CircRNA Information

General Information
circRNA Basic Information
CircID chr19:50506545|50507688
Strand -
CircType exon
Host Gene ENSG00000161677.10;
Algorism CIRI2;
Sequence CTGGGGCAGGGCCAGCTGGGACAGGGGCCTCCTCCTGTCCCACCACACGGCGGCCAGGCCCAGCCCCTGCAGAGCGGCCATGATCACATTGACATCATAGTTGCCGGTGCCCAGGAGGCTGCGATGAGGGTTCAGCCGGGAGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:50506545|50507688 hsa-miR-328-5p 0 0 1
chr19:50506545|50507688 hsa-miR-328-3p 0 0 1
chr19:50506545|50507688 hsa-miR-612 0 1 1
chr19:50506545|50507688 hsa-miR-765 0 0 1
chr19:50506545|50507688 hsa-miR-541-5p 0 0 1
chr19:50506545|50507688 hsa-miR-541-3p 0 0 1
chr19:50506545|50507688 hsa-miR-1205 0 1 1
chr19:50506545|50507688 hsa-miR-1291 0 0 1
chr19:50506545|50507688 hsa-miR-1272 0 0 1
chr19:50506545|50507688 hsa-miR-1322 0 0 1
chr19:50506545|50507688 hsa-miR-339-5p 0 1 1
chr19:50506545|50507688 hsa-miR-1184 0 0 1
chr19:50506545|50507688 hsa-miR-654-5p 0 0 1
chr19:50506545|50507688 hsa-miR-1207-3p 0 1 1
chr19:50506545|50507688 hsa-miR-324-3p 0 0 1
chr19:50506545|50507688 hsa-miR-1302 0 0 1
chr19:50506545|50507688 hsa-miR-1285 0 0 1
chr19:50506545|50507688 hsa-miR-635 1 1 0
chr19:50506545|50507688 hsa-miR-637 1 0 0
chr19:50506545|50507688 hsa-miR-762 1 1 0
chr19:50506545|50507688 hsa-miR-2861 0 1 0
chr19:50506545|50507688 hsa-miR-3122 0 1 0
chr19:50506545|50507688 hsa-miR-4298 1 1 0
chr19:50506545|50507688 hsa-miR-4492 0 1 0
chr19:50506545|50507688 hsa-miR-4505 0 1 0
chr19:50506545|50507688 hsa-miR-1587 0 1 0
chr19:50506545|50507688 hsa-miR-3960 1 0 0
chr19:50506545|50507688 hsa-miR-4767 1 0 0
chr19:50506545|50507688 hsa-miR-6072 0 1 0
chr19:50506545|50507688 hsa-miR-6085 0 1 0
chr19:50506545|50507688 hsa-miR-6860 1 1 0
chr19:50506545|50507688 hsa-miR-8066 0 1 0
chr19:50506545|50507688 hsa-miR-9899 1 0 0
chr19:50506545|50507688 hsa-miR-210-5p 0 1 0
chr19:50506545|50507688 hsa-miR-3064-5p 0 1 0
chr19:50506545|50507688 hsa-miR-593-5p 1 0 0
chr19:50506545|50507688 hsa-miR-185-3p 0 1 0
chr19:50506545|50507688 hsa-miR-5008-5p 0 1 0
chr19:50506545|50507688 hsa-miR-1343-3p 0 1 0
chr19:50506545|50507688 hsa-miR-6786-5p 0 1 0
chr19:50506545|50507688 hsa-miR-939-3p 1 1 0
chr19:50506545|50507688 hsa-miR-296-3p 1 0 0
chr19:50506545|50507688 hsa-miR-3677-3p 1 0 0
chr19:50506545|50507688 hsa-miR-4638-3p 1 0 0
chr19:50506545|50507688 hsa-miR-7156-3p 1 1 0
chr19:50506545|50507688 hsa-miR-1225-5p 1 0 0
chr19:50506545|50507688 hsa-miR-660-3p 0 1 0
chr19:50506545|50507688 hsa-miR-6752-3p 0 1 0
chr19:50506545|50507688 hsa-miR-6748-3p 0 1 0
chr19:50506545|50507688 hsa-miR-10400-5p 1 0 0
chr19:50506545|50507688 hsa-miR-4763-3p 1 1 0
chr19:50506545|50507688 hsa-miR-6787-5p 1 0 0
chr19:50506545|50507688 hsa-miR-6816-5p 1 0 0
chr19:50506545|50507688 hsa-miR-5001-5p 0 1 0
chr19:50506545|50507688 hsa-miR-6743-5p 1 0 0
chr19:50506545|50507688 hsa-miR-6756-5p 1 1 0
chr19:50506545|50507688 hsa-miR-6769a-5p 1 0 0
chr19:50506545|50507688 hsa-miR-6813-5p 0 1 0
chr19:50506545|50507688 hsa-miR-6722-3p 1 1 0
chr19:50506545|50507688 hsa-miR-3620-5p 1 1 0
chr19:50506545|50507688 hsa-miR-5189-5p 1 1 0
chr19:50506545|50507688 hsa-miR-1909-3p 1 1 0
chr19:50506545|50507688 hsa-miR-6795-5p 1 0 0
chr19:50506545|50507688 hsa-miR-6848-5p 1 1 0
chr19:50506545|50507688 hsa-miR-3187-5p 1 1 0
chr19:50506545|50507688 hsa-miR-6791-3p 1 1 0
chr19:50506545|50507688 hsa-miR-6775-3p 0 1 0
chr19:50506545|50507688 hsa-miR-9851-3p 1 0 0
chr19:50506545|50507688 hsa-miR-6891-3p 0 1 0
chr19:50506545|50507688 hsa-miR-6783-3p 0 1 0
chr19:50506545|50507688 hsa-miR-10394-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:50506545|50507688
ORF Type ORF1
Protein Length 47
Nucleotide Length 141
Protein Sequence LGQGQLGQGPPPVPPHGGQAQPLQSGHDHIDIIVAGAQEAAMRVQPG
Nucleotide Sequence CTGGGGCAGGGCCAGCTGGGACAGGGGCCTCCTCCTGTCCCACCACACGGCGGCCAGGCCCAGCCCCTGCAGAGCGGCCATGATCACATTGACATCATAGTTGCCGGTGCCCAGGAGGCTGCGATGAGGGTTCAGCCGGGA
CircID chr19:50506545|50507688
ORF Type ORF2
Protein Length 45
Nucleotide Length 135
Protein Sequence MNPHRSLLGTGNYDVNVIMAALQGLGLAAVWWDRRRPLSQLALPQ
Nucleotide Sequence CTGAACCCTCATCGCAGCCTCCTGGGCACCGGCAACTATGATGTCAATGTGATCATGGCCGCTCTGCAGGGGCTGGGCCTGGCCGCCGTGTGGTGGGACAGGAGGAGGCCCCTGTCCCAGCTGGCCCTGCCCCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab