CircRNA Information

General Information
circRNA Basic Information
CircID chr19:54173643|54173855
Strand +
CircType exon
Host Gene ENSG00000125505.15;
Algorism CIRI2;
Sequence CTCCACTCCTACAAAATCAAAGTATTGTCCAGACAAGAGTCACTGGCCCCTGCTCCAGCTTCTGGGTATCCAGAGAGCACTGCACTTCCCCAAAACGGAAGGGGCCCCTGGGCAGTGGGTTTTGGGCAAATTCCCTTTCTTTGCATCCACAATGTGGGGTCGGAGCTTGGGGGCAGGTCCTGGGAGTGGGAAGCCTCTTCCTTGTGTCTTTCG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:54173643|54173855 hsa-miR-326 0 0 1
chr19:54173643|54173855 hsa-miR-422a 0 0 1
chr19:54173643|54173855 hsa-miR-492 0 1 1
chr19:54173643|54173855 hsa-miR-527 0 0 1
chr19:54173643|54173855 hsa-miR-632 0 0 1
chr19:54173643|54173855 hsa-miR-1231 0 0 1
chr19:54173643|54173855 hsa-miR-296-5p 0 0 1
chr19:54173643|54173855 hsa-miR-188-3p 0 0 1
chr19:54173643|54173855 hsa-miR-324-3p 1 1 1
chr19:54173643|54173855 hsa-miR-330-5p 0 0 1
chr19:54173643|54173855 hsa-miR-519b-3p 0 0 1
chr19:54173643|54173855 hsa-miR-519c-3p 0 0 1
chr19:54173643|54173855 hsa-miR-518a-5p 0 0 1
chr19:54173643|54173855 hsa-miR-1260 0 0 1
chr19:54173643|54173855 hsa-miR-378 0 0 1
chr19:54173643|54173855 hsa-miR-519a 0 0 1
chr19:54173643|54173855 hsa-miR-641 0 1 0
chr19:54173643|54173855 hsa-miR-1913 0 1 0
chr19:54173643|54173855 hsa-miR-4276 0 1 0
chr19:54173643|54173855 hsa-miR-3943 1 1 0
chr19:54173643|54173855 hsa-miR-3135b 0 1 0
chr19:54173643|54173855 hsa-miR-4489 1 0 0
chr19:54173643|54173855 hsa-miR-5190 0 1 0
chr19:54173643|54173855 hsa-miR-5698 1 1 0
chr19:54173643|54173855 hsa-miR-5706 0 1 0
chr19:54173643|54173855 hsa-miR-6860 1 0 0
chr19:54173643|54173855 hsa-miR-12116 1 1 0
chr19:54173643|54173855 hsa-miR-143-5p 1 1 0
chr19:54173643|54173855 hsa-miR-4433b-3p 0 1 0
chr19:54173643|54173855 hsa-miR-18a-3p 1 0 0
chr19:54173643|54173855 hsa-miR-6840-3p 0 1 0
chr19:54173643|54173855 hsa-miR-6836-3p 1 0 0
chr19:54173643|54173855 hsa-miR-6799-5p 1 0 0
chr19:54173643|54173855 hsa-miR-6510-5p 0 1 0
chr19:54173643|54173855 hsa-miR-6721-5p 1 0 0
chr19:54173643|54173855 hsa-miR-6748-5p 0 1 0
chr19:54173643|54173855 hsa-miR-4697-3p 0 1 0
chr19:54173643|54173855 hsa-miR-532-3p 0 1 0
chr19:54173643|54173855 hsa-miR-615-5p 1 0 0
chr19:54173643|54173855 hsa-miR-6830-5p 0 1 0
chr19:54173643|54173855 hsa-miR-4746-3p 1 0 0
chr19:54173643|54173855 hsa-miR-6752-3p 0 1 0
chr19:54173643|54173855 hsa-miR-6890-3p 0 1 0
chr19:54173643|54173855 hsa-miR-18b-3p 1 0 0
chr19:54173643|54173855 hsa-miR-3156-3p 0 1 0
chr19:54173643|54173855 hsa-miR-4763-3p 1 1 0
chr19:54173643|54173855 hsa-miR-6743-5p 1 0 0
chr19:54173643|54173855 hsa-miR-6752-5p 1 0 0
chr19:54173643|54173855 hsa-miR-6813-5p 1 0 0
chr19:54173643|54173855 hsa-miR-6851-5p 1 0 0
chr19:54173643|54173855 hsa-miR-6722-3p 0 1 0
chr19:54173643|54173855 hsa-miR-6780b-5p 1 0 0
chr19:54173643|54173855 hsa-miR-1909-3p 1 1 0
chr19:54173643|54173855 hsa-miR-4725-3p 0 1 0
chr19:54173643|54173855 hsa-miR-939-5p 1 0 0
chr19:54173643|54173855 hsa-miR-1914-3p 1 0 0
chr19:54173643|54173855 hsa-miR-1295b-5p 0 1 0
chr19:54173643|54173855 hsa-miR-6764-5p 0 1 0
chr19:54173643|54173855 hsa-miR-1912-3p 0 1 0
chr19:54173643|54173855 hsa-miR-4782-5p 0 1 0
chr19:54173643|54173855 hsa-miR-548as-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:54173643|54173855
ORF Type ORF1
Protein Length 63
Nucleotide Length 189
Protein Sequence MSRQESLAPAPASGYPESTALPQNGRGPWAVGFGQIPFLCIHNVGSELGGRSWEWEASSLCLS
Nucleotide Sequence TTGTCCAGACAAGAGTCACTGGCCCCTGCTCCAGCTTCTGGGTATCCAGAGAGCACTGCACTTCCCCAAAACGGAAGGGGCCCCTGGGCAGTGGGTTTTGGGCAAATTCCCTTTCTTTGCATCCACAATGTGGGGTCGGAGCTTGGGGGCAGGTCCTGGGAGTGGGAAGCCTCTTCCTTGTGTCTTTCG
CircID chr19:54173643|54173855
ORF Type ORF2
Protein Length 54
Nucleotide Length 162
Protein Sequence MLQLLGIQRALHFPKTEGAPGQWVLGKFPFFASTMWGRSLGAGPGSGKPLPCVF
Nucleotide Sequence CTGCTCCAGCTTCTGGGTATCCAGAGAGCACTGCACTTCCCCAAAACGGAAGGGGCCCCTGGGCAGTGGGTTTTGGGCAAATTCCCTTTCTTTGCATCCACAATGTGGGGTCGGAGCTTGGGGGCAGGTCCTGGGAGTGGGAAGCCTCTTCCTTGTGTCTTT
CircID chr19:54173643|54173855
ORF Type ORF3
Protein Length 35
Nucleotide Length 105
Protein Sequence MGSGFWANSLSLHPQCGVGAWGQVLGVGSLFLVSF
Nucleotide Sequence CTGGGCAGTGGGTTTTGGGCAAATTCCCTTTCTTTGCATCCACAATGTGGGGTCGGAGCTTGGGGGCAGGTCCTGGGAGTGGGAAGCCTCTTCCTTGTGTCTTTC
CircID chr19:54173643|54173855
ORF Type ORF4
Protein Length 29
Nucleotide Length 90
Protein Sequence MPKTHCPGAPSVLGKCSALWIPRSWSRGQ
Nucleotide Sequence TTGCCCAAAACCCACTGCCCAGGGGCCCCTTCCGTTTTGGGGAAGTGCAGTGCTCTCTGGATACCCAGAAGCTGGAGCAGGGGCCAGTGA
CircID chr19:54173643|54173855
ORF Type ORF5
Protein Length 55
Nucleotide Length 168
Protein Sequence MPPSSDPTLWMQRKGICPKPTAQGPLPFWGSAVLSGYPEAGAGASDSCLDNTLIL
Nucleotide Sequence CTGCCCCCAAGCTCCGACCCCACATTGTGGATGCAAAGAAAGGGAATTTGCCCAAAACCCACTGCCCAGGGGCCCCTTCCGTTTTGGGGAAGTGCAGTGCTCTCTGGATACCCAGAAGCTGGAGCAGGGGCCAGTGACTCTTGTCTGGACAATACTTTGATTTTGTAG
CircID chr19:54173643|54173855
ORF Type ORF6
Protein Length 32
Nucleotide Length 99
Protein Sequence MPRGPFRFGEVQCSLDTQKLEQGPVTLVWTIL
Nucleotide Sequence CTGCCCAGGGGCCCCTTCCGTTTTGGGGAAGTGCAGTGCTCTCTGGATACCCAGAAGCTGGAGCAGGGGCCAGTGACTCTTGTCTGGACAATACTTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab