CircRNA Information

General Information
circRNA Basic Information
CircID chr19:55089376|55089521
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence AGGCTGGGGGTTGGTGGTGAGGATTGGGGGGACCAGCTAAGGGTCTACTGGTGAAATCCAAGCAAGAGAGAGGGTGGCTCTGGCTGGGGTGATGGGAGTGAAGATGGTGAGAGATGGTCAGGTTCTGAGAATATTGGAAGATACAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:55089376|55089521 hsa-miR-197-5p 0 0 1
chr19:55089376|55089521 hsa-miR-197-3p 0 0 1
chr19:55089376|55089521 hsa-miR-412-5p 0 0 1
chr19:55089376|55089521 hsa-miR-412-3p 0 0 1
chr19:55089376|55089521 hsa-miR-591 0 0 1
chr19:55089376|55089521 hsa-miR-411-5p 0 0 1
chr19:55089376|55089521 hsa-miR-411-3p 0 0 1
chr19:55089376|55089521 hsa-miR-936 0 0 1
chr19:55089376|55089521 hsa-miR-1226-5p 0 0 1
chr19:55089376|55089521 hsa-miR-1226-3p 0 0 1
chr19:55089376|55089521 hsa-miR-1229-5p 0 0 1
chr19:55089376|55089521 hsa-miR-1229-3p 0 0 1
chr19:55089376|55089521 hsa-miR-1290 0 0 1
chr19:55089376|55089521 hsa-miR-361-3p 0 0 1
chr19:55089376|55089521 hsa-miR-483-3p 0 0 1
chr19:55089376|55089521 hsa-miR-876-5p 0 0 1
chr19:55089376|55089521 hsa-miR-220b 0 0 1
chr19:55089376|55089521 hsa-miR-133b 1 0 0
chr19:55089376|55089521 hsa-miR-940 1 0 0
chr19:55089376|55089521 hsa-miR-1260b 1 0 0
chr19:55089376|55089521 hsa-miR-3183 1 0 0
chr19:55089376|55089521 hsa-miR-6072 1 0 0
chr19:55089376|55089521 hsa-miR-6749-3p 1 0 0
chr19:55089376|55089521 hsa-miR-6879-3p 1 0 0
chr19:55089376|55089521 hsa-miR-205-5p 1 0 0
chr19:55089376|55089521 hsa-miR-766-3p 1 0 0
chr19:55089376|55089521 hsa-miR-150-5p 1 0 0
chr19:55089376|55089521 hsa-miR-218-1-3p 1 0 0
chr19:55089376|55089521 hsa-miR-6842-3p 1 0 0
chr19:55089376|55089521 hsa-miR-770-5p 1 0 0
chr19:55089376|55089521 hsa-miR-6873-3p 1 0 0
chr19:55089376|55089521 hsa-miR-6849-3p 1 0 0
chr19:55089376|55089521 hsa-miR-7110-3p 1 0 0
chr19:55089376|55089521 hsa-miR-6845-3p 1 0 0
chr19:55089376|55089521 hsa-miR-6740-3p 1 0 0
chr19:55089376|55089521 hsa-miR-4713-5p 1 0 0
chr19:55089376|55089521 hsa-miR-532-3p 1 0 0
chr19:55089376|55089521 hsa-miR-6884-3p 1 0 0
chr19:55089376|55089521 hsa-miR-6763-3p 1 0 0
chr19:55089376|55089521 hsa-miR-6803-3p 1 0 0
chr19:55089376|55089521 hsa-miR-3679-3p 1 0 0
chr19:55089376|55089521 hsa-miR-3191-5p 1 0 0
chr19:55089376|55089521 hsa-miR-7111-3p 1 0 0
chr19:55089376|55089521 hsa-miR-339-5p 1 0 0
chr19:55089376|55089521 hsa-miR-3190-5p 1 0 0
chr19:55089376|55089521 hsa-miR-1236-3p 1 0 0
chr19:55089376|55089521 hsa-miR-6785-3p 1 0 0
chr19:55089376|55089521 hsa-miR-6813-3p 1 0 0
chr19:55089376|55089521 hsa-miR-4758-3p 1 0 0
chr19:55089376|55089521 hsa-miR-508-5p 1 0 0
chr19:55089376|55089521 hsa-miR-6887-3p 1 0 0
chr19:55089376|55089521 hsa-miR-6793-3p 1 0 0
chr19:55089376|55089521 hsa-miR-1910-5p 1 0 0
chr19:55089376|55089521 hsa-miR-6741-3p 1 0 0
chr19:55089376|55089521 hsa-miR-6895-3p 1 0 0
chr19:55089376|55089521 hsa-miR-4632-3p 1 0 0
chr19:55089376|55089521 hsa-miR-6865-3p 1 0 0
chr19:55089376|55089521 hsa-miR-328-3p 1 0 0
chr19:55089376|55089521 hsa-miR-6777-3p 1 0 0
chr19:55089376|55089521 hsa-miR-6880-3p 1 0 0
chr19:55089376|55089521 hsa-miR-6883-3p 1 0 0
chr19:55089376|55089521 hsa-miR-4750-3p 1 0 0
chr19:55089376|55089521 hsa-miR-6515-3p 1 0 0
chr19:55089376|55089521 hsa-miR-6729-3p 1 0 0
chr19:55089376|55089521 hsa-miR-6759-3p 1 0 0
chr19:55089376|55089521 hsa-miR-7158-5p 1 0 0
chr19:55089376|55089521 hsa-miR-6502-3p 1 0 0
chr19:55089376|55089521 hsa-miR-133a-3p 1 0 0
chr19:55089376|55089521 hsa-miR-320a-5p 1 0 0
chr19:55089376|55089521 hsa-miR-4685-3p 1 0 0
chr19:55089376|55089521 hsa-miR-6754-3p 1 0 0
chr19:55089376|55089521 hsa-miR-6511a-3p 1 0 0
chr19:55089376|55089521 hsa-miR-6784-3p 1 0 0
chr19:55089376|55089521 hsa-miR-6862-3p 1 0 0
chr19:55089376|55089521 hsa-miR-10401-3p 1 0 0
chr19:55089376|55089521 hsa-miR-11181-5p 1 0 0
chr19:55089376|55089521 hsa-miR-3130-5p 1 0 0
chr19:55089376|55089521 hsa-miR-3622a-3p 1 0 0
chr19:55089376|55089521 hsa-miR-4723-3p 1 0 0
chr19:55089376|55089521 hsa-miR-6511b-3p 1 0 0
chr19:55089376|55089521 hsa-miR-6891-3p 1 0 0
chr19:55089376|55089521 hsa-miR-7114-3p 1 0 0
chr19:55089376|55089521 hsa-miR-4701-5p 1 0 0
chr19:55089376|55089521 hsa-miR-6848-3p 1 0 0
chr19:55089376|55089521 hsa-miR-6827-3p 1 0 0
chr19:55089376|55089521 hsa-miR-4690-3p 1 0 0
chr19:55089376|55089521 hsa-miR-5571-5p 1 0 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:55089376|55089521
ORF Type ORF1
Protein Length 33
Nucleotide Length 102
Protein Sequence LYLPIFSEPDHLSPSSLPSPQPEPPSLLLGFHQ
Nucleotide Sequence CTGTATCTTCCAATATTCTCAGAACCTGACCATCTCTCACCATCTTCACTCCCATCACCCCAGCCAGAGCCACCCTCTCTCTTGCTTGGATTTCACCAGTAG
CircID chr19:55089376|55089521
ORF Type ORF2
Protein Length 40
Nucleotide Length 120
Protein Sequence MTISHHLHSHHPSQSHPLSCLDFTSRPLAGPPNPHHQPPA
Nucleotide Sequence CTGACCATCTCTCACCATCTTCACTCCCATCACCCCAGCCAGAGCCACCCTCTCTCTTGCTTGGATTTCACCAGTAGACCCTTAGCTGGTCCCCCCAATCCTCACCACCAACCCCCAGCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab