826 hsa-miR-4723-3p 1 0 0
chr19:50376547|50376826 hsa-miR-6769b-3p 1 0 0
chr19:50376547|50376826 hsa-miR-6891-3p 1 0 0
chr19:50376547|50376826 hsa-miR-6827-3p 1 0 0
chr19:50376547|50376826 hsa-miR-4769-3p 1 0 0
chr19:50376547|50376826 hsa-miR-6833-3p 1 1 0
chr19:50376547|50376826 hsa-miR-6824-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:50376547|50376826
ORF Type ORF1
Protein Length 57
Nucleotide Length 171
Protein Sequence METAAGGANYRGEEMEGEKGAERSTRGAPRSPGFGAPPASPHSRVHLPGFPCSAFLR
Nucleotide Sequence CTGGAAACAGCCGCGGGAGGCGCGAATTACCGAGGGGAGGAAATGGAAGGAGAGAAGGGGGCAGAGCGGAGTACGCGGGGAGCGCCGAGAAGCCCCGGGTTCGGGGCTCCTCCTGCGTCTCCCCACTCTCGGGTGCACCTACCTGGGTTCCCTTGCTCTGCTTTTCTTCGT
CircID chr19:50376547|50376826
ORF Type ORF2
Protein Length 77
Nucleotide Length 231
Protein Sequence MAARGGLVDGLSRSELLLLPWKQPREARITEGRKWKERRGQSGVRGERREAPGSGLLLRLPTLGCTYLGSLALLFFV
Nucleotide Sequence ATGGCTGCGCGCGGGGGTCTCGTGGACGGCCTCTCGCGGAGTGAACTACTCCTGTTGCCCTGGAAACAGCCGCGGGAGGCGCGAATTACCGAGGGGAGGAAATGGAAGGAGAGAAGGGGGCAGAGCGGAGTACGCGGGGAGCGCCGAGAAGCCCCGGGTTCGGGGCTCCTCCTGCGTCTCCCCACTCTCGGGTGCACCTACCTGGGTTCCCTTGCTCTGCTTTTCTTCGTC
CircID chr19:50376547|50376826
ORF Type ORF3
Protein Length 75
Nucleotide Length 225
Protein Sequence MRAGVSWTASRGVNYSCCPGNSRGRRELPRGGNGRREGGRAEYAGSAEKPRVRGSSCVSPLSGAPTWVPLLCFSS
Nucleotide Sequence CTGCGCGCGGGGGTCTCGTGGACGGCCTCTCGCGGAGTGAACTACTCCTGTTGCCCTGGAAACAGCCGCGGGAGGCGCGAATTACCGAGGGGAGGAAATGGAAGGAGAGAAGGGGGCAGAGCGGAGTACGCGGGGAGCGCCGAGAAGCCCCGGGTTCGGGGCTCCTCCTGCGTCTCCCCACTCTCGGGTGCACCTACCTGGGTTCCCTTGCTCTGCTTTTCTTCG
CircID chr19:50376547|50376826
ORF Type ORF4
Protein Length 25
Nucleotide Length 78
Protein Sequence MPPSLLPFPPLGNSRLPRLFPGQQE
Nucleotide Sequence CTGCCCCCTTCTCTCCTTCCATTTCCTCCCCTCGGTAATTCGCGCCTCCCGCGGCTGTTTCCAGGGCAACAGGAGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab