CircRNA Information

General Information
circRNA Basic Information
CircID chr19:55205326|55205592
Strand -
CircType exon
Host Gene ENSG00000080031.8;
Algorism CIRI2;
Sequence CTGTGGTGGCATTTCGAGTCTCCCGGGAGCTGTTGATTCCATTCTTTCCCACCCACATGGAAAACGCATACAAACACCCGGGTTCAAGTCCATCCACGGTGATGTTAGTGTGTGCTGTGCTTCGAGTCCCTGCTCTGCCACCATCTCCAGTGTACTCAACCCCGTAGGTGGAGTTCTGTGGGTCTGGGCCGTCGGGGACCTCCCAGGTCAGGGCGATGGAGCTGTTGGTCTGAGCCTCCACTCTCAGGTTCCTCACTGGGTTGGGAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:55205326|55205592 hsa-miR-150-5p 0 0 1
chr19:55205326|55205592 hsa-miR-150-3p 0 0 1
chr19:55205326|55205592 hsa-miR-186-5p 0 0 1
chr19:55205326|55205592 hsa-miR-186-3p 0 0 1
chr19:55205326|55205592 hsa-miR-587 -7 0 1
chr19:55205326|55205592 hsa-miR-603 0 1 1
chr19:55205326|55205592 hsa-miR-609 -1 0 1
chr19:55205326|55205592 hsa-miR-620 0 0 1
chr19:55205326|55205592 hsa-miR-631 -13 0 1
chr19:55205326|55205592 hsa-miR-650 -12 0 1
chr19:55205326|55205592 hsa-miR-421 -2 0 1
chr19:55205326|55205592 hsa-miR-297 -9 0 1
chr19:55205326|55205592 hsa-miR-1293 -16 0 1
chr19:55205326|55205592 hsa-miR-1249-5p 0 0 1
chr19:55205326|55205592 hsa-miR-1249-3p 0 0 1
chr19:55205326|55205592 hsa-miR-1270 -10 1 1
chr19:55205326|55205592 hsa-miR-299-3p -12 1 1
chr19:55205326|55205592 hsa-miR-140-3p 0 0 1
chr19:55205326|55205592 hsa-miR-24 0 0 1
chr19:55205326|55205592 hsa-miR-499-3p 0 0 1
chr19:55205326|55205592 hsa-miR-1183 0 1 0
chr19:55205326|55205592 hsa-miR-3132 1 0 0
chr19:55205326|55205592 hsa-miR-4298 1 0 0
chr19:55205326|55205592 hsa-miR-4265 1 0 0
chr19:55205326|55205592 hsa-miR-3661 -12 1 0
chr19:55205326|55205592 hsa-miR-4451 1 0 0
chr19:55205326|55205592 hsa-miR-4505 1 0 0
chr19:55205326|55205592 hsa-miR-4651 1 0 0
chr19:55205326|55205592 hsa-miR-6075 -13 1 0
chr19:55205326|55205592 hsa-miR-6079 -17 1 0
chr19:55205326|55205592 hsa-miR-8089 1 0 0
chr19:55205326|55205592 hsa-miR-10226 1 0 0
chr19:55205326|55205592 hsa-miR-12115 -14 1 0
chr19:55205326|55205592 hsa-miR-1247-3p -4 1 0
chr19:55205326|55205592 hsa-miR-7851-3p -13 1 0
chr19:55205326|55205592 hsa-miR-6089 1 0 0
chr19:55205326|55205592 hsa-miR-3192-5p -5 1 0
chr19:55205326|55205592 hsa-miR-6890-5p 1 0 0
chr19:55205326|55205592 hsa-miR-24-3p -11 1 0
chr19:55205326|55205592 hsa-miR-6820-5p 1 0 0
chr19:55205326|55205592 hsa-miR-3928-3p -13 1 0
chr19:55205326|55205592 hsa-miR-6759-5p -17 1 0
chr19:55205326|55205592 hsa-miR-197-5p 1 0 0
chr19:55205326|55205592 hsa-miR-6748-5p -26 1 0
chr19:55205326|55205592 hsa-miR-6793-5p 1 0 0
chr19:55205326|55205592 hsa-miR-2467-3p 1 0 0
chr19:55205326|55205592 hsa-miR-4793-3p 1 0 0
chr19:55205326|55205592 hsa-miR-615-5p -17 1 0
chr19:55205326|55205592 hsa-miR-4693-3p -8 1 0
chr19:55205326|55205592 hsa-miR-3691-5p -11 1 0
chr19:55205326|55205592 hsa-miR-4732-5p -22 1 0
chr19:55205326|55205592 hsa-miR-149-3p 1 0 0
chr19:55205326|55205592 hsa-miR-6785-3p -7 1 0
chr19:55205326|55205592 hsa-miR-4732-3p -5 1 0
chr19:55205326|55205592 hsa-miR-3940-3p 1 0 0
chr19:55205326|55205592 hsa-miR-888-3p -7 1 0
chr19:55205326|55205592 hsa-miR-4802-5p 0 1 0
chr19:55205326|55205592 hsa-miR-1207-5p 1 0 0
chr19:55205326|55205592 hsa-miR-1273h-5p -8 1 0
chr19:55205326|55205592 hsa-miR-4763-3p 1 0 0
chr19:55205326|55205592 hsa-miR-6769b-5p -24 1 0
chr19:55205326|55205592 hsa-miR-6865-5p -30 1 0
chr19:55205326|55205592 hsa-miR-6756-5p -23 1 0
chr19:55205326|55205592 hsa-miR-6803-5p 1 0 0
chr19:55205326|55205592 hsa-miR-6851-5p 1 0 0
chr19:55205326|55205592 hsa-miR-10401-5p 1 0 0
chr19:55205326|55205592 hsa-miR-6780a-5p 1 0 0
chr19:55205326|55205592 hsa-miR-6808-5p 1 0 0
chr19:55205326|55205592 hsa-miR-1237-5p 1 0 0
chr19:55205326|55205592 hsa-miR-4725-3p 1 0 0
chr19:55205326|55205592 hsa-miR-4758-5p 1 0 0
chr19:55205326|55205592 hsa-miR-6731-5p 1 0 0
chr19:55205326|55205592 hsa-miR-6739-5p -8 1 0
chr19:55205326|55205592 hsa-miR-6766-5p -16 1 0
chr19:55205326|55205592 hsa-miR-10392-3p 1 0 0
chr19:55205326|55205592 hsa-miR-7114-3p -13 1 0
chr19:55205326|55205592 hsa-miR-4690-3p 1 0 0
chr19:55205326|55205592 hsa-miR-4482-5p -5 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:55205326|55205592
ORF Type ORF1
Protein Length 51
Nucleotide Length 153
Protein Sequence MCFESLLCHHLQCTQPRRWSSVGLGRRGPPRSGRWSCWSEPPLSGSSLGWE
Nucleotide Sequence CTGTGCTTCGAGTCCCTGCTCTGCCACCATCTCCAGTGTACTCAACCCCGTAGGTGGAGTTCTGTGGGTCTGGGCCGTCGGGGACCTCCCAGGTCAGGGCGATGGAGCTGTTGGTCTGAGCCTCCACTCTCAGGTTCCTCACTGGGTTGGGAG
CircID chr19:55205326|55205592
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MWVWAVGDLPGQGDGAVGLSLHSQVPHWVG
Nucleotide Sequence CTGTGGGTCTGGGCCGTCGGGGACCTCCCAGGTCAGGGCGATGGAGCTGTTGGTCTGAGCCTCCACTCTCAGGTTCCTCACTGGGTTGGG
CircID chr19:55205326|55205592
ORF Type ORF3
Protein Length 45
Nucleotide Length 138
Protein Sequence MLIPFFPTHMENAYKHPGSSPSTVMLVCAVLRVPALPPSPVYSTP
Nucleotide Sequence CTGTTGATTCCATTCTTTCCCACCCACATGGAAAACGCATACAAACACCCGGGTTCAAGTCCATCCACGGTGATGTTAGTGTGTGCTGTGCTTCGAGTCCCTGCTCTGCCACCATCTCCAGTGTACTCAACCCCGTAG
CircID chr19:55205326|55205592
ORF Type ORF4
Protein Length 53
Nucleotide Length 159
Protein Sequence MSTLEMVAEQGLEAQHTLTSPWMDLNPGVCMRFPCGWERMESTAPGRLEMPPQ
Nucleotide Sequence TTGAGTACACTGGAGATGGTGGCAGAGCAGGGACTCGAAGCACAGCACACACTAACATCACCGTGGATGGACTTGAACCCGGGTGTTTGTATGCGTTTTCCATGTGGGTGGGAAAGAATGGAATCAACAGCTCCCGGGAGACTCGAAATGCCACCACAG
CircID chr19:55205326|55205592
ORF Type ORF5
Protein Length 82
Nucleotide Length 246
Protein Sequence MRVEAQTNSSIALTWEVPDGPDPQNSTYGVEYTGDGGRAGTRSTAHTNITVDGLEPGCLYAFSMWVGKNGINSSRETRNATT
Nucleotide Sequence CTGAGAGTGGAGGCTCAGACCAACAGCTCCATCGCCCTGACCTGGGAGGTCCCCGACGGCCCAGACCCACAGAACTCCACCTACGGGGTTGAGTACACTGGAGATGGTGGCAGAGCAGGGACTCGAAGCACAGCACACACTAACATCACCGTGGATGGACTTGAACCCGGGTGTTTGTATGCGTTTTCCATGTGGGTGGGAAAGAATGGAATCAACAGCTCCCGGGAGACTCGAAATGCCACCACA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab