CircRNA Information

General Information
circRNA Basic Information
CircID chr19:54123765|54123918
Strand +
CircType exon
Host Gene ENSG00000105618.12;
Algorism CIRI2;
Sequence CCATGATCTTGGCGGCCGTGGATGCCCCGATAATGATGGACAGGTTGGGTGCGATGAAGGACATCCGGGACTCCACATACTCGTAGATGCGGTGCTTGGAGGCGTTCAGCTCCAGCGCCATGTCGCAGGCCTCCTCCAGCCGCTCCAGCTCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:54123765|54123918 hsa-miR-205-5p 0 0 1
chr19:54123765|54123918 hsa-miR-205-3p 0 0 1
chr19:54123765|54123918 hsa-miR-614 0 0 1
chr19:54123765|54123918 hsa-miR-649 0 0 1
chr19:54123765|54123918 hsa-miR-652-5p 0 0 1
chr19:54123765|54123918 hsa-miR-652-3p 0 0 1
chr19:54123765|54123918 hsa-miR-765 0 0 1
chr19:54123765|54123918 hsa-miR-708-5p 0 0 1
chr19:54123765|54123918 hsa-miR-708-3p 0 0 1
chr19:54123765|54123918 hsa-miR-1281 0 0 1
chr19:54123765|54123918 hsa-miR-299-3p 0 0 1
chr19:54123765|54123918 hsa-miR-1289 0 1 1
chr19:54123765|54123918 hsa-miR-28-5p 0 0 1
chr19:54123765|54123918 hsa-miR-663a 1 0 0
chr19:54123765|54123918 hsa-miR-762 1 0 0
chr19:54123765|54123918 hsa-miR-3196 1 0 0
chr19:54123765|54123918 hsa-miR-4309 0 1 0
chr19:54123765|54123918 hsa-miR-3652 0 1 0
chr19:54123765|54123918 hsa-miR-4430 1 1 0
chr19:54123765|54123918 hsa-miR-3135b 1 1 0
chr19:54123765|54123918 hsa-miR-4491 0 1 0
chr19:54123765|54123918 hsa-miR-4498 1 0 0
chr19:54123765|54123918 hsa-miR-4508 1 0 0
chr19:54123765|54123918 hsa-miR-1587 1 0 0
chr19:54123765|54123918 hsa-miR-3960 1 0 0
chr19:54123765|54123918 hsa-miR-3977 1 1 0
chr19:54123765|54123918 hsa-miR-5695 0 1 0
chr19:54123765|54123918 hsa-miR-6085 1 0 0
chr19:54123765|54123918 hsa-miR-8072 1 0 0
chr19:54123765|54123918 hsa-miR-4433b-3p 1 0 0
chr19:54123765|54123918 hsa-miR-6765-5p 1 0 0
chr19:54123765|54123918 hsa-miR-6799-5p 1 0 0
chr19:54123765|54123918 hsa-miR-7114-5p 1 0 0
chr19:54123765|54123918 hsa-miR-6727-5p 1 1 0
chr19:54123765|54123918 hsa-miR-4474-3p 1 0 0
chr19:54123765|54123918 hsa-miR-3180-3p 1 0 0
chr19:54123765|54123918 hsa-miR-6829-5p 1 0 0
chr19:54123765|54123918 hsa-miR-6732-5p 1 0 0
chr19:54123765|54123918 hsa-miR-6874-5p 1 1 0
chr19:54123765|54123918 hsa-miR-4783-5p 1 0 0
chr19:54123765|54123918 hsa-miR-4446-3p 1 0 0
chr19:54123765|54123918 hsa-miR-92a-3p 1 0 0
chr19:54123765|54123918 hsa-miR-3912-5p 0 1 0
chr19:54123765|54123918 hsa-miR-6722-5p 1 0 0
chr19:54123765|54123918 hsa-miR-10400-5p 1 0 0
chr19:54123765|54123918 hsa-miR-1233-5p 1 0 0
chr19:54123765|54123918 hsa-miR-4763-3p 1 0 0
chr19:54123765|54123918 hsa-miR-6816-5p 1 0 0
chr19:54123765|54123918 hsa-miR-5001-5p 1 0 0
chr19:54123765|54123918 hsa-miR-6726-5p 1 1 0
chr19:54123765|54123918 hsa-miR-6743-5p 1 0 0
chr19:54123765|54123918 hsa-miR-6803-5p 1 0 0
chr19:54123765|54123918 hsa-miR-6813-5p 1 0 0
chr19:54123765|54123918 hsa-miR-6851-5p 1 0 0
chr19:54123765|54123918 hsa-miR-3620-5p 1 0 0
chr19:54123765|54123918 hsa-miR-1237-5p 1 0 0
chr19:54123765|54123918 hsa-miR-6846-5p 1 0 0
chr19:54123765|54123918 hsa-miR-6848-5p 1 0 0
chr19:54123765|54123918 hsa-miR-939-5p 0 1 0
chr19:54123765|54123918 hsa-miR-3198 0 1 0
chr19:54123765|54123918 hsa-miR-5699-3p 0 1 0
chr19:54123765|54123918 hsa-miR-92b-3p 1 0 0
chr19:54123765|54123918 hsa-miR-487b-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr19:54123765|54123918
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MILAAVDAPIMMDRLGAMKDIRDSTYS
Nucleotide Sequence ATGATCTTGGCGGCCGTGGATGCCCCGATAATGATGGACAGGTTGGGTGCGATGAAGGACATCCGGGACTCCACATACTCGTAG

CircID chr19:54123765|54123918
ORF Type ORF2
Protein Length 49
Nucleotide Length 147
Protein Sequence MERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIM
Nucleotide Sequence CTGGAGCGGCTGGAGGAGGCCTGCGACATGGCGCTGGAGCTGAACGCCTCCAAGCACCGCATCTACGAGTATGTGGAGTCCCGGATGTCCTTCATCGCACCCAACCTGTCCATCATTATCGGGGCATCCACGGCCGCCAAGATCATG

CircID chr19:54123765|54123918
ORF Type ORF3
Protein Length 26
Nucleotide Length 78
Protein Sequence MWSPGCPSSHPTCPSLSGHPRPPRSW
Nucleotide Sequence ATGTGGAGTCCCGGATGTCCTTCATCGCACCCAACCTGTCCATCATTATCGGGGCATCCACGGCCGCCAAGATCATGG

CircID chr19:54123765|54123918
ORF Type ORF4
Protein Length 42
Nucleotide Length 126
Protein Sequence MRHGAGAERLQAPHLRVCGVPDVLHRTQPVHHYRGIHGRQDH
Nucleotide Sequence CTGCGACATGGCGCTGGAGCTGAACGCCTCCAAGCACCGCATCTACGAGTATGTGGAGTCCCGGATGTCCTTCATCGCACCCAACCTGTCCATCATTATCGGGGCATCCACGGCCGCCAAGATCAT

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites