CircRNA Information

General Information
circRNA Basic Information
CircID chr19:54174158|54174373
Strand +
CircType exon
Host Gene ENSG00000125505.15;
Algorism CIRI2;
Sequence CTGAGCTTCCTGACCATCCCGCTGTGCCTGGCTGCCGAGGGCCGGCTGGAGTCAGCCCTGCGGGGGCGGCTGAGCCCAGGGGGCCAGAAGGCCTGGGACTGGGTGCACTGGTTCCTGAAGATGCGCGCCTATGACTACATGTGCATGGGCTTCGTGCTGCTCTCCTTGGCCGACACCCTTCGGTACTGGGCCTCCATCTACTTCTGTATCCACTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:54174158|54174373 hsa-miR-15a-5p 0 0 1
chr19:54174158|54174373 hsa-miR-15a-3p 0 0 1
chr19:54174158|54174373 hsa-miR-148a-5p 0 0 1
chr19:54174158|54174373 hsa-miR-148a-3p 0 0 1
chr19:54174158|54174373 hsa-miR-15b-5p 0 0 1
chr19:54174158|54174373 hsa-miR-15b-3p 0 0 1
chr19:54174158|54174373 hsa-miR-152-5p 0 0 1
chr19:54174158|54174373 hsa-miR-152-3p 0 0 1
chr19:54174158|54174373 hsa-miR-195-5p 0 0 1
chr19:54174158|54174373 hsa-miR-195-3p 0 0 1
chr19:54174158|54174373 hsa-miR-148b-5p 0 0 1
chr19:54174158|54174373 hsa-miR-148b-3p 0 0 1
chr19:54174158|54174373 hsa-miR-345-5p 0 0 1
chr19:54174158|54174373 hsa-miR-345-3p 0 0 1
chr19:54174158|54174373 hsa-miR-424-5p 0 0 1
chr19:54174158|54174373 hsa-miR-424-3p 0 0 1
chr19:54174158|54174373 hsa-miR-497-5p 0 0 1
chr19:54174158|54174373 hsa-miR-497-3p 0 0 1
chr19:54174158|54174373 hsa-miR-650 0 0 1
chr19:54174158|54174373 hsa-miR-766-5p 0 0 1
chr19:54174158|54174373 hsa-miR-766-3p 0 0 1
chr19:54174158|54174373 hsa-miR-873-5p 0 0 1
chr19:54174158|54174373 hsa-miR-873-3p 0 0 1
chr19:54174158|54174373 hsa-miR-1237-5p 0 0 1
chr19:54174158|54174373 hsa-miR-1237-3p 0 0 1
chr19:54174158|54174373 hsa-miR-1825 0 0 1
chr19:54174158|54174373 hsa-miR-770-5p 0 1 1
chr19:54174158|54174373 hsa-miR-508-5p 0 0 1
chr19:54174158|54174373 hsa-miR-331-3p 0 1 1
chr19:54174158|54174373 hsa-miR-16 0 0 1
chr19:54174158|54174373 hsa-miR-24 0 0 1
chr19:54174158|54174373 hsa-miR-298 1 1 0
chr19:54174158|54174373 hsa-miR-3132 1 0 0
chr19:54174158|54174373 hsa-miR-3138 0 1 0
chr19:54174158|54174373 hsa-miR-3141 1 0 0
chr19:54174158|54174373 hsa-miR-3142 0 1 0
chr19:54174158|54174373 hsa-miR-4313 0 1 0
chr19:54174158|54174373 hsa-miR-4269 0 1 0
chr19:54174158|54174373 hsa-miR-4292 0 1 0
chr19:54174158|54174373 hsa-miR-3911 1 0 0
chr19:54174158|54174373 hsa-miR-4428 0 1 0
chr19:54174158|54174373 hsa-miR-4641 0 1 0
chr19:54174158|54174373 hsa-miR-4656 0 1 0
chr19:54174158|54174373 hsa-miR-4673 0 1 0
chr19:54174158|54174373 hsa-miR-4674 0 1 0
chr19:54174158|54174373 hsa-miR-6075 1 0 0
chr19:54174158|54174373 hsa-miR-6081 1 0 0
chr19:54174158|54174373 hsa-miR-6132 0 1 0
chr19:54174158|54174373 hsa-miR-1843 0 1 0
chr19:54174158|54174373 hsa-miR-12114 1 0 0
chr19:54174158|54174373 hsa-miR-12115 1 0 0
chr19:54174158|54174373 hsa-miR-12117 0 1 0
chr19:54174158|54174373 hsa-miR-4665-3p 1 1 0
chr19:54174158|54174373 hsa-miR-6747-5p 1 0 0
chr19:54174158|54174373 hsa-miR-4726-3p 1 0 0
chr19:54174158|54174373 hsa-miR-671-5p 1 0 0
chr19:54174158|54174373 hsa-miR-149-5p 0 1 0
chr19:54174158|54174373 hsa-miR-27a-5p 0 1 0
chr19:54174158|54174373 hsa-miR-6804-5p 0 1 0
chr19:54174158|54174373 hsa-miR-6089 1 0 0
chr19:54174158|54174373 hsa-miR-6880-5p 1 0 0
chr19:54174158|54174373 hsa-miR-4755-3p 0 1 0
chr19:54174158|54174373 hsa-miR-24-3p 0 1 0
chr19:54174158|54174373 hsa-miR-197-5p 1 0 0
chr19:54174158|54174373 hsa-miR-6768-5p 1 0 0
chr19:54174158|54174373 hsa-miR-6772-5p 1 0 0
chr19:54174158|54174373 hsa-miR-6798-5p 1 0 0
chr19:54174158|54174373 hsa-miR-939-3p 1 1 0
chr19:54174158|54174373 hsa-miR-6763-3p 1 0 0
chr19:54174158|54174373 hsa-miR-4640-5p 1 0 0
chr19:54174158|54174373 hsa-miR-3691-5p 1 0 0
chr19:54174158|54174373 hsa-miR-885-3p 1 0 0
chr19:54174158|54174373 hsa-miR-4783-5p 1 0 0
chr19:54174158|54174373 hsa-miR-4743-5p 1 0 0
chr19:54174158|54174373 hsa-miR-6877-5p 1 0 0
chr19:54174158|54174373 hsa-miR-1225-5p 1 0 0
chr19:54174158|54174373 hsa-miR-4632-3p 0 1 0
chr19:54174158|54174373 hsa-miR-4746-5p 1 0 0
chr19:54174158|54174373 hsa-miR-4802-5p 0 1 0
chr19:54174158|54174373 hsa-miR-16-5p 0 1 0
chr19:54174158|54174373 hsa-miR-6778-5p 1 0 0
chr19:54174158|54174373 hsa-miR-3620-5p 1 0 0
chr19:54174158|54174373 hsa-miR-5189-5p 0 1 0
chr19:54174158|54174373 hsa-miR-6836-5p 1 1 0
chr19:54174158|54174373 hsa-miR-6883-5p 1 0 0
chr19:54174158|54174373 hsa-miR-4697-5p 1 0 0
chr19:54174158|54174373 hsa-miR-6511a-5p 1 0 0
chr19:54174158|54174373 hsa-miR-6849-5p 1 1 0
chr19:54174158|54174373 hsa-miR-6791-5p 0 1 0
chr19:54174158|54174373 hsa-miR-3130-5p 0 1 0
chr19:54174158|54174373 hsa-miR-6715b-5p 0 1 0
chr19:54174158|54174373 hsa-miR-3914 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:54174158|54174373
ORF Type ORF1
Protein Length 72
Nucleotide Length 216
Protein Sequence LSFLTIPLCLAAEGRLESALRGRLSPGGQKAWDWVHWFLKMRAYDYMCMGFVLLSLADTLRYWASIYFCIHF
Nucleotide Sequence CTGAGCTTCCTGACCATCCCGCTGTGCCTGGCTGCCGAGGGCCGGCTGGAGTCAGCCCTGCGGGGGCGGCTGAGCCCAGGGGGCCAGAAGGCCTGGGACTGGGTGCACTGGTTCCTGAAGATGCGCGCCTATGACTACATGTGCATGGGCTTCGTGCTGCTCTCCTTGGCCGACACCCTTCGGTACTGGGCCTCCATCTACTTCTGTATCCACTTC
CircID chr19:54174158|54174373
ORF Type ORF2
Protein Length 28
Nucleotide Length 84
Protein Sequence MTTCAWASCCSPWPTPFGTGPPSTSVST
Nucleotide Sequence ATGACTACATGTGCATGGGCTTCGTGCTGCTCTCCTTGGCCGACACCCTTCGGTACTGGGCCTCCATCTACTTCTGTATCCACT
CircID chr19:54174158|54174373
ORF Type ORF3
Protein Length 26
Nucleotide Length 78
Protein Sequence MGSAAPAGLTPAGPRQPGTAGWSGSS
Nucleotide Sequence CTGGGCTCAGCCGCCCCCGCAGGGCTGACTCCAGCCGGCCCTCGGCAGCCAGGCACAGCGGGATGGTCAGGAAGCTCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab