CircRNA Information

General Information
circRNA Basic Information
CircID chr19:514249|514411
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTACCGTGTACTGGCCCTGCATTCACTGAGCACCTACTCTACACCGGCCCTGTATTACTGAGCACCCACTGCACACCGACCCCACGTTTACTAAGCACCTATTGCTTACTGGCCCAGCATTTACTGAGCACCCACTGCACACCGCCCCAGCATTACTGAGTAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:514249|514411 hsa-miR-155-5p 0 0 1
chr19:514249|514411 hsa-miR-155-3p 0 0 1
chr19:514249|514411 hsa-miR-510-5p 0 0 1
chr19:514249|514411 hsa-miR-510-3p 0 0 1
chr19:514249|514411 hsa-miR-602 0 0 1
chr19:514249|514411 hsa-miR-655-5p 0 0 1
chr19:514249|514411 hsa-miR-655-3p 0 0 1
chr19:514249|514411 hsa-miR-1257 0 1 1
chr19:514249|514411 hsa-miR-512-5p 0 0 1
chr19:514249|514411 hsa-miR-770-5p 0 0 1
chr19:514249|514411 hsa-miR-615-5p 1 0 1
chr19:514249|514411 hsa-miR-886-5p 0 0 1
chr19:514249|514411 hsa-miR-608 1 0 0
chr19:514249|514411 hsa-miR-658 1 0 0
chr19:514249|514411 hsa-miR-762 1 0 0
chr19:514249|514411 hsa-miR-3132 1 1 0
chr19:514249|514411 hsa-miR-3141 1 0 0
chr19:514249|514411 hsa-miR-3147 1 1 0
chr19:514249|514411 hsa-miR-3196 1 0 0
chr19:514249|514411 hsa-miR-4322 1 0 0
chr19:514249|514411 hsa-miR-3665 1 0 0
chr19:514249|514411 hsa-miR-3907 1 1 0
chr19:514249|514411 hsa-miR-3918 1 1 0
chr19:514249|514411 hsa-miR-4440 1 0 0
chr19:514249|514411 hsa-miR-3135b 1 1 0
chr19:514249|514411 hsa-miR-4463 1 0 0
chr19:514249|514411 hsa-miR-4498 1 0 0
chr19:514249|514411 hsa-miR-4507 1 0 0
chr19:514249|514411 hsa-miR-1587 1 0 0
chr19:514249|514411 hsa-miR-4651 1 0 0
chr19:514249|514411 hsa-miR-5090 1 0 0
chr19:514249|514411 hsa-miR-5572 1 0 0
chr19:514249|514411 hsa-miR-5787 1 0 0
chr19:514249|514411 hsa-miR-6132 1 0 0
chr19:514249|514411 hsa-miR-7704 1 0 0
chr19:514249|514411 hsa-miR-8072 1 0 0
chr19:514249|514411 hsa-miR-8089 1 0 0
chr19:514249|514411 hsa-miR-138-5p 1 0 0
chr19:514249|514411 hsa-miR-143-5p 1 1 0
chr19:514249|514411 hsa-miR-504-3p 1 0 0
chr19:514249|514411 hsa-miR-7155-5p 1 0 0
chr19:514249|514411 hsa-miR-4433a-3p 1 0 0
chr19:514249|514411 hsa-miR-6765-5p 1 0 0
chr19:514249|514411 hsa-miR-6825-5p 1 0 0
chr19:514249|514411 hsa-miR-6799-5p 1 0 0
chr19:514249|514411 hsa-miR-1227-5p 1 0 0
chr19:514249|514411 hsa-miR-7114-5p 1 0 0
chr19:514249|514411 hsa-miR-6089 1 0 0
chr19:514249|514411 hsa-miR-4709-3p 0 1 0
chr19:514249|514411 hsa-miR-24-3p 1 0 0
chr19:514249|514411 hsa-miR-6741-5p 1 1 0
chr19:514249|514411 hsa-miR-6759-5p 1 1 0
chr19:514249|514411 hsa-miR-197-5p 1 0 0
chr19:514249|514411 hsa-miR-5589-5p 1 0 0
chr19:514249|514411 hsa-miR-6776-5p 1 0 0
chr19:514249|514411 hsa-miR-6742-5p 1 0 0
chr19:514249|514411 hsa-miR-3151-5p 1 0 0
chr19:514249|514411 hsa-miR-3180-3p 1 0 0
chr19:514249|514411 hsa-miR-6748-5p 0 1 0
chr19:514249|514411 hsa-miR-6772-5p 1 0 0
chr19:514249|514411 hsa-miR-6793-5p 1 0 0
chr19:514249|514411 hsa-miR-6796-5p 1 1 0
chr19:514249|514411 hsa-miR-6829-5p 1 0 0
chr19:514249|514411 hsa-miR-6732-5p 1 0 0
chr19:514249|514411 hsa-miR-6782-5p 1 0 0
chr19:514249|514411 hsa-miR-3934-3p 1 0 0
chr19:514249|514411 hsa-miR-6786-5p 1 0 0
chr19:514249|514411 hsa-miR-1229-5p 1 0 0
chr19:514249|514411 hsa-miR-4640-5p 1 1 0
chr19:514249|514411 hsa-miR-296-3p 1 0 0
chr19:514249|514411 hsa-miR-4732-5p 1 0 0
chr19:514249|514411 hsa-miR-4743-5p 1 0 0
chr19:514249|514411 hsa-miR-4787-5p 1 0 0
chr19:514249|514411 hsa-miR-4446-3p 1 0 0
chr19:514249|514411 hsa-miR-6824-5p 1 0 0
chr19:514249|514411 hsa-miR-6789-5p 1 0 0
chr19:514249|514411 hsa-miR-6800-5p 1 0 0
chr19:514249|514411 hsa-miR-6781-5p 1 0 0
chr19:514249|514411 hsa-miR-6877-5p 1 0 0
chr19:514249|514411 hsa-miR-194-3p 0 1 0
chr19:514249|514411 hsa-miR-574-5p 1 0 0
chr19:514249|514411 hsa-miR-6895-5p 0 1 0
chr19:514249|514411 hsa-miR-6869-5p 1 0 0
chr19:514249|514411 hsa-miR-6832-5p 1 0 0
chr19:514249|514411 hsa-miR-4746-3p 1 0 0
chr19:514249|514411 hsa-miR-6769b-5p 1 0 0
chr19:514249|514411 hsa-miR-6812-5p 1 0 0
chr19:514249|514411 hsa-miR-6816-5p 1 0 0
chr19:514249|514411 hsa-miR-5001-5p 1 0 0
chr19:514249|514411 hsa-miR-6737-5p 1 0 0
chr19:514249|514411 hsa-miR-6752-5p 1 0 0
chr19:514249|514411 hsa-miR-6756-5p 1 0 0
chr19:514249|514411 hsa-miR-6803-5p 1 0 0
chr19:514249|514411 hsa-miR-6819-5p 1 0 0
chr19:514249|514411 hsa-miR-6751-5p 1 0 0
chr19:514249|514411 hsa-miR-6808-5p 1 0 0
chr19:514249|514411 hsa-miR-6879-5p 1 0 0
chr19:514249|514411 hsa-miR-3620-5p 1 0 0
chr19:514249|514411 hsa-miR-6836-5p 1 1 0
chr19:514249|514411 hsa-miR-1237-5p 1 0 0
chr19:514249|514411 hsa-miR-1909-3p 1 0 0
chr19:514249|514411 hsa-miR-4701-3p 1 0 0
chr19:514249|514411 hsa-miR-4726-5p 1 1 0
chr19:514249|514411 hsa-miR-4745-5p 1 0 0
chr19:514249|514411 hsa-miR-675-5p 1 0 0
chr19:514249|514411 hsa-miR-1238-5p 1 0 0
chr19:514249|514411 hsa-miR-4758-5p 1 0 0
chr19:514249|514411 hsa-miR-3940-5p 1 0 0
chr19:514249|514411 hsa-miR-1914-3p 1 0 0
chr19:514249|514411 hsa-miR-6736-5p 1 0 0
chr19:514249|514411 hsa-miR-6855-5p 1 1 0
chr19:514249|514411 hsa-miR-7151-3p 1 0 0
chr19:514249|514411 hsa-miR-6724-5p 1 0 0
chr19:514249|514411 hsa-miR-6837-5p 1 0 0
chr19:514249|514411 hsa-miR-545-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:514249|514411
ORF Type ORF1
Protein Length 33
Nucleotide Length 102
Protein Sequence MSTHCTPTPRLLSTYCLLAQHLLSTHCTPPQHY
Nucleotide Sequence CTGAGCACCCACTGCACACCGACCCCACGTTTACTAAGCACCTATTGCTTACTGGCCCAGCATTTACTGAGCACCCACTGCACACCGCCCCAGCATTACTGA
CircID chr19:514249|514411
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MHTDPTFTKHLLLTGPAFTEHPLHTAPALLS
Nucleotide Sequence CTGCACACCGACCCCACGTTTACTAAGCACCTATTGCTTACTGGCCCAGCATTTACTGAGCACCCACTGCACACCGCCCCAGCATTACTGAGT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab