CircRNA Information

General Information
circRNA Basic Information
CircID chr19:52215814|52216058
Strand -
CircType exon
Host Gene ENSG00000105568.16;
Algorism CIRI2;
Sequence AGACCTGGTCCCTGCCTTCCAGAACCTGATGAAAGACTGTGAGGCCGAGGTGAGGGCCGCAGCCTCCCACAAGGTCAAAGGTTGGTGCTGGCAGCCGGAACACAGCAAGTGGGGTGGGTATCCAAGGGGCTGGAGGTGGAACTAGCACATCAGGTCTCACTTCCCTTTGCCTCCCTCTCCCTGCCCACAGAGTTCTGTGAAAACCTCTCAGCTGACTGTCGGGAGAATGTGATCATGTCCCAGAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:52215814|52216058 hsa-miR-23a-5p 0 0 1
chr19:52215814|52216058 hsa-miR-23a-3p 0 0 1
chr19:52215814|52216058 hsa-miR-27a-5p 0 0 1
chr19:52215814|52216058 hsa-miR-27a-3p 0 0 1
chr19:52215814|52216058 hsa-miR-29a-5p 0 0 1
chr19:52215814|52216058 hsa-miR-29a-3p 0 0 1
chr19:52215814|52216058 hsa-miR-192-5p 0 0 1
chr19:52215814|52216058 hsa-miR-192-3p 0 0 1
chr19:52215814|52216058 hsa-miR-215-5p 0 0 1
chr19:52215814|52216058 hsa-miR-215-3p 0 0 1
chr19:52215814|52216058 hsa-miR-23b-5p 0 0 1
chr19:52215814|52216058 hsa-miR-23b-3p 0 0 1
chr19:52215814|52216058 hsa-miR-27b-5p 0 0 1
chr19:52215814|52216058 hsa-miR-27b-3p 0 0 1
chr19:52215814|52216058 hsa-miR-29c-5p 0 0 1
chr19:52215814|52216058 hsa-miR-29c-3p 0 0 1
chr19:52215814|52216058 hsa-miR-604 0 1 1
chr19:52215814|52216058 hsa-miR-650 0 0 1
chr19:52215814|52216058 hsa-miR-766-5p 0 0 1
chr19:52215814|52216058 hsa-miR-766-3p 0 0 1
chr19:52215814|52216058 hsa-miR-940 0 1 1
chr19:52215814|52216058 hsa-miR-1180-5p 0 0 1
chr19:52215814|52216058 hsa-miR-1180-3p 0 0 1
chr19:52215814|52216058 hsa-miR-1234-3p 0 0 1
chr19:52215814|52216058 hsa-miR-1202 0 0 1
chr19:52215814|52216058 hsa-miR-1299 0 0 1
chr19:52215814|52216058 hsa-miR-1261 0 0 1
chr19:52215814|52216058 hsa-miR-1321 0 0 1
chr19:52215814|52216058 hsa-miR-1234 0 0 1
chr19:52215814|52216058 hsa-miR-769-5p 0 0 1
chr19:52215814|52216058 hsa-miR-485-5p 0 0 1
chr19:52215814|52216058 hsa-miR-1207-3p 0 0 1
chr19:52215814|52216058 hsa-miR-513a-5p 0 0 1
chr19:52215814|52216058 hsa-miR-875-3p 0 0 1
chr19:52215814|52216058 hsa-miR-1207-5p 1 1 1
chr19:52215814|52216058 hsa-miR-1302 0 0 1
chr19:52215814|52216058 hsa-miR-128 0 0 1
chr19:52215814|52216058 hsa-miR-516b 0 0 1
chr19:52215814|52216058 hsa-miR-29b 0 0 1
chr19:52215814|52216058 hsa-miR-658 0 1 0
chr19:52215814|52216058 hsa-miR-4314 0 1 0
chr19:52215814|52216058 hsa-miR-4270 0 1 0
chr19:52215814|52216058 hsa-miR-3972 0 1 0
chr19:52215814|52216058 hsa-miR-4656 1 0 0
chr19:52215814|52216058 hsa-miR-4739 1 1 0
chr19:52215814|52216058 hsa-miR-6127 0 1 0
chr19:52215814|52216058 hsa-miR-7974 0 1 0
chr19:52215814|52216058 hsa-miR-9500 0 1 0
chr19:52215814|52216058 hsa-miR-4665-3p 1 0 0
chr19:52215814|52216058 hsa-miR-6720-5p 0 1 0
chr19:52215814|52216058 hsa-miR-210-5p 1 0 0
chr19:52215814|52216058 hsa-miR-3192-5p 0 1 0
chr19:52215814|52216058 hsa-miR-6873-5p 0 1 0
chr19:52215814|52216058 hsa-miR-6762-3p 1 0 0
chr19:52215814|52216058 hsa-miR-3190-3p 0 1 0
chr19:52215814|52216058 hsa-miR-6760-5p 0 1 0
chr19:52215814|52216058 hsa-miR-3194-5p 1 0 0
chr19:52215814|52216058 hsa-miR-30b-3p 0 1 0
chr19:52215814|52216058 hsa-miR-1229-5p 1 0 0
chr19:52215814|52216058 hsa-miR-1908-3p 1 0 0
chr19:52215814|52216058 hsa-miR-6771-5p 1 0 0
chr19:52215814|52216058 hsa-miR-6501-5p 1 1 0
chr19:52215814|52216058 hsa-miR-3065-3p 0 1 0
chr19:52215814|52216058 hsa-miR-629-3p 0 1 0
chr19:52215814|52216058 hsa-miR-6871-3p 1 0 0
chr19:52215814|52216058 hsa-miR-4749-3p 1 0 0
chr19:52215814|52216058 hsa-miR-4649-3p 1 0 0
chr19:52215814|52216058 hsa-miR-449c-3p 0 1 0
chr19:52215814|52216058 hsa-miR-329-5p 0 1 0
chr19:52215814|52216058 hsa-miR-29b-3p 0 1 0
chr19:52215814|52216058 hsa-miR-338-3p 0 1 0
chr19:52215814|52216058 hsa-miR-1233-5p 1 1 0
chr19:52215814|52216058 hsa-miR-4763-3p 0 1 0
chr19:52215814|52216058 hsa-miR-6778-5p 1 0 0
chr19:52215814|52216058 hsa-miR-6893-5p 0 1 0
chr19:52215814|52216058 hsa-miR-6775-5p 0 1 0
chr19:52215814|52216058 hsa-miR-1249-5p 0 1 0
chr19:52215814|52216058 hsa-miR-6722-3p 0 1 0
chr19:52215814|52216058 hsa-miR-6808-5p 0 1 0
chr19:52215814|52216058 hsa-miR-6879-5p 0 1 0
chr19:52215814|52216058 hsa-miR-4728-5p 0 1 0
chr19:52215814|52216058 hsa-miR-1909-3p 0 1 0
chr19:52215814|52216058 hsa-miR-6731-5p 0 1 0
chr19:52215814|52216058 hsa-miR-4747-5p 1 0 0
chr19:52215814|52216058 hsa-miR-4722-3p 1 1 0
chr19:52215814|52216058 hsa-miR-6893-3p 1 0 0
chr19:52215814|52216058 hsa-miR-10392-3p 1 1 0
chr19:52215814|52216058 hsa-miR-6512-3p 0 1 0
chr19:52215814|52216058 hsa-miR-6819-3p 1 1 0
chr19:52215814|52216058 hsa-miR-7114-3p 1 0 0
chr19:52215814|52216058 hsa-miR-3085-3p 1 0 0
chr19:52215814|52216058 hsa-miR-487a-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:52215814|52216058
ORF Type ORF1
Protein Length 54
Nucleotide Length 162
Protein Sequence MVLAAGTQQVGWVSKGLEVELAHQVSLPFASLSLPTEFCENLSADCRENVIMSQ
Nucleotide Sequence TTGGTGCTGGCAGCCGGAACACAGCAAGTGGGGTGGGTATCCAAGGGGCTGGAGGTGGAACTAGCACATCAGGTCTCACTTCCCTTTGCCTCCCTCTCCCTGCCCACAGAGTTCTGTGAAAACCTCTCAGCTGACTGTCGGGAGAATGTGATCATGTCCCAG
CircID chr19:52215814|52216058
ORF Type ORF2
Protein Length 46
Nucleotide Length 141
Protein Sequence MVPAFQNLMKDCEAEVRAAASHKVKGWCWQPEHSKWGGYPRGWRWN
Nucleotide Sequence CTGGTCCCTGCCTTCCAGAACCTGATGAAAGACTGTGAGGCCGAGGTGAGGGCCGCAGCCTCCCACAAGGTCAAAGGTTGGTGCTGGCAGCCGGAACACAGCAAGTGGGGTGGGTATCCAAGGGGCTGGAGGTGGAACTAG
CircID chr19:52215814|52216058
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence MITFSRQSAERFSQNSVGREREAKGSET
Nucleotide Sequence ATGATCACATTCTCCCGACAGTCAGCTGAGAGGTTTTCACAGAACTCTGTGGGCAGGGAGAGGGAGGCAAAGGGAAGTGAGACCTGA
CircID chr19:52215814|52216058
ORF Type ORF4
Protein Length 70
Nucleotide Length 210
Protein Sequence MRGFHRTLWAGRGRQREVRPDVLVPPPAPWIPTPLAVFRLPAPTFDLVGGCGPHLGLTVFHQVLEGRDQV
Nucleotide Sequence CTGAGAGGTTTTCACAGAACTCTGTGGGCAGGGAGAGGGAGGCAAAGGGAAGTGAGACCTGATGTGCTAGTTCCACCTCCAGCCCCTTGGATACCCACCCCACTTGCTGTGTTCCGGCTGCCAGCACCAACCTTTGACCTTGTGGGAGGCTGCGGCCCTCACCTCGGCCTCACAGTCTTTCATCAGGTTCTGGAAGGCAGGGACCAGGTC
CircID chr19:52215814|52216058
ORF Type ORF5
Protein Length 36
Nucleotide Length 108
Protein Sequence MLCSGCQHQPLTLWEAAALTSASQSFIRFWKAGTRS
Nucleotide Sequence TTGCTGTGTTCCGGCTGCCAGCACCAACCTTTGACCTTGTGGGAGGCTGCGGCCCTCACCTCGGCCTCACAGTCTTTCATCAGGTTCTGGAAGGCAGGGACCAGGTCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab