CircRNA Information

General Information
circRNA Basic Information
CircID chr19:50482389|50482597
Strand -
CircType exon
Host Gene ENSG00000161671.15;
Algorism CIRI2;
Sequence CTGGGCCAGCCCCTTGTCCTCTGCCTTCTGCTGGCAGAGGAGCAGCTGGACTGGGGCCTTTGGCACAGCAGCCGGTGTCTCCTGCGCCCGCCTCCCCCATGGCCCCATGCAGCCCCAGGGGCTTCCCCCCTGCCCATGGAGTAGAGCCCGAGATCCTGGCCACTATGCCAGTTCTGACCTCGCATCCCCCTACCCCGAGCCCATGCAGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:50482389|50482597 hsa-miR-217-5p 0 0 1
chr19:50482389|50482597 hsa-miR-217-3p 0 0 1
chr19:50482389|50482597 hsa-miR-625-5p 0 0 1
chr19:50482389|50482597 hsa-miR-625-3p 0 0 1
chr19:50482389|50482597 hsa-miR-298 0 1 1
chr19:50482389|50482597 hsa-miR-922 0 1 1
chr19:50482389|50482597 hsa-miR-1227-5p 0 0 1
chr19:50482389|50482597 hsa-miR-1227-3p 0 0 1
chr19:50482389|50482597 hsa-miR-1202 0 1 1
chr19:50482389|50482597 hsa-miR-1275 0 0 1
chr19:50482389|50482597 hsa-miR-671-5p 1 1 1
chr19:50482389|50482597 hsa-miR-508-5p 0 0 1
chr19:50482389|50482597 hsa-miR-331-3p 0 1 1
chr19:50482389|50482597 hsa-miR-1207-5p 1 0 1
chr19:50482389|50482597 hsa-miR-455-3p 0 0 1
chr19:50482389|50482597 hsa-miR-612 1 0 0
chr19:50482389|50482597 hsa-miR-638 1 0 0
chr19:50482389|50482597 hsa-miR-663a 1 0 0
chr19:50482389|50482597 hsa-miR-762 1 0 0
chr19:50482389|50482597 hsa-miR-760 1 0 0
chr19:50482389|50482597 hsa-miR-1268a 1 0 0
chr19:50482389|50482597 hsa-miR-1538 1 0 0
chr19:50482389|50482597 hsa-miR-2861 1 0 0
chr19:50482389|50482597 hsa-miR-3141 1 0 0
chr19:50482389|50482597 hsa-miR-3196 1 0 0
chr19:50482389|50482597 hsa-miR-4268 0 1 0
chr19:50482389|50482597 hsa-miR-4292 0 1 0
chr19:50482389|50482597 hsa-miR-1268b 1 0 0
chr19:50482389|50482597 hsa-miR-4437 1 0 0
chr19:50482389|50482597 hsa-miR-4488 1 0 0
chr19:50482389|50482597 hsa-miR-4525 1 1 0
chr19:50482389|50482597 hsa-miR-4530 0 1 0
chr19:50482389|50482597 hsa-miR-1587 1 0 0
chr19:50482389|50482597 hsa-miR-4651 1 0 0
chr19:50482389|50482597 hsa-miR-4656 1 0 0
chr19:50482389|50482597 hsa-miR-4674 1 1 0
chr19:50482389|50482597 hsa-miR-4706 1 0 0
chr19:50482389|50482597 hsa-miR-4739 0 1 0
chr19:50482389|50482597 hsa-miR-4741 1 0 0
chr19:50482389|50482597 hsa-miR-4767 1 1 0
chr19:50482389|50482597 hsa-miR-5090 1 0 0
chr19:50482389|50482597 hsa-miR-5572 1 0 0
chr19:50482389|50482597 hsa-miR-5787 1 0 0
chr19:50482389|50482597 hsa-miR-6085 0 1 0
chr19:50482389|50482597 hsa-miR-7150 1 0 0
chr19:50482389|50482597 hsa-miR-8089 1 0 0
chr19:50482389|50482597 hsa-miR-6747-5p 1 0 0
chr19:50482389|50482597 hsa-miR-6765-5p 1 1 0
chr19:50482389|50482597 hsa-miR-6861-5p 1 0 0
chr19:50482389|50482597 hsa-miR-6825-5p 1 1 0
chr19:50482389|50482597 hsa-miR-6894-5p 1 0 0
chr19:50482389|50482597 hsa-miR-6799-5p 1 0 0
chr19:50482389|50482597 hsa-miR-6089 1 0 0
chr19:50482389|50482597 hsa-miR-6757-5p 0 1 0
chr19:50482389|50482597 hsa-miR-4695-5p 0 1 0
chr19:50482389|50482597 hsa-miR-4722-5p 1 1 0
chr19:50482389|50482597 hsa-miR-3677-5p 0 1 0
chr19:50482389|50482597 hsa-miR-6890-5p 1 0 0
chr19:50482389|50482597 hsa-miR-6762-3p 0 1 0
chr19:50482389|50482597 hsa-miR-6727-5p 1 0 0
chr19:50482389|50482597 hsa-miR-3622b-5p 1 0 0
chr19:50482389|50482597 hsa-miR-3187-3p 1 0 0
chr19:50482389|50482597 hsa-miR-6721-5p 0 1 0
chr19:50482389|50482597 hsa-miR-197-5p 1 0 0
chr19:50482389|50482597 hsa-miR-3180-3p 1 0 0
chr19:50482389|50482597 hsa-miR-185-3p 0 1 0
chr19:50482389|50482597 hsa-miR-6829-5p 0 1 0
chr19:50482389|50482597 hsa-miR-6732-5p 1 0 0
chr19:50482389|50482597 hsa-miR-6798-5p 1 1 0
chr19:50482389|50482597 hsa-miR-6881-5p 1 0 0
chr19:50482389|50482597 hsa-miR-2467-3p 0 1 0
chr19:50482389|50482597 hsa-miR-6782-5p 1 0 0
chr19:50482389|50482597 hsa-miR-6821-5p 1 1 0
chr19:50482389|50482597 hsa-miR-5008-5p 1 1 0
chr19:50482389|50482597 hsa-miR-6852-5p 0 1 0
chr19:50482389|50482597 hsa-miR-7109-5p 1 0 0
chr19:50482389|50482597 hsa-miR-1229-5p 1 0 0
chr19:50482389|50482597 hsa-miR-1228-5p 1 0 0
chr19:50482389|50482597 hsa-miR-3677-3p 1 0 0
chr19:50482389|50482597 hsa-miR-6847-5p 0 1 0
chr19:50482389|50482597 hsa-miR-149-3p 1 0 0
chr19:50482389|50482597 hsa-miR-6824-5p 1 0 0
chr19:50482389|50482597 hsa-miR-5010-5p 1 1 0
chr19:50482389|50482597 hsa-miR-3189-3p 0 1 0
chr19:50482389|50482597 hsa-miR-7112-5p 1 0 0
chr19:50482389|50482597 hsa-miR-1225-5p 1 0 0
chr19:50482389|50482597 hsa-miR-6499-5p 1 1 0
chr19:50482389|50482597 hsa-miR-2277-5p 1 0 0
chr19:50482389|50482597 hsa-miR-5004-5p 0 1 0
chr19:50482389|50482597 hsa-miR-6768-3p 0 1 0
chr19:50482389|50482597 hsa-miR-4727-5p 0 1 0
chr19:50482389|50482597 hsa-miR-1233-5p 1 0 0
chr19:50482389|50482597 hsa-miR-4763-3p 1 1 0
chr19:50482389|50482597 hsa-miR-6778-5p 1 0 0
chr19:50482389|50482597 hsa-miR-6787-5p 1 1 0
chr19:50482389|50482597 hsa-miR-6812-5p 1 0 0
chr19:50482389|50482597 hsa-miR-6816-5p 1 0 0
chr19:50482389|50482597 hsa-miR-6870-5p 0 1 0
chr19:50482389|50482597 hsa-miR-6775-5p 0 1 0
chr19:50482389|50482597 hsa-miR-5001-5p 0 1 0
chr19:50482389|50482597 hsa-miR-6743-5p 1 0 0
chr19:50482389|50482597 hsa-miR-6752-5p 1 0 0
chr19:50482389|50482597 hsa-miR-6756-5p 1 1 0
chr19:50482389|50482597 hsa-miR-6803-5p 1 0 0
chr19:50482389|50482597 hsa-miR-6813-5p 0 1 0
chr19:50482389|50482597 hsa-miR-6819-5p 1 0 0
chr19:50482389|50482597 hsa-miR-7110-5p 1 1 0
chr19:50482389|50482597 hsa-miR-6722-3p 1 1 0
chr19:50482389|50482597 hsa-miR-6751-5p 1 0 0
chr19:50482389|50482597 hsa-miR-6774-5p 1 0 0
chr19:50482389|50482597 hsa-miR-6808-5p 1 0 0
chr19:50482389|50482597 hsa-miR-7111-5p 1 1 0
chr19:50482389|50482597 hsa-miR-3620-5p 1 0 0
chr19:50482389|50482597 hsa-miR-5196-5p 1 0 0
chr19:50482389|50482597 hsa-miR-6780b-5p 1 0 0
chr19:50482389|50482597 hsa-miR-10396b-5p 1 0 0
chr19:50482389|50482597 hsa-miR-1237-5p 1 0 0
chr19:50482389|50482597 hsa-miR-1909-3p 1 1 0
chr19:50482389|50482597 hsa-miR-328-5p 1 0 0
chr19:50482389|50482597 hsa-miR-4649-5p 1 0 0
chr19:50482389|50482597 hsa-miR-4745-5p 1 0 0
chr19:50482389|50482597 hsa-miR-6735-5p 0 1 0
chr19:50482389|50482597 hsa-miR-6794-5p 1 1 0
chr19:50482389|50482597 hsa-miR-6795-5p 1 1 0
chr19:50482389|50482597 hsa-miR-6846-5p 1 1 0
chr19:50482389|50482597 hsa-miR-6848-5p 1 1 0
chr19:50482389|50482597 hsa-miR-4723-5p 0 1 0
chr19:50482389|50482597 hsa-miR-6831-5p 0 1 0
chr19:50482389|50482597 hsa-miR-939-5p 1 0 0
chr19:50482389|50482597 hsa-miR-4758-5p 1 0 0
chr19:50482389|50482597 hsa-miR-6511a-5p 0 1 0
chr19:50482389|50482597 hsa-miR-3085-5p 1 0 0
chr19:50482389|50482597 hsa-miR-4665-5p 0 1 0
chr19:50482389|50482597 hsa-miR-6855-5p 1 0 0
chr19:50482389|50482597 hsa-miR-6724-5p 1 0 0
chr19:50482389|50482597 hsa-miR-6791-5p 1 1 0
chr19:50482389|50482597 hsa-miR-6762-5p 1 1 0
chr19:50482389|50482597 hsa-miR-6805-3p 1 0 0
chr19:50482389|50482597 hsa-miR-10400-3p 1 1 0
chr19:50482389|50482597 hsa-miR-4756-5p 1 0 0
chr19:50482389|50482597 hsa-miR-5588-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:50482389|50482597
ORF Type ORF1
Protein Length 47
Nucleotide Length 144
Protein Sequence LGQPLVLCLLLAEEQLDWGLWHSSRCLLRPPPPWPHAAPGASPLPME
Nucleotide Sequence CTGGGCCAGCCCCTTGTCCTCTGCCTTCTGCTGGCAGAGGAGCAGCTGGACTGGGGCCTTTGGCACAGCAGCCGGTGTCTCCTGCGCCCGCCTCCCCCATGGCCCCATGCAGCCCCAGGGGCTTCCCCCCTGCCCATGGAGTAG
CircID chr19:50482389|50482597
ORF Type ORF2
Protein Length 65
Nucleotide Length 195
Protein Sequence MSSAFCWQRSSWTGAFGTAAGVSCARLPHGPMQPQGLPPCPWSRARDPGHYASSDLASPYPEPMQ
Nucleotide Sequence TTGTCCTCTGCCTTCTGCTGGCAGAGGAGCAGCTGGACTGGGGCCTTTGGCACAGCAGCCGGTGTCTCCTGCGCCCGCCTCCCCCATGGCCCCATGCAGCCCCAGGGGCTTCCCCCCTGCCCATGGAGTAGAGCCCGAGATCCTGGCCACTATGCCAGTTCTGACCTCGCATCCCCCTACCCCGAGCCCATGCAG
CircID chr19:50482389|50482597
ORF Type ORF3
Protein Length 63
Nucleotide Length 189
Protein Sequence MPSAGRGAAGLGPLAQQPVSPAPASPMAPCSPRGFPPAHGVEPEILATMPVLTSHPPTPSPCS
Nucleotide Sequence CTGCCTTCTGCTGGCAGAGGAGCAGCTGGACTGGGGCCTTTGGCACAGCAGCCGGTGTCTCCTGCGCCCGCCTCCCCCATGGCCCCATGCAGCCCCAGGGGCTTCCCCCCTGCCCATGGAGTAGAGCCCGAGATCCTGGCCACTATGCCAGTTCTGACCTCGCATCCCCCTACCCCGAGCCCATGCAGT
CircID chr19:50482389|50482597
ORF Type ORF4
Protein Length 61
Nucleotide Length 183
Protein Sequence MRGQNWHSGQDLGLYSMGRGEAPGAAWGHGGGGRRRHRLLCQRPQSSCSSASRRQRTRGWP
Nucleotide Sequence ATGCGAGGTCAGAACTGGCATAGTGGCCAGGATCTCGGGCTCTACTCCATGGGCAGGGGGGAAGCCCCTGGGGCTGCATGGGGCCATGGGGGAGGCGGGCGCAGGAGACACCGGCTGCTGTGCCAAAGGCCCCAGTCCAGCTGCTCCTCTGCCAGCAGAAGGCAGAGGACAAGGGGCTGGCCC
CircID chr19:50482389|50482597
ORF Type ORF5
Protein Length 69
Nucleotide Length 207
Protein Sequence LHGLGVGGCEVRTGIVARISGSTPWAGGKPLGLHGAMGEAGAGDTGCCAKGPSPAAPLPAEGRGQGAGP
Nucleotide Sequence CTGCATGGGCTCGGGGTAGGGGGATGCGAGGTCAGAACTGGCATAGTGGCCAGGATCTCGGGCTCTACTCCATGGGCAGGGGGGAAGCCCCTGGGGCTGCATGGGGCCATGGGGGAGGCGGGCGCAGGAGACACCGGCTGCTGTGCCAAAGGCCCCAGTCCAGCTGCTCCTCTGCCAGCAGAAGGCAGAGGACAAGGGGCTGGCCCA
CircID chr19:50482389|50482597
ORF Type ORF6
Protein Length 36
Nucleotide Length 108
Protein Sequence MGPWGRRAQETPAAVPKAPVQLLLCQQKAEDKGLAQ
Nucleotide Sequence ATGGGGCCATGGGGGAGGCGGGCGCAGGAGACACCGGCTGCTGTGCCAAAGGCCCCAGTCCAGCTGCTCCTCTGCCAGCAGAAGGCAGAGGACAAGGGGCTGGCCCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab