CircRNA Information

General Information
circRNA Basic Information
CircID chr19:53224305|53224551
Strand +
CircType exon
Host Gene ENSG00000267809.1;
Algorism CIRI2;
Sequence CAGAAAACTATAAGAGGATAGAGGCAATTGTAAAAAACTATCCAGAAGGCCATAAAGCAGCAGCTGTTCTTCCAGTCCTGGATTTAGCCCAAAGGCAGAATGGGTGGTTGCCCATCTCTGCTATGAACAAGGTTGCAGAAGTTTTACAAGTACCTCCAATAAGAGTATATGAAGTAGCAACTTTTTATACAATGTATAATCGAAAGCCAGTTGAAAAGTATCACATTCAGGTCTGCACTACTACACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:53224305|53224551 hsa-miR-130a-5p 0 0 1
chr19:53224305|53224551 hsa-miR-130a-3p 0 0 1
chr19:53224305|53224551 hsa-miR-301a-5p 0 0 1
chr19:53224305|53224551 hsa-miR-301a-3p 0 0 1
chr19:53224305|53224551 hsa-miR-130b-5p 0 0 1
chr19:53224305|53224551 hsa-miR-130b-3p 0 0 1
chr19:53224305|53224551 hsa-miR-376b-5p 0 0 1
chr19:53224305|53224551 hsa-miR-376b-3p 0 0 1
chr19:53224305|53224551 hsa-miR-568 0 0 1
chr19:53224305|53224551 hsa-miR-605-5p 0 0 1
chr19:53224305|53224551 hsa-miR-605-3p 0 0 1
chr19:53224305|53224551 hsa-miR-660-5p 0 0 1
chr19:53224305|53224551 hsa-miR-660-3p 0 0 1
chr19:53224305|53224551 hsa-miR-454-5p 0 0 1
chr19:53224305|53224551 hsa-miR-454-3p 0 0 1
chr19:53224305|53224551 hsa-miR-892b 0 0 1
chr19:53224305|53224551 hsa-miR-665 0 0 1
chr19:53224305|53224551 hsa-miR-301b-5p 0 0 1
chr19:53224305|53224551 hsa-miR-301b-3p 0 0 1
chr19:53224305|53224551 hsa-miR-1237-5p 0 0 1
chr19:53224305|53224551 hsa-miR-1237-3p 0 0 1
chr19:53224305|53224551 hsa-miR-1206 0 0 1
chr19:53224305|53224551 hsa-miR-548e-5p 0 0 1
chr19:53224305|53224551 hsa-miR-548e-3p 0 0 1
chr19:53224305|53224551 hsa-miR-1299 0 0 1
chr19:53224305|53224551 hsa-miR-1305 0 0 1
chr19:53224305|53224551 hsa-miR-1244 0 0 1
chr19:53224305|53224551 hsa-miR-548a-3p 0 0 1
chr19:53224305|53224551 hsa-miR-7 0 0 1
chr19:53224305|53224551 hsa-miR-548f 0 0 1
chr19:53224305|53224551 hsa-miR-516b 0 0 1
chr19:53224305|53224551 hsa-miR-544 0 0 1
chr19:53224305|53224551 hsa-miR-768-5p 0 0 1
chr19:53224305|53224551 hsa-miR-376a 0 0 1
chr19:53224305|53224551 hsa-miR-4498 1 0 0
chr19:53224305|53224551 hsa-miR-4656 1 0 0
chr19:53224305|53224551 hsa-miR-4754 1 0 0
chr19:53224305|53224551 hsa-miR-9718 1 0 0
chr19:53224305|53224551 hsa-miR-6753-5p 1 0 0
chr19:53224305|53224551 hsa-miR-6812-5p 1 0 0
chr19:53224305|53224551 hsa-miR-6803-5p 1 0 0
chr19:53224305|53224551 hsa-miR-3620-5p 1 0 0
chr19:53224305|53224551 hsa-miR-3129-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:53224305|53224551
ORF Type ORF1
Protein Length 56
Nucleotide Length 168
Protein Sequence MDLAQRQNGWLPISAMNKVAEVLQVPPIRVYEVATFYTMYNRKPVEKYHIQVCTTT
Nucleotide Sequence CTGGATTTAGCCCAAAGGCAGAATGGGTGGTTGCCCATCTCTGCTATGAACAAGGTTGCAGAAGTTTTACAAGTACCTCCAATAAGAGTATATGAAGTAGCAACTTTTTATACAATGTATAATCGAAAGCCAGTTGAAAAGTATCACATTCAGGTCTGCACTACTACA
CircID chr19:53224305|53224551
ORF Type ORF2
Protein Length 30
Nucleotide Length 93
Protein Sequence MFIAEMGNHPFCLWAKSRTGRTAAALWPSG
Nucleotide Sequence TTGTTCATAGCAGAGATGGGCAACCACCCATTCTGCCTTTGGGCTAAATCCAGGACTGGAAGAACAGCTGCTGCTTTATGGCCTTCTGGATAG
CircID chr19:53224305|53224551
ORF Type ORF3
Protein Length 29
Nucleotide Length 90
Protein Sequence MAFDYTLYKKLLLHILLLEVLVKLLQPCS
Nucleotide Sequence CTGGCTTTCGATTATACATTGTATAAAAAGTTGCTACTTCATATACTCTTATTGGAGGTACTTGTAAAACTTCTGCAACCTTGTTCATAG
CircID chr19:53224305|53224551
ORF Type ORF4
Protein Length 25
Nucleotide Length 75
Protein Sequence MEEQLLLYGLLDSFLQLPLSSYSFL
Nucleotide Sequence CTGGAAGAACAGCTGCTGCTTTATGGCCTTCTGGATAGTTTTTTACAATTGCCTCTATCCTCTTATAGTTTTCTG
CircID chr19:53224305|53224551
ORF Type ORF5
Protein Length 28
Nucleotide Length 87
Protein Sequence MNVILFNWLSIIHCIKSCYFIYSYWRYL
Nucleotide Sequence CTGAATGTGATACTTTTCAACTGGCTTTCGATTATACATTGTATAAAAAGTTGCTACTTCATATACTCTTATTGGAGGTACTTGTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab