CircRNA Information

General Information
circRNA Basic Information
CircID chr19:50798137|50798302
Strand -
CircType exon
Host Gene ENSG00000167747.12;
Algorism CIRI2;
Sequence CCCTGGAGCACCAGGCCAGGCGGTGTCTGTCCTTGAGAGCCAGGCCCAGGTCTCACGGTGGCGTATGGACAGCTCCTCCCCATAGGCCTGGTCACAATAGGGAAGCGGGGGTGGCTCCTCCCCTAGCCTGCAGGAAGCCCTTGGTAGCCCACTTATCCACCTTCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:50798137|50798302 hsa-miR-149-5p 0 0 1
chr19:50798137|50798302 hsa-miR-149-3p 0 0 1
chr19:50798137|50798302 hsa-miR-631 0 1 1
chr19:50798137|50798302 hsa-miR-758-5p 0 0 1
chr19:50798137|50798302 hsa-miR-758-3p 0 0 1
chr19:50798137|50798302 hsa-miR-765 0 0 1
chr19:50798137|50798302 hsa-miR-708-5p 0 0 1
chr19:50798137|50798302 hsa-miR-708-3p 0 0 1
chr19:50798137|50798302 hsa-miR-760 0 0 1
chr19:50798137|50798302 hsa-miR-939-5p 0 0 1
chr19:50798137|50798302 hsa-miR-939-3p 0 0 1
chr19:50798137|50798302 hsa-miR-1205 0 0 1
chr19:50798137|50798302 hsa-miR-1261 0 0 1
chr19:50798137|50798302 hsa-miR-513c-5p 0 0 1
chr19:50798137|50798302 hsa-miR-513c-3p 0 0 1
chr19:50798137|50798302 hsa-miR-769-5p 0 1 1
chr19:50798137|50798302 hsa-miR-28-5p 0 0 1
chr19:50798137|50798302 hsa-miR-516a-3p 0 0 1
chr19:50798137|50798302 hsa-miR-612 1 0 0
chr19:50798137|50798302 hsa-miR-661 1 0 0
chr19:50798137|50798302 hsa-miR-940 1 0 0
chr19:50798137|50798302 hsa-miR-1183 1 0 0
chr19:50798137|50798302 hsa-miR-1295a 1 0 0
chr19:50798137|50798302 hsa-miR-2861 1 1 0
chr19:50798137|50798302 hsa-miR-3139 0 1 0
chr19:50798137|50798302 hsa-miR-3176 0 1 0
chr19:50798137|50798302 hsa-miR-3661 0 1 0
chr19:50798137|50798302 hsa-miR-3907 0 1 0
chr19:50798137|50798302 hsa-miR-4498 1 0 0
chr19:50798137|50798302 hsa-miR-4512 1 0 0
chr19:50798137|50798302 hsa-miR-1587 1 0 0
chr19:50798137|50798302 hsa-miR-4706 1 0 0
chr19:50798137|50798302 hsa-miR-4734 1 0 0
chr19:50798137|50798302 hsa-miR-4739 1 0 0
chr19:50798137|50798302 hsa-miR-4741 1 0 0
chr19:50798137|50798302 hsa-miR-6069 1 1 0
chr19:50798137|50798302 hsa-miR-6085 1 0 0
chr19:50798137|50798302 hsa-miR-6133 1 0 0
chr19:50798137|50798302 hsa-miR-12114 1 1 0
chr19:50798137|50798302 hsa-miR-7106-5p 0 1 0
chr19:50798137|50798302 hsa-miR-6825-5p 0 1 0
chr19:50798137|50798302 hsa-miR-6894-5p 1 0 0
chr19:50798137|50798302 hsa-miR-8071 1 0 0
chr19:50798137|50798302 hsa-miR-6089 1 0 0
chr19:50798137|50798302 hsa-miR-6880-5p 1 0 0
chr19:50798137|50798302 hsa-miR-6730-5p 1 0 0
chr19:50798137|50798302 hsa-miR-4755-3p 0 1 0
chr19:50798137|50798302 hsa-miR-3180-3p 1 0 0
chr19:50798137|50798302 hsa-miR-6793-5p 1 0 0
chr19:50798137|50798302 hsa-miR-185-3p 1 0 0
chr19:50798137|50798302 hsa-miR-6829-5p 1 0 0
chr19:50798137|50798302 hsa-miR-942-5p 0 1 0
chr19:50798137|50798302 hsa-miR-5088-5p 1 0 0
chr19:50798137|50798302 hsa-miR-6771-5p 1 0 0
chr19:50798137|50798302 hsa-miR-6749-5p 0 1 0
chr19:50798137|50798302 hsa-miR-6824-5p 0 1 0
chr19:50798137|50798302 hsa-miR-3158-3p 1 1 0
chr19:50798137|50798302 hsa-miR-1911-3p 0 1 0
chr19:50798137|50798302 hsa-miR-6814-5p 1 0 0
chr19:50798137|50798302 hsa-miR-1295b-3p 1 0 0
chr19:50798137|50798302 hsa-miR-6865-3p 0 1 0
chr19:50798137|50798302 hsa-miR-516a-5p 0 1 0
chr19:50798137|50798302 hsa-miR-4763-3p 1 0 0
chr19:50798137|50798302 hsa-miR-6865-5p 1 0 0
chr19:50798137|50798302 hsa-miR-1343-5p 1 1 0
chr19:50798137|50798302 hsa-miR-6756-5p 1 0 0
chr19:50798137|50798302 hsa-miR-6769a-5p 1 0 0
chr19:50798137|50798302 hsa-miR-6815-5p 1 0 0
chr19:50798137|50798302 hsa-miR-6851-5p 1 0 0
chr19:50798137|50798302 hsa-miR-11181-3p 0 1 0
chr19:50798137|50798302 hsa-miR-6763-5p 0 1 0
chr19:50798137|50798302 hsa-miR-6779-5p 1 0 0
chr19:50798137|50798302 hsa-miR-7111-5p 1 0 0
chr19:50798137|50798302 hsa-miR-3620-5p 1 0 0
chr19:50798137|50798302 hsa-miR-4758-5p 1 0 0
chr19:50798137|50798302 hsa-miR-6511b-5p 0 1 0
chr19:50798137|50798302 hsa-miR-6810-3p 0 1 0
chr19:50798137|50798302 hsa-miR-6715b-5p 0 1 0
chr19:50798137|50798302 hsa-miR-514b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:50798137|50798302
ORF Type ORF1
Protein Length 54
Nucleotide Length 162
Protein Sequence LEHQARRCLSLRARPRSHGGVWTAPPHRPGHNREAGVAPPLACRKPLVAHLSTF
Nucleotide Sequence CTGGAGCACCAGGCCAGGCGGTGTCTGTCCTTGAGAGCCAGGCCCAGGTCTCACGGTGGCGTATGGACAGCTCCTCCCCATAGGCCTGGTCACAATAGGGAAGCGGGGGTGGCTCCTCCCCTAGCCTGCAGGAAGCCCTTGGTAGCCCACTTATCCACCTTC
CircID chr19:50798137|50798302
ORF Type ORF2
Protein Length 27
Nucleotide Length 81
Protein Sequence MGRSCPYATVRPGPGSQGQTPPGLVLQ
Nucleotide Sequence ATGGGGAGGAGCTGTCCATACGCCACCGTGAGACCTGGGCCTGGCTCTCAAGGACAGACACCGCCTGGCCTGGTGCTCCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab