CircRNA Information

General Information
circRNA Basic Information
CircID chr19:541587|541848
Strand -
CircType exon
Host Gene ENSG00000099804.7;
Algorism CIRI2;
Sequence TAGGGCCGGACCCGTGGCTCCTTAGACGACAGACTACCTCACGGAGGTTTTGTGCTGGTCCCCGTCTCCTCTGGTTGTTTCGTTTTGGCTTTTTCTCCCTCCCCATGTCTGTTCTGGGTTTTCACGTGCTTCAGAGAAGAGGGGCTGCCCCACCGCCACTCACGTCACTCGGGGCTCGGTGGACGGGCCCAGGGTGGGAGCGGCCGGCCCACCTGTCCCCTCGGGAGGGGAGCTGAGCCCGACTTCTACCGGGGTCCCCCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:541587|541848 hsa-let-7b-5p 0 0 1
chr19:541587|541848 hsa-let-7b-3p 0 0 1
chr19:541587|541848 hsa-let-7c-5p 0 0 1
chr19:541587|541848 hsa-let-7c-3p 0 0 1
chr19:541587|541848 hsa-let-7d-5p 0 0 1
chr19:541587|541848 hsa-let-7d-3p 0 0 1
chr19:541587|541848 hsa-let-7e-5p 0 0 1
chr19:541587|541848 hsa-let-7e-3p 0 0 1
chr19:541587|541848 hsa-miR-98-5p 0 0 1
chr19:541587|541848 hsa-miR-98-3p 0 0 1
chr19:541587|541848 hsa-let-7g-5p 0 0 1
chr19:541587|541848 hsa-let-7g-3p 0 0 1
chr19:541587|541848 hsa-let-7i-5p 0 0 1
chr19:541587|541848 hsa-let-7i-3p 0 0 1
chr19:541587|541848 hsa-miR-196b-5p 0 0 1
chr19:541587|541848 hsa-miR-196b-3p 0 0 1
chr19:541587|541848 hsa-miR-202-5p 0 0 1
chr19:541587|541848 hsa-miR-202-3p 0 0 1
chr19:541587|541848 hsa-miR-552-5p 0 0 1
chr19:541587|541848 hsa-miR-552-3p 0 0 1
chr19:541587|541848 hsa-miR-570-5p 0 0 1
chr19:541587|541848 hsa-miR-570-3p 0 0 1
chr19:541587|541848 hsa-miR-625-5p 0 0 1
chr19:541587|541848 hsa-miR-625-3p 0 0 1
chr19:541587|541848 hsa-miR-634 0 1 1
chr19:541587|541848 hsa-miR-637 0 1 1
chr19:541587|541848 hsa-miR-541-5p 0 0 1
chr19:541587|541848 hsa-miR-541-3p 0 0 1
chr19:541587|541848 hsa-miR-939-5p 0 0 1
chr19:541587|541848 hsa-miR-939-3p 0 0 1
chr19:541587|541848 hsa-miR-942-5p 0 0 1
chr19:541587|541848 hsa-miR-942-3p 0 0 1
chr19:541587|541848 hsa-miR-1294 0 1 1
chr19:541587|541848 hsa-miR-1247-5p 0 0 1
chr19:541587|541848 hsa-miR-1247-3p 0 0 1
chr19:541587|541848 hsa-miR-1275 0 0 1
chr19:541587|541848 hsa-miR-1225-3p 0 1 1
chr19:541587|541848 hsa-miR-296-5p 0 0 1
chr19:541587|541848 hsa-miR-486-3p 0 1 1
chr19:541587|541848 hsa-miR-615-3p 0 0 1
chr19:541587|541848 hsa-miR-532-3p 0 1 1
chr19:541587|541848 hsa-miR-654-5p 0 1 1
chr19:541587|541848 hsa-miR-1224-3p 0 0 1
chr19:541587|541848 hsa-miR-483-5p 0 0 1
chr19:541587|541848 hsa-miR-1260 0 0 1
chr19:541587|541848 hsa-miR-1280 0 0 1
chr19:541587|541848 hsa-let-7a 0 0 1
chr19:541587|541848 hsa-let-7f 0 0 1
chr19:541587|541848 hsa-miR-24 0 0 1
chr19:541587|541848 hsa-miR-196a 0 0 1
chr19:541587|541848 hsa-miR-326 0 1 0
chr19:541587|541848 hsa-miR-484 1 1 0
chr19:541587|541848 hsa-miR-608 1 1 0
chr19:541587|541848 hsa-miR-663a 1 0 0
chr19:541587|541848 hsa-miR-762 1 0 0
chr19:541587|541848 hsa-miR-1248 0 1 0
chr19:541587|541848 hsa-miR-3175 1 0 0
chr19:541587|541848 hsa-miR-4257 1 0 0
chr19:541587|541848 hsa-miR-4268 0 1 0
chr19:541587|541848 hsa-miR-4292 0 1 0
chr19:541587|541848 hsa-miR-4521 0 1 0
chr19:541587|541848 hsa-miR-4651 1 0 0
chr19:541587|541848 hsa-miR-4689 1 0 0
chr19:541587|541848 hsa-miR-4706 1 0 0
chr19:541587|541848 hsa-miR-4739 1 1 0
chr19:541587|541848 hsa-miR-4784 1 1 0
chr19:541587|541848 hsa-miR-5739 1 0 0
chr19:541587|541848 hsa-miR-6088 1 0 0
chr19:541587|541848 hsa-miR-6090 1 0 0
chr19:541587|541848 hsa-miR-6127 1 0 0
chr19:541587|541848 hsa-miR-6133 1 0 0
chr19:541587|541848 hsa-miR-9986 0 1 0
chr19:541587|541848 hsa-miR-12118 1 0 0
chr19:541587|541848 hsa-miR-12119 0 1 0
chr19:541587|541848 hsa-miR-6765-5p 1 0 0
chr19:541587|541848 hsa-miR-7106-5p 1 0 0
chr19:541587|541848 hsa-miR-6825-5p 1 0 0
chr19:541587|541848 hsa-miR-6857-5p 1 0 0
chr19:541587|541848 hsa-miR-139-3p 0 1 0
chr19:541587|541848 hsa-miR-1236-5p 1 1 0
chr19:541587|541848 hsa-miR-6757-5p 1 0 0
chr19:541587|541848 hsa-miR-4695-5p 1 1 0
chr19:541587|541848 hsa-miR-6746-5p 1 0 0
chr19:541587|541848 hsa-miR-6890-5p 1 0 0
chr19:541587|541848 hsa-miR-24-3p 0 1 0
chr19:541587|541848 hsa-miR-6762-3p 0 1 0
chr19:541587|541848 hsa-miR-6787-3p 0 1 0
chr19:541587|541848 hsa-miR-6742-5p 1 0 0
chr19:541587|541848 hsa-miR-1292-5p 1 0 0
chr19:541587|541848 hsa-miR-3180-3p 1 0 0
chr19:541587|541848 hsa-miR-877-3p 0 1 0
chr19:541587|541848 hsa-miR-6827-5p 1 0 0
chr19:541587|541848 hsa-miR-3126-5p 1 0 0
chr19:541587|541848 hsa-miR-6760-5p 0 1 0
chr19:541587|541848 hsa-miR-6786-5p 0 1 0
chr19:541587|541848 hsa-miR-7109-5p 1 0 0
chr19:541587|541848 hsa-miR-3944-3p 1 1 0
chr19:541587|541848 hsa-miR-1229-5p 1 0 0
chr19:541587|541848 hsa-miR-6771-5p 1 0 0
chr19:541587|541848 hsa-miR-92b-5p 1 0 0
chr19:541587|541848 hsa-miR-6847-5p 0 1 0
chr19:541587|541848 hsa-miR-3202 1 0 0
chr19:541587|541848 hsa-miR-4787-5p 1 0 0
chr19:541587|541848 hsa-miR-149-3p 1 0 0
chr19:541587|541848 hsa-miR-6736-3p 0 1 0
chr19:541587|541848 hsa-miR-6878-5p 1 1 0
chr19:541587|541848 hsa-miR-6769a-3p 0 1 0
chr19:541587|541848 hsa-miR-423-5p 1 0 0
chr19:541587|541848 hsa-miR-6743-3p 0 1 0
chr19:541587|541848 hsa-let-7f-5p 0 1 0
chr19:541587|541848 hsa-let-7a-5p 0 1 0
chr19:541587|541848 hsa-miR-4652-5p 1 0 0
chr19:541587|541848 hsa-miR-2114-5p 0 1 0
chr19:541587|541848 hsa-miR-3605-3p 0 1 0
chr19:541587|541848 hsa-miR-3620-3p 0 1 0
chr19:541587|541848 hsa-miR-3144-5p 0 1 0
chr19:541587|541848 hsa-miR-196a-5p 0 1 0
chr19:541587|541848 hsa-miR-1207-5p 1 0 0
chr19:541587|541848 hsa-miR-6787-5p 1 0 0
chr19:541587|541848 hsa-miR-6812-5p 1 0 0
chr19:541587|541848 hsa-miR-6870-5p 1 0 0
chr19:541587|541848 hsa-miR-6756-5p 1 0 0
chr19:541587|541848 hsa-miR-6803-5p 1 0 0
chr19:541587|541848 hsa-miR-6819-5p 1 0 0
chr19:541587|541848 hsa-miR-6842-5p 1 0 0
chr19:541587|541848 hsa-miR-6851-5p 1 0 0
chr19:541587|541848 hsa-miR-1249-5p 1 1 0
chr19:541587|541848 hsa-miR-6780a-5p 1 1 0
chr19:541587|541848 hsa-miR-6797-5p 1 1 0
chr19:541587|541848 hsa-miR-6875-5p 1 0 0
chr19:541587|541848 hsa-miR-7111-5p 1 1 0
chr19:541587|541848 hsa-miR-4728-5p 1 1 0
chr19:541587|541848 hsa-miR-5196-5p 1 0 0
chr19:541587|541848 hsa-miR-1237-5p 1 0 0
chr19:541587|541848 hsa-miR-328-5p 1 0 0
chr19:541587|541848 hsa-miR-4749-5p 1 0 0
chr19:541587|541848 hsa-miR-6738-5p 1 0 0
chr19:541587|541848 hsa-miR-6794-5p 1 0 0
chr19:541587|541848 hsa-miR-6795-5p 1 1 0
chr19:541587|541848 hsa-miR-6858-5p 1 0 0
chr19:541587|541848 hsa-miR-6887-5p 1 1 0
chr19:541587|541848 hsa-miR-4758-5p 0 1 0
chr19:541587|541848 hsa-miR-4665-5p 0 1 0
chr19:541587|541848 hsa-miR-4716-3p 1 0 0
chr19:541587|541848 hsa-miR-6750-5p 1 0 0
chr19:541587|541848 hsa-miR-6785-5p 1 0 0
chr19:541587|541848 hsa-miR-4667-5p 1 0 0
chr19:541587|541848 hsa-miR-6724-5p 1 1 0
chr19:541587|541848 hsa-miR-6791-5p 0 1 0
chr19:541587|541848 hsa-miR-6783-3p 0 1 0
chr19:541587|541848 hsa-miR-1912-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr19:541587|541848
ORF Type ORF1
Protein Length 69
Nucleotide Length 207
Protein Sequence MVPVSSGCFVLAFSPSPCLFWVFTCFREEGLPHRHSRHSGLGGRAQGGSGRPTCPLGRGAEPDFYRGPP
Nucleotide Sequence CTGGTCCCCGTCTCCTCTGGTTGTTTCGTTTTGGCTTTTTCTCCCTCCCCATGTCTGTTCTGGGTTTTCACGTGCTTCAGAGAAGAGGGGCTGCCCCACCGCCACTCACGTCACTCGGGGCTCGGTGGACGGGCCCAGGGTGGGAGCGGCCGGCCCACCTGTCCCCTCGGGAGGGGAGCTGAGCCCGACTTCTACCGGGGTCCCCCA

CircID chr19:541587|541848
ORF Type ORF2
Protein Length 71
Nucleotide Length 213
Protein Sequence MCWSPSPLVVSFWLFLPPHVCSGFSRASEKRGCPTATHVTRGSVDGPRVGAAGPPVPSGGELSPTSTGVPQ
Nucleotide Sequence TTGTGCTGGTCCCCGTCTCCTCTGGTTGTTTCGTTTTGGCTTTTTCTCCCTCCCCATGTCTGTTCTGGGTTTTCACGTGCTTCAGAGAAGAGGGGCTGCCCCACCGCCACTCACGTCACTCGGGGCTCGGTGGACGGGCCCAGGGTGGGAGCGGCCGGCCCACCTGTCCCCTCGGGAGGGGAGCTGAGCCCGACTTCTACCGGGGTCCCCCAG

CircID chr19:541587|541848
ORF Type ORF3
Protein Length 53
Nucleotide Length 162
Protein Sequence MFRFGFFSLPMSVLGFHVLQRRGAAPPPLTSLGARWTGPGWERPAHLSPREGS
Nucleotide Sequence TTGTTTCGTTTTGGCTTTTTCTCCCTCCCCATGTCTGTTCTGGGTTTTCACGTGCTTCAGAGAAGAGGGGCTGCCCCACCGCCACTCACGTCACTCGGGGCTCGGTGGACGGGCCCAGGGTGGGAGCGGCCGGCCCACCTGTCCCCTCGGGAGGGGAGCTGA

CircID chr19:541587|541848
ORF Type ORF4
Protein Length 43
Nucleotide Length 132
Protein Sequence LGDPGRSRAQLPSRGDRWAGRSHPGPVHRAPSDVSGGGAAPLL
Nucleotide Sequence CTGGGGGACCCCGGTAGAAGTCGGGCTCAGCTCCCCTCCCGAGGGGACAGGTGGGCCGGCCGCTCCCACCCTGGGCCCGTCCACCGAGCCCCGAGTGACGTGAGTGGCGGTGGGGCAGCCCCTCTTCTCTGA

CircID chr19:541587|541848
ORF Type ORF5
Protein Length 35
Nucleotide Length 105
Protein Sequence MGREKKPKRNNQRRRGPAQNLREVVCRLRSHGSGP
Nucleotide Sequence ATGGGGAGGGAGAAAAAGCCAAAACGAAACAACCAGAGGAGACGGGGACCAGCACAAAACCTCCGTGAGGTAGTCTGTCGTCTAAGGAGCCACGGGTCCGGCCCT

CircID chr19:541587|541848
ORF Type ORF6
Protein Length 31
Nucleotide Length 96
Protein Sequence MKHVKTQNRHGEGEKAKTKQPEETGTSTKPP
Nucleotide Sequence CTGAAGCACGTGAAAACCCAGAACAGACATGGGGAGGGAGAAAAAGCCAAAACGAAACAACCAGAGGAGACGGGGACCAGCACAAAACCTCCGTGA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites