CircRNA Information

General Information
circRNA Basic Information
CircID chr19:54142956|54143186
Strand +
CircType exon
Host Gene ENSG00000088038.16;
Algorism CIRI2;
Sequence CTTCTGCCAAATATCTTCAAACTGCTCCACGCCCTCGGACACCTTCTTGAGGCAGCGATCAATCTCACCTGGCCAGGGAGGAACAAGGCTGTGAGAATCCTGCCCAGGTGGCAGGTATCTAAAGAGCAGTCCTCAGAAGAGGGAGCATGTGGCTACAGGTGCAGCAGGAAGTCAGTCTAGTACCTTGGAGTTTGCGCTTGTCCGCCATCTTCCCTGCCCTACAGACGCACT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:54142956|54143186 hsa-miR-96-5p 0 0 1
chr19:54142956|54143186 hsa-miR-96-3p 0 0 1
chr19:54142956|54143186 hsa-miR-182-5p 0 0 1
chr19:54142956|54143186 hsa-miR-182-3p 0 0 1
chr19:54142956|54143186 hsa-miR-370-5p 0 0 1
chr19:54142956|54143186 hsa-miR-370-3p 0 0 1
chr19:54142956|54143186 hsa-miR-612 0 1 1
chr19:54142956|54143186 hsa-miR-617 0 0 1
chr19:54142956|54143186 hsa-miR-639 0 0 1
chr19:54142956|54143186 hsa-miR-1271-5p 0 0 1
chr19:54142956|54143186 hsa-miR-1271-3p 0 0 1
chr19:54142956|54143186 hsa-miR-298 0 0 1
chr19:54142956|54143186 hsa-miR-1229-5p 0 0 1
chr19:54142956|54143186 hsa-miR-1229-3p 0 0 1
chr19:54142956|54143186 hsa-miR-1288-5p 0 0 1
chr19:54142956|54143186 hsa-miR-1288-3p 0 0 1
chr19:54142956|54143186 hsa-miR-125a-3p 0 1 1
chr19:54142956|54143186 hsa-miR-28-3p 0 0 1
chr19:54142956|54143186 hsa-miR-1224-5p 0 0 1
chr19:54142956|54143186 hsa-miR-1207-5p 1 1 1
chr19:54142956|54143186 hsa-miR-342-3p 0 0 1
chr19:54142956|54143186 hsa-miR-642 0 0 1
chr19:54142956|54143186 hsa-miR-1285 0 0 1
chr19:54142956|54143186 hsa-miR-1268 0 0 1
chr19:54142956|54143186 hsa-miR-151-3p 0 0 1
chr19:54142956|54143186 hsa-miR-1268a 1 0 0
chr19:54142956|54143186 hsa-miR-2861 1 0 0
chr19:54142956|54143186 hsa-miR-3141 1 0 0
chr19:54142956|54143186 hsa-miR-3147 1 0 0
chr19:54142956|54143186 hsa-miR-4298 1 0 0
chr19:54142956|54143186 hsa-miR-4312 0 1 0
chr19:54142956|54143186 hsa-miR-4320 0 1 0
chr19:54142956|54143186 hsa-miR-3911 1 0 0
chr19:54142956|54143186 hsa-miR-1268b 1 0 0
chr19:54142956|54143186 hsa-miR-4449 1 0 0
chr19:54142956|54143186 hsa-miR-4469 0 1 0
chr19:54142956|54143186 hsa-miR-4488 1 0 0
chr19:54142956|54143186 hsa-miR-4510 1 0 0
chr19:54142956|54143186 hsa-miR-4669 1 1 0
chr19:54142956|54143186 hsa-miR-4688 1 0 0
chr19:54142956|54143186 hsa-miR-4706 1 0 0
chr19:54142956|54143186 hsa-miR-4718 0 1 0
chr19:54142956|54143186 hsa-miR-4721 1 0 0
chr19:54142956|54143186 hsa-miR-4730 0 1 0
chr19:54142956|54143186 hsa-miR-4734 1 0 0
chr19:54142956|54143186 hsa-miR-4739 1 1 0
chr19:54142956|54143186 hsa-miR-5090 1 0 0
chr19:54142956|54143186 hsa-miR-5695 0 1 0
chr19:54142956|54143186 hsa-miR-5698 1 0 0
chr19:54142956|54143186 hsa-miR-6081 1 0 0
chr19:54142956|54143186 hsa-miR-6127 1 0 0
chr19:54142956|54143186 hsa-miR-6130 1 0 0
chr19:54142956|54143186 hsa-miR-6860 0 1 0
chr19:54142956|54143186 hsa-miR-9500 0 1 0
chr19:54142956|54143186 hsa-miR-12115 1 0 0
chr19:54142956|54143186 hsa-miR-12119 1 1 0
chr19:54142956|54143186 hsa-miR-6749-3p 0 1 0
chr19:54142956|54143186 hsa-miR-6804-5p 1 0 0
chr19:54142956|54143186 hsa-miR-6721-5p 0 1 0
chr19:54142956|54143186 hsa-miR-6796-5p 1 1 0
chr19:54142956|54143186 hsa-miR-6732-5p 1 0 0
chr19:54142956|54143186 hsa-miR-6805-5p 1 0 0
chr19:54142956|54143186 hsa-miR-4436b-5p 1 0 0
chr19:54142956|54143186 hsa-miR-6786-5p 1 0 0
chr19:54142956|54143186 hsa-miR-1226-5p 1 0 0
chr19:54142956|54143186 hsa-miR-1228-5p 1 0 0
chr19:54142956|54143186 hsa-miR-519d-5p 1 0 0
chr19:54142956|54143186 hsa-miR-2276-5p 1 0 0
chr19:54142956|54143186 hsa-miR-3074-5p 1 1 0
chr19:54142956|54143186 hsa-miR-6767-3p 0 1 0
chr19:54142956|54143186 hsa-miR-449b-3p 0 1 0
chr19:54142956|54143186 hsa-miR-500a-3p 0 1 0
chr19:54142956|54143186 hsa-miR-4763-3p 1 1 0
chr19:54142956|54143186 hsa-miR-6893-5p 1 0 0
chr19:54142956|54143186 hsa-miR-6743-5p 1 0 0
chr19:54142956|54143186 hsa-miR-6756-5p 1 0 0
chr19:54142956|54143186 hsa-miR-6879-5p 1 1 0
chr19:54142956|54143186 hsa-miR-3127-3p 1 0 0
chr19:54142956|54143186 hsa-miR-1915-3p 1 0 0
chr19:54142956|54143186 hsa-miR-4728-5p 1 0 0
chr19:54142956|54143186 hsa-miR-1237-5p 1 0 0
chr19:54142956|54143186 hsa-miR-328-5p 1 0 0
chr19:54142956|54143186 hsa-miR-4632-5p 1 1 0
chr19:54142956|54143186 hsa-miR-4649-5p 1 0 0
chr19:54142956|54143186 hsa-miR-6729-5p 1 0 0
chr19:54142956|54143186 hsa-miR-4436b-3p 1 1 0
chr19:54142956|54143186 hsa-miR-6885-5p 1 0 0
chr19:54142956|54143186 hsa-miR-550a-5p 1 0 0
chr19:54142956|54143186 hsa-miR-6727-3p 0 1 0
chr19:54142956|54143186 hsa-miR-6893-3p 0 1 0
chr19:54142956|54143186 hsa-miR-4691-5p 1 0 0
chr19:54142956|54143186 hsa-miR-135a-2-3p 0 1 0
chr19:54142956|54143186 hsa-miR-664a-5p 0 1 0
chr19:54142956|54143186 hsa-miR-513c-5p 0 1 0
chr19:54142956|54143186 hsa-miR-6855-3p 0 1 0
chr19:54142956|54143186 hsa-miR-151a-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:54142956|54143186
ORF Type ORF1
Protein Length 58
Nucleotide Length 177
Protein Sequence MPNIFKLLHALGHLLEAAINLTWPGRNKAVRILPRWQVSKEQSSEEGACGYRCSRKSV
Nucleotide Sequence CTGCCAAATATCTTCAAACTGCTCCACGCCCTCGGACACCTTCTTGAGGCAGCGATCAATCTCACCTGGCCAGGGAGGAACAAGGCTGTGAGAATCCTGCCCAGGTGGCAGGTATCTAAAGAGCAGTCCTCAGAAGAGGGAGCATGTGGCTACAGGTGCAGCAGGAAGTCAGTCTAG

CircID chr19:54142956|54143186
ORF Type ORF2
Protein Length 28
Nucleotide Length 84
Protein Sequence MWLQVQQEVSLVPWSLRLSAIFPALQTH
Nucleotide Sequence ATGTGGCTACAGGTGCAGCAGGAAGTCAGTCTAGTACCTTGGAGTTTGCGCTTGTCCGCCATCTTCCCTGCCCTACAGACGCAC

CircID chr19:54142956|54143186
ORF Type ORF3
Protein Length 43
Nucleotide Length 129
Protein Sequence MLFRYLPPGQDSHSLVPPWPGEIDRCLKKVSEGVEQFEDIWQK
Nucleotide Sequence CTGCTCTTTAGATACCTGCCACCTGGGCAGGATTCTCACAGCCTTGTTCCTCCCTGGCCAGGTGAGATTGATCGCTGCCTCAAGAAGGTGTCCGAGGGCGTGGAGCAGTTTGAAGATATTTGGCAGAAG

CircID chr19:54142956|54143186
ORF Type ORF4
Protein Length 35
Nucleotide Length 105
Protein Sequence MGRILTALFLPGQVRLIAASRRCPRAWSSLKIFGR
Nucleotide Sequence CTGGGCAGGATTCTCACAGCCTTGTTCCTCCCTGGCCAGGTGAGATTGATCGCTGCCTCAAGAAGGTGTCCGAGGGCGTGGAGCAGTTTGAAGATATTTGGCAGA

CircID chr19:54142956|54143186
ORF Type ORF5
Protein Length 29
Nucleotide Length 90
Protein Sequence MADKRKLQGTRLTSCCTCSHMLPLLRTAL
Nucleotide Sequence ATGGCGGACAAGCGCAAACTCCAAGGTACTAGACTGACTTCCTGCTGCACCTGTAGCCACATGCTCCCTCTTCTGAGGACTGCTCTTTAG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites