CircRNA Information

General Information
circRNA Basic Information
CircID chr19:55202056|55205592
Strand -
CircType exon
Host Gene ENSG00000080031.8;
Algorism CIRI2;
Sequence CTGTGGTGGCATTTCGAGTCTCCCGGGAGCTGTTGATTCCATTCTTCCCCACCCACACGGAAAACACATACAAACACCCGGGTTCAAGTCTATCCACGGTGATGTTGGTGTGTGCTGTGCTTCGAGTCCCTGCTCTGCCACCATCTCCAGTGTACTCAACCCCGTAGGTGGAGTTCTGTGGGTCTGGGCCATCGGGGACCTCCCAGGTCAGGGCGATGGAGCTGTTGGTCTGAGCCTCCACTGTCAGGTTTCTCACTGGGTTGGGAGCTGTGGTGGCATTTCGAGTCTCCCGGGAGCTGTTGATTCCATTCTTTCCCACCCACATGGAAAACGCATACAAACACCCGGGTTCAAGTCCATCCACGGTGATGTTAGTGTGTGCTGTGCTTCGAGTCCCTGCTCTGCCACCATCTCCAGTGTACTCAACCCCGTAGGTGGAGTTCTGTGGGTCTGGGCCGTCGGGGACCTCCCAGGTCAGGGCGATGGAGCTGTTGGTCTGAGCCTCCACTCTCAGGTTCCTCACTGGGTTGGGAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:55202056|55205592 hsa-miR-150-5p 0 0 1
chr19:55202056|55205592 hsa-miR-150-3p 0 0 1
chr19:55202056|55205592 hsa-miR-186-5p 0 0 1
chr19:55202056|55205592 hsa-miR-186-3p 0 0 1
chr19:55202056|55205592 hsa-miR-539-5p 0 0 1
chr19:55202056|55205592 hsa-miR-539-3p 0 0 1
chr19:55202056|55205592 hsa-miR-567 -1 0 1
chr19:55202056|55205592 hsa-miR-587 -1 0 1
chr19:55202056|55205592 hsa-miR-603 0 1 1
chr19:55202056|55205592 hsa-miR-609 -1 0 1
chr19:55202056|55205592 hsa-miR-620 -1 0 1
chr19:55202056|55205592 hsa-miR-631 -15 1 1
chr19:55202056|55205592 hsa-miR-650 -12 0 1
chr19:55202056|55205592 hsa-miR-421 -5 1 1
chr19:55202056|55205592 hsa-miR-297 -8 1 1
chr19:55202056|55205592 hsa-miR-1293 -17 0 1
chr19:55202056|55205592 hsa-miR-1249-5p 0 0 1
chr19:55202056|55205592 hsa-miR-1249-3p 0 0 1
chr19:55202056|55205592 hsa-miR-1270 -11 1 1
chr19:55202056|55205592 hsa-miR-491-5p -14 0 1
chr19:55202056|55205592 hsa-miR-299-3p -9 1 1
chr19:55202056|55205592 hsa-miR-140-3p -1 0 1
chr19:55202056|55205592 hsa-miR-362-3p -1 0 1
chr19:55202056|55205592 hsa-miR-24 0 0 1
chr19:55202056|55205592 hsa-miR-329 0 0 1
chr19:55202056|55205592 hsa-miR-499-3p 0 0 1
chr19:55202056|55205592 hsa-miR-1183 0 1 0
chr19:55202056|55205592 hsa-miR-3132 -19 1 0
chr19:55202056|55205592 hsa-miR-3149 -5 1 0
chr19:55202056|55205592 hsa-miR-1193 -9 1 0
chr19:55202056|55205592 hsa-miR-3176 -9 1 0
chr19:55202056|55205592 hsa-miR-4271 -14 1 0
chr19:55202056|55205592 hsa-miR-4330 -10 1 0
chr19:55202056|55205592 hsa-miR-3661 -12 1 0
chr19:55202056|55205592 hsa-miR-3689c -3 1 0
chr19:55202056|55205592 hsa-miR-4526 -12 1 0
chr19:55202056|55205592 hsa-miR-4635 -5 1 0
chr19:55202056|55205592 hsa-miR-4647 -8 1 0
chr19:55202056|55205592 hsa-miR-4730 -14 1 0
chr19:55202056|55205592 hsa-miR-6075 -14 1 0
chr19:55202056|55205592 hsa-miR-6079 -19 1 0
chr19:55202056|55205592 hsa-miR-6085 -11 1 0
chr19:55202056|55205592 hsa-miR-6132 -15 1 0
chr19:55202056|55205592 hsa-miR-8485 -4 1 0
chr19:55202056|55205592 hsa-miR-12115 -17 1 0
chr19:55202056|55205592 hsa-miR-211-3p -8 1 0
chr19:55202056|55205592 hsa-miR-197-3p -8 1 0
chr19:55202056|55205592 hsa-miR-92a-2-5p -12 1 0
chr19:55202056|55205592 hsa-miR-1247-3p -9 1 0
chr19:55202056|55205592 hsa-miR-6825-5p -26 1 0
chr19:55202056|55205592 hsa-miR-6857-5p -14 1 0
chr19:55202056|55205592 hsa-miR-4708-5p -15 1 0
chr19:55202056|55205592 hsa-miR-6799-5p -15 1 0
chr19:55202056|55205592 hsa-miR-6510-5p -10 1 0
chr19:55202056|55205592 hsa-miR-7851-3p -13 1 0
chr19:55202056|55205592 hsa-miR-3192-5p -9 1 0
chr19:55202056|55205592 hsa-miR-6880-5p -16 1 0
chr19:55202056|55205592 hsa-miR-6746-5p -12 1 0
chr19:55202056|55205592 hsa-miR-24-3p -11 1 0
chr19:55202056|55205592 hsa-miR-3928-3p -13 1 0
chr19:55202056|55205592 hsa-miR-6759-5p -16 1 0
chr19:55202056|55205592 hsa-miR-6721-5p -16 1 0
chr19:55202056|55205592 hsa-miR-874-3p -17 1 0
chr19:55202056|55205592 hsa-miR-6726-3p -8 1 0
chr19:55202056|55205592 hsa-miR-6748-5p -24 1 0
chr19:55202056|55205592 hsa-miR-2467-5p -14 1 0
chr19:55202056|55205592 hsa-miR-6760-5p -10 1 0
chr19:55202056|55205592 hsa-miR-6874-5p -12 1 0
chr19:55202056|55205592 hsa-miR-6888-5p -11 1 0
chr19:55202056|55205592 hsa-miR-30b-3p -2 1 0
chr19:55202056|55205592 hsa-miR-3934-3p -10 1 0
chr19:55202056|55205592 hsa-miR-615-5p -22 1 0
chr19:55202056|55205592 hsa-miR-4693-3p -8 1 0
chr19:55202056|55205592 hsa-miR-4715-3p -3 1 0
chr19:55202056|55205592 hsa-miR-3691-5p -11 1 0
chr19:55202056|55205592 hsa-miR-4732-5p -23 1 0
chr19:55202056|55205592 hsa-miR-6736-3p -13 1 0
chr19:55202056|55205592 hsa-miR-585-5p -5 1 0
chr19:55202056|55205592 hsa-miR-490-3p -9 1 0
chr19:55202056|55205592 hsa-miR-6785-3p -14 1 0
chr19:55202056|55205592 hsa-miR-4732-3p -7 1 0
chr19:55202056|55205592 hsa-miR-1180-5p -8 1 0
chr19:55202056|55205592 hsa-miR-6868-5p -12 1 0
chr19:55202056|55205592 hsa-miR-6501-3p -12 1 0
chr19:55202056|55205592 hsa-miR-1296-3p -9 1 0
chr19:55202056|55205592 hsa-miR-888-3p -7 1 0
chr19:55202056|55205592 hsa-miR-4802-5p 0 1 0
chr19:55202056|55205592 hsa-miR-4709-5p -10 1 0
chr19:55202056|55205592 hsa-miR-4797-5p 3 1 0
chr19:55202056|55205592 hsa-miR-1207-5p -16 1 0
chr19:55202056|55205592 hsa-miR-1273h-5p -9 1 0
chr19:55202056|55205592 hsa-miR-3689b-3p -3 1 0
chr19:55202056|55205592 hsa-miR-4763-3p -18 1 0
chr19:55202056|55205592 hsa-miR-6769b-5p -25 1 0
chr19:55202056|55205592 hsa-miR-6865-5p -30 1 0
chr19:55202056|55205592 hsa-miR-6756-5p -23 1 0
chr19:55202056|55205592 hsa-miR-6851-5p -17 1 0
chr19:55202056|55205592 hsa-miR-6779-5p -14 1 0
chr19:55202056|55205592 hsa-miR-6780a-5p -18 1 0
chr19:55202056|55205592 hsa-miR-6879-5p -13 1 0
chr19:55202056|55205592 hsa-miR-1909-3p -20 1 0
chr19:55202056|55205592 hsa-miR-3689a-3p -4 1 0
chr19:55202056|55205592 hsa-miR-4749-5p -19 1 0
chr19:55202056|55205592 hsa-miR-365b-5p -10 1 0
chr19:55202056|55205592 hsa-miR-6739-5p -6 1 0
chr19:55202056|55205592 hsa-miR-4700-5p -10 1 0
chr19:55202056|55205592 hsa-miR-6766-5p -16 1 0
chr19:55202056|55205592 hsa-miR-7114-3p -14 1 0
chr19:55202056|55205592 hsa-miR-4690-3p -15 1 0
chr19:55202056|55205592 hsa-miR-4482-5p -9 1 0
chr19:55202056|55205592 hsa-miR-99b-5p 0 1 0
chr19:55202056|55205592 hsa-miR-4781-5p -12 1 0
chr19:55202056|55205592 hsa-miR-337-5p -8 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:55202056|55205592
ORF Type ORF1
Protein Length 62
Nucleotide Length 189
Protein Sequence MCFESLLCHHLQCTQPRRWSSVGLGHRGPPRSGRWSCWSEPPLSGFSLGWELWWHFESPGSC
Nucleotide Sequence CTGTGCTTCGAGTCCCTGCTCTGCCACCATCTCCAGTGTACTCAACCCCGTAGGTGGAGTTCTGTGGGTCTGGGCCATCGGGGACCTCCCAGGTCAGGGCGATGGAGCTGTTGGTCTGAGCCTCCACTGTCAGGTTTCTCACTGGGTTGGGAGCTGTGGTGGCATTTCGAGTCTCCCGGGAGCTGTTGA
CircID chr19:55202056|55205592
ORF Type ORF2
Protein Length 51
Nucleotide Length 153
Protein Sequence MCFESLLCHHLQCTQPRRWSSVGLGRRGPPRSGRWSCWSEPPLSGSSLGWE
Nucleotide Sequence CTGTGCTTCGAGTCCCTGCTCTGCCACCATCTCCAGTGTACTCAACCCCGTAGGTGGAGTTCTGTGGGTCTGGGCCGTCGGGGACCTCCCAGGTCAGGGCGATGGAGCTGTTGGTCTGAGCCTCCACTCTCAGGTTCCTCACTGGGTTGGGAG
CircID chr19:55202056|55205592
ORF Type ORF3
Protein Length 119
Nucleotide Length 357
Protein Sequence MWVWAIGDLPGQGDGAVGLSLHCQVSHWVGSCGGISSLPGAVDSILSHPHGKRIQTPGFKSIHGDVSVCCASSPCSATISSVLNPVGGVLWVWAVGDLPGQGDGAVGLSLHSQVPHWVG
Nucleotide Sequence CTGTGGGTCTGGGCCATCGGGGACCTCCCAGGTCAGGGCGATGGAGCTGTTGGTCTGAGCCTCCACTGTCAGGTTTCTCACTGGGTTGGGAGCTGTGGTGGCATTTCGAGTCTCCCGGGAGCTGTTGATTCCATTCTTTCCCACCCACATGGAAAACGCATACAAACACCCGGGTTCAAGTCCATCCACGGTGATGTTAGTGTGTGCTGTGCTTCGAGTCCCTGCTCTGCCACCATCTCCAGTGTACTCAACCCCGTAGGTGGAGTTCTGTGGGTCTGGGCCGTCGGGGACCTCCCAGGTCAGGGCGATGGAGCTGTTGGTCTGAGCCTCCACTCTCAGGTTCCTCACTGGGTTGGG
CircID chr19:55202056|55205592
ORF Type ORF4
Protein Length 45
Nucleotide Length 138
Protein Sequence MLIPFFPTHTENTYKHPGSSLSTVMLVCAVLRVPALPPSPVYSTP
Nucleotide Sequence CTGTTGATTCCATTCTTCCCCACCCACACGGAAAACACATACAAACACCCGGGTTCAAGTCTATCCACGGTGATGTTGGTGTGTGCTGTGCTTCGAGTCCCTGCTCTGCCACCATCTCCAGTGTACTCAACCCCGTAG
CircID chr19:55202056|55205592
ORF Type ORF5
Protein Length 57
Nucleotide Length 174
Protein Sequence MGAVVAFRVSRELLIPFFPTHMENAYKHPGSSPSTVMLVCAVLRVPALPPSPVYSTP
Nucleotide Sequence TTGGGAGCTGTGGTGGCATTTCGAGTCTCCCGGGAGCTGTTGATTCCATTCTTTCCCACCCACATGGAAAACGCATACAAACACCCGGGTTCAAGTCCATCCACGGTGATGTTAGTGTGTGCTGTGCTTCGAGTCCCTGCTCTGCCACCATCTCCAGTGTACTCAACCCCGTAG
CircID chr19:55202056|55205592
ORF Type ORF6
Protein Length 57
Nucleotide Length 174
Protein Sequence MSTLEMVAEQGLEAQHTLTSPWMDLNPGVCMRFPCGWERMESTAPGRLEMPPQLPTQ
Nucleotide Sequence TTGAGTACACTGGAGATGGTGGCAGAGCAGGGACTCGAAGCACAGCACACACTAACATCACCGTGGATGGACTTGAACCCGGGTGTTTGTATGCGTTTTCCATGTGGGTGGGAAAGAATGGAATCAACAGCTCCCGGGAGACTCGAAATGCCACCACAGCTCCCAACCCAGTGA
CircID chr19:55202056|55205592
ORF Type ORF7
Protein Length 64
Nucleotide Length 192
Protein Sequence MAQTHRTPPTGLSTLEMVAEQGLEAQHTPTSPWIDLNPGVCMCFPCGWGRMESTAPGRLEMPPQ
Nucleotide Sequence ATGGCCCAGACCCACAGAACTCCACCTACGGGGTTGAGTACACTGGAGATGGTGGCAGAGCAGGGACTCGAAGCACAGCACACACCAACATCACCGTGGATAGACTTGAACCCGGGTGTTTGTATGTGTTTTCCGTGTGGGTGGGGAAGAATGGAATCAACAGCTCCCGGGAGACTCGAAATGCCACCACAG
CircID chr19:55202056|55205592
ORF Type ORF8
Protein Length 171
Nucleotide Length 513
Protein Sequence MRVEAQTNSSIALTWEVPDGPDPQNSTYGVEYTGDGGRAGTRSTAHTNITVDGLEPGCLYAFSMWVGKNGINSSRETRNATTAPNPVRNLTVEAQTNSSIALTWEVPDGPDPQNSTYGVEYTGDGGRAGTRSTAHTNITVDRLEPGCLYVFSVWVGKNGINSSRETRNATT
Nucleotide Sequence CTGAGAGTGGAGGCTCAGACCAACAGCTCCATCGCCCTGACCTGGGAGGTCCCCGACGGCCCAGACCCACAGAACTCCACCTACGGGGTTGAGTACACTGGAGATGGTGGCAGAGCAGGGACTCGAAGCACAGCACACACTAACATCACCGTGGATGGACTTGAACCCGGGTGTTTGTATGCGTTTTCCATGTGGGTGGGAAAGAATGGAATCAACAGCTCCCGGGAGACTCGAAATGCCACCACAGCTCCCAACCCAGTGAGAAACCTGACAGTGGAGGCTCAGACCAACAGCTCCATCGCCCTGACCTGGGAGGTCCCCGATGGCCCAGACCCACAGAACTCCACCTACGGGGTTGAGTACACTGGAGATGGTGGCAGAGCAGGGACTCGAAGCACAGCACACACCAACATCACCGTGGATAGACTTGAACCCGGGTGTTTGTATGTGTTTTCCGTGTGGGTGGGGAAGAATGGAATCAACAGCTCCCGGGAGACTCGAAATGCCACCACA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab