CircRNA Information

General Information
circRNA Basic Information
CircID chr19:54118387|54121894
Strand +
CircType exon
Host Gene ENSG00000105618.12;
Algorism CIRI2;
Sequence GCGGTATTCAGGCGCGGCCTCCACTGGTCCCATCACTTCTGAAGCTTTGGCTTGCTTGCTGATATACTCCTCAATCTTCATCATAATCTCAGCAAACTGTAGGAAAGGAGAAGACAGTCAGAATCCAGCACTCTTCAAAAAGAAGCCTGTATCACCCCCTTCTGGGAGATTCTGTCTAGAGCCCCCTGCTAGGAACACCTCTTGTCCTCTTACCATCTTACTATCCCATAGCTTGGCGATGGTCTTGACTGAATCCCCGGAAAGATCCAGCTGTGTCTCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:54118387|54121894 hsa-miR-150-5p 0 0 1
chr19:54118387|54121894 hsa-miR-150-3p 0 0 1
chr19:54118387|54121894 hsa-miR-345-5p 0 0 1
chr19:54118387|54121894 hsa-miR-345-3p 0 0 1
chr19:54118387|54121894 hsa-miR-384 0 0 1
chr19:54118387|54121894 hsa-miR-545-5p 0 0 1
chr19:54118387|54121894 hsa-miR-545-3p 0 0 1
chr19:54118387|54121894 hsa-miR-650 0 0 1
chr19:54118387|54121894 hsa-miR-942-5p 0 0 1
chr19:54118387|54121894 hsa-miR-942-3p 0 0 1
chr19:54118387|54121894 hsa-miR-943 0 0 1
chr19:54118387|54121894 hsa-miR-1180-5p 0 0 1
chr19:54118387|54121894 hsa-miR-1180-3p 0 0 1
chr19:54118387|54121894 hsa-miR-1287-5p 0 0 1
chr19:54118387|54121894 hsa-miR-1287-3p 0 0 1
chr19:54118387|54121894 hsa-miR-1272 0 0 1
chr19:54118387|54121894 hsa-miR-1322 0 0 1
chr19:54118387|54121894 hsa-miR-139-5p 0 0 1
chr19:54118387|54121894 hsa-miR-512-3p 0 0 1
chr19:54118387|54121894 hsa-miR-1224-5p 0 0 1
chr19:54118387|54121894 hsa-miR-532-3p 0 0 1
chr19:54118387|54121894 hsa-miR-542-5p 0 0 1
chr19:54118387|54121894 hsa-miR-1207-3p 0 0 1
chr19:54118387|54121894 hsa-miR-582-5p 0 0 1
chr19:54118387|54121894 hsa-miR-628-5p 0 0 1
chr19:54118387|54121894 hsa-miR-622 1 0 0
chr19:54118387|54121894 hsa-miR-4298 1 0 0
chr19:54118387|54121894 hsa-miR-3907 1 0 0
chr19:54118387|54121894 hsa-miR-4440 1 0 0
chr19:54118387|54121894 hsa-miR-2392 1 0 0
chr19:54118387|54121894 hsa-miR-4647 1 0 0
chr19:54118387|54121894 hsa-miR-4651 1 0 0
chr19:54118387|54121894 hsa-miR-6081 1 0 0
chr19:54118387|54121894 hsa-miR-9899 1 0 0
chr19:54118387|54121894 hsa-miR-4433b-3p 1 0 0
chr19:54118387|54121894 hsa-miR-4433a-3p 1 0 0
chr19:54118387|54121894 hsa-miR-6894-5p 1 0 0
chr19:54118387|54121894 hsa-miR-6857-5p 1 0 0
chr19:54118387|54121894 hsa-miR-6728-5p 1 0 0
chr19:54118387|54121894 hsa-miR-139-3p 1 0 0
chr19:54118387|54121894 hsa-miR-6757-5p 1 0 0
chr19:54118387|54121894 hsa-miR-8069 1 0 0
chr19:54118387|54121894 hsa-miR-3605-5p 1 0 0
chr19:54118387|54121894 hsa-miR-6732-5p 1 0 0
chr19:54118387|54121894 hsa-miR-6881-5p 1 0 0
chr19:54118387|54121894 hsa-miR-3194-5p 1 0 0
chr19:54118387|54121894 hsa-miR-1226-5p 1 0 0
chr19:54118387|54121894 hsa-miR-4640-5p 1 0 0
chr19:54118387|54121894 hsa-miR-4690-5p 1 0 0
chr19:54118387|54121894 hsa-miR-6847-5p 1 0 0
chr19:54118387|54121894 hsa-miR-193a-5p 1 0 0
chr19:54118387|54121894 hsa-miR-3162-5p 1 0 0
chr19:54118387|54121894 hsa-miR-4742-3p 1 0 0
chr19:54118387|54121894 hsa-miR-3619-3p 1 0 0
chr19:54118387|54121894 hsa-miR-6801-5p 1 0 0
chr19:54118387|54121894 hsa-miR-6792-5p 1 0 0
chr19:54118387|54121894 hsa-miR-1207-5p 1 0 0
chr19:54118387|54121894 hsa-miR-4763-3p 1 0 0
chr19:54118387|54121894 hsa-miR-6865-5p 1 0 0
chr19:54118387|54121894 hsa-miR-6803-5p 1 0 0
chr19:54118387|54121894 hsa-miR-6851-5p 1 0 0
chr19:54118387|54121894 hsa-miR-6751-5p 1 0 0
chr19:54118387|54121894 hsa-miR-5196-5p 1 0 0
chr19:54118387|54121894 hsa-miR-1237-5p 1 0 0
chr19:54118387|54121894 hsa-miR-328-5p 1 0 0
chr19:54118387|54121894 hsa-miR-4726-5p 1 0 0
chr19:54118387|54121894 hsa-miR-6738-5p 1 0 0
chr19:54118387|54121894 hsa-miR-6777-5p 1 0 0
chr19:54118387|54121894 hsa-miR-6795-5p 1 0 0
chr19:54118387|54121894 hsa-miR-6858-5p 1 0 0
chr19:54118387|54121894 hsa-miR-6883-5p 1 0 0
chr19:54118387|54121894 hsa-miR-4769-5p 1 0 0
chr19:54118387|54121894 hsa-miR-6511b-5p 1 0 0
chr19:54118387|54121894 hsa-miR-6856-5p 1 0 0
chr19:54118387|54121894 hsa-miR-3679-5p 1 0 0
chr19:54118387|54121894 hsa-miR-6762-5p 1 0 0
chr19:54118387|54121894 hsa-miR-769-3p 1 0 0
chr19:54118387|54121894 hsa-miR-9851-3p 1 0 0
chr19:54118387|54121894 hsa-miR-6859-5p 1 0 0
chr19:54118387|54121894 hsa-miR-3619-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:54118387|54121894
ORF Type ORF1
Protein Length 78
Nucleotide Length 234
Protein Sequence MACLLIYSSIFIIISANCRKGEDSQNPALFKKKPVSPPSGRFCLEPPARNTSCPLTILLSHSLAMVLTESPERSSCVS
Nucleotide Sequence TTGGCTTGCTTGCTGATATACTCCTCAATCTTCATCATAATCTCAGCAAACTGTAGGAAAGGAGAAGACAGTCAGAATCCAGCACTCTTCAAAAAGAAGCCTGTATCACCCCCTTCTGGGAGATTCTGTCTAGAGCCCCCTGCTAGGAACACCTCTTGTCCTCTTACCATCTTACTATCCCATAGCTTGGCGATGGTCTTGACTGAATCCCCGGAAAGATCCAGCTGTGTCTCC
CircID chr19:54118387|54121894
ORF Type ORF2
Protein Length 50
Nucleotide Length 153
Protein Sequence MDLSGDSVKTIAKLWDSKMVRGQEVFLAGGSRQNLPEGGDTGFFLKSAGF
Nucleotide Sequence CTGGATCTTTCCGGGGATTCAGTCAAGACCATCGCCAAGCTATGGGATAGTAAGATGGTAAGAGGACAAGAGGTGTTCCTAGCAGGGGGCTCTAGACAGAATCTCCCAGAAGGGGGTGATACAGGCTTCTTTTTGAAGAGTGCTGGATTCTGA
CircID chr19:54118387|54121894
ORF Type ORF3
Protein Length 39
Nucleotide Length 117
Protein Sequence MSSPFLQFAEIMMKIEEYISKQAKASEVMGPVEAAPEYR
Nucleotide Sequence CTGTCTTCTCCTTTCCTACAGTTTGCTGAGATTATGATGAAGATTGAGGAGTATATCAGCAAGCAAGCCAAAGCTTCAGAAGTGATGGGACCAGTGGAGGCCGCGCCTGAATACCGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab