CircRNA Information

General Information
circRNA Basic Information
CircID chr19:55230020|55230244
Strand -
CircType exon
Host Gene ENSG00000276570.1;
Algorism CIRI2;
Sequence CCTCTGGCACCCCCACCCACGCTGGGCCGTCCCCCATGGTGGACCTGAGCTAAAAGGCCGGGTGTGGGCGTGGCCGTCTGCGCTGCAGCGTGGGACAGCTGGGCACGTGGGTGGCAACCTTGGGACCCCTAACACCAGCTCCCGCTGGGACGGAACAGGGAAGGCTGTGCTTTGGAGCCGCCAGCCCAGTTCGGTGTCCTCACTCTCTCTCGCTCTCCTCCCTCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:55230020|55230244 hsa-miR-625-5p 0 0 1
chr19:55230020|55230244 hsa-miR-625-3p 0 0 1
chr19:55230020|55230244 hsa-miR-662 0 1 1
chr19:55230020|55230244 hsa-miR-765 1 1 1
chr19:55230020|55230244 hsa-miR-920 0 1 1
chr19:55230020|55230244 hsa-miR-1293 0 0 1
chr19:55230020|55230244 hsa-miR-1258 0 0 1
chr19:55230020|55230244 hsa-miR-1275 1 0 1
chr19:55230020|55230244 hsa-miR-1321 1 1 1
chr19:55230020|55230244 hsa-miR-1197 0 0 1
chr19:55230020|55230244 hsa-miR-1224-5p 0 1 1
chr19:55230020|55230244 hsa-miR-615-5p 1 1 1
chr19:55230020|55230244 hsa-miR-941 0 1 1
chr19:55230020|55230244 hsa-miR-339-5p 0 0 1
chr19:55230020|55230244 hsa-miR-1184 0 1 1
chr19:55230020|55230244 hsa-miR-330-3p 0 1 1
chr19:55230020|55230244 hsa-miR-342-5p 0 0 1
chr19:55230020|55230244 hsa-miR-1274a 0 0 1
chr19:55230020|55230244 hsa-miR-1274b 0 0 1
chr19:55230020|55230244 hsa-miR-138 0 0 1
chr19:55230020|55230244 hsa-miR-658 1 0 0
chr19:55230020|55230244 hsa-miR-762 0 1 0
chr19:55230020|55230244 hsa-miR-760 1 0 0
chr19:55230020|55230244 hsa-miR-921 0 1 0
chr19:55230020|55230244 hsa-miR-3132 1 0 0
chr19:55230020|55230244 hsa-miR-3153 1 0 0
chr19:55230020|55230244 hsa-miR-3175 1 0 0
chr19:55230020|55230244 hsa-miR-4300 0 1 0
chr19:55230020|55230244 hsa-miR-1268b 1 0 0
chr19:55230020|55230244 hsa-miR-4441 1 0 0
chr19:55230020|55230244 hsa-miR-4451 1 0 0
chr19:55230020|55230244 hsa-miR-4458 1 0 0
chr19:55230020|55230244 hsa-miR-4498 0 1 0
chr19:55230020|55230244 hsa-miR-4510 1 1 0
chr19:55230020|55230244 hsa-miR-4525 1 0 0
chr19:55230020|55230244 hsa-miR-4533 1 0 0
chr19:55230020|55230244 hsa-miR-4534 1 0 0
chr19:55230020|55230244 hsa-miR-4539 0 1 0
chr19:55230020|55230244 hsa-miR-3973 0 1 0
chr19:55230020|55230244 hsa-miR-4689 1 0 0
chr19:55230020|55230244 hsa-miR-4706 1 0 0
chr19:55230020|55230244 hsa-miR-4739 1 1 0
chr19:55230020|55230244 hsa-miR-4784 1 0 0
chr19:55230020|55230244 hsa-miR-5192 1 0 0
chr19:55230020|55230244 hsa-miR-5698 1 0 0
chr19:55230020|55230244 hsa-miR-6090 1 0 0
chr19:55230020|55230244 hsa-miR-6127 1 1 0
chr19:55230020|55230244 hsa-miR-6129 1 1 0
chr19:55230020|55230244 hsa-miR-6130 1 1 0
chr19:55230020|55230244 hsa-miR-6133 1 1 0
chr19:55230020|55230244 hsa-miR-7978 0 1 0
chr19:55230020|55230244 hsa-miR-8085 1 0 0
chr19:55230020|55230244 hsa-miR-12115 1 0 0
chr19:55230020|55230244 hsa-miR-12118 1 0 0
chr19:55230020|55230244 hsa-miR-138-5p 0 1 0
chr19:55230020|55230244 hsa-miR-6734-5p 1 0 0
chr19:55230020|55230244 hsa-miR-3150a-3p 1 0 0
chr19:55230020|55230244 hsa-miR-7106-5p 1 1 0
chr19:55230020|55230244 hsa-miR-6825-5p 1 0 0
chr19:55230020|55230244 hsa-miR-6894-5p 1 0 0
chr19:55230020|55230244 hsa-miR-6822-3p 1 1 0
chr19:55230020|55230244 hsa-miR-25-5p 1 0 0
chr19:55230020|55230244 hsa-miR-6854-5p 0 1 0
chr19:55230020|55230244 hsa-miR-6799-5p 1 0 0
chr19:55230020|55230244 hsa-miR-766-5p 1 0 0
chr19:55230020|55230244 hsa-miR-5187-5p 1 0 0
chr19:55230020|55230244 hsa-miR-4768-3p 0 1 0
chr19:55230020|55230244 hsa-miR-6873-5p 0 1 0
chr19:55230020|55230244 hsa-miR-6880-5p 1 0 0
chr19:55230020|55230244 hsa-miR-7847-3p 1 0 0
chr19:55230020|55230244 hsa-miR-6746-5p 1 0 0
chr19:55230020|55230244 hsa-miR-197-5p 1 0 0
chr19:55230020|55230244 hsa-miR-3180-3p 1 0 0
chr19:55230020|55230244 hsa-miR-6748-5p 0 1 0
chr19:55230020|55230244 hsa-miR-656-5p 0 1 0
chr19:55230020|55230244 hsa-miR-942-5p 0 1 0
chr19:55230020|55230244 hsa-miR-3126-5p 1 0 0
chr19:55230020|55230244 hsa-miR-6760-5p 1 0 0
chr19:55230020|55230244 hsa-miR-3150b-3p 1 1 0
chr19:55230020|55230244 hsa-miR-3934-3p 1 1 0
chr19:55230020|55230244 hsa-miR-7109-5p 1 0 0
chr19:55230020|55230244 hsa-miR-185-5p 1 0 0
chr19:55230020|55230244 hsa-miR-92b-5p 1 0 0
chr19:55230020|55230244 hsa-miR-4783-5p 1 0 0
chr19:55230020|55230244 hsa-miR-1266-3p 0 1 0
chr19:55230020|55230244 hsa-miR-149-3p 1 0 0
chr19:55230020|55230244 hsa-miR-6824-5p 1 0 0
chr19:55230020|55230244 hsa-miR-6789-5p 1 0 0
chr19:55230020|55230244 hsa-miR-194-3p 0 1 0
chr19:55230020|55230244 hsa-miR-5010-5p 1 0 0
chr19:55230020|55230244 hsa-miR-7846-3p 1 0 0
chr19:55230020|55230244 hsa-miR-4707-5p 1 0 0
chr19:55230020|55230244 hsa-miR-519d-5p 0 1 0
chr19:55230020|55230244 hsa-miR-6814-5p 0 1 0
chr19:55230020|55230244 hsa-miR-6767-3p 0 1 0
chr19:55230020|55230244 hsa-miR-6734-3p 0 1 0
chr19:55230020|55230244 hsa-miR-1233-5p 1 0 0
chr19:55230020|55230244 hsa-miR-4763-3p 1 0 0
chr19:55230020|55230244 hsa-miR-6778-5p 1 0 0
chr19:55230020|55230244 hsa-miR-6870-5p 1 0 0
chr19:55230020|55230244 hsa-miR-1343-5p 1 0 0
chr19:55230020|55230244 hsa-miR-5001-5p 0 1 0
chr19:55230020|55230244 hsa-miR-6726-5p 1 1 0
chr19:55230020|55230244 hsa-miR-6754-5p 1 0 0
chr19:55230020|55230244 hsa-miR-6756-5p 1 1 0
chr19:55230020|55230244 hsa-miR-6851-5p 1 0 0
chr19:55230020|55230244 hsa-miR-11181-3p 1 0 0
chr19:55230020|55230244 hsa-miR-1249-5p 1 1 0
chr19:55230020|55230244 hsa-miR-6751-5p 1 1 0
chr19:55230020|55230244 hsa-miR-6797-5p 1 1 0
chr19:55230020|55230244 hsa-miR-6875-5p 1 0 0
chr19:55230020|55230244 hsa-miR-7111-5p 1 0 0
chr19:55230020|55230244 hsa-miR-4728-5p 1 1 0
chr19:55230020|55230244 hsa-miR-5196-5p 1 0 0
chr19:55230020|55230244 hsa-miR-6780b-5p 1 0 0
chr19:55230020|55230244 hsa-miR-1237-5p 1 0 0
chr19:55230020|55230244 hsa-miR-4632-5p 1 0 0
chr19:55230020|55230244 hsa-miR-4649-5p 1 0 0
chr19:55230020|55230244 hsa-miR-4745-5p 1 0 0
chr19:55230020|55230244 hsa-miR-6729-5p 1 1 0
chr19:55230020|55230244 hsa-miR-6795-5p 1 1 0
chr19:55230020|55230244 hsa-miR-6846-5p 1 0 0
chr19:55230020|55230244 hsa-miR-6848-5p 1 0 0
chr19:55230020|55230244 hsa-miR-6883-5p 1 0 0
chr19:55230020|55230244 hsa-miR-6887-5p 1 1 0
chr19:55230020|55230244 hsa-miR-4723-5p 1 0 0
chr19:55230020|55230244 hsa-miR-939-5p 1 1 0
chr19:55230020|55230244 hsa-miR-4758-5p 1 0 0
chr19:55230020|55230244 hsa-miR-30c-1-3p 1 0 0
chr19:55230020|55230244 hsa-miR-6731-5p 1 0 0
chr19:55230020|55230244 hsa-miR-6856-5p 1 0 0
chr19:55230020|55230244 hsa-miR-4665-5p 0 1 0
chr19:55230020|55230244 hsa-miR-6736-5p 1 0 0
chr19:55230020|55230244 hsa-miR-6876-5p 1 0 0
chr19:55230020|55230244 hsa-miR-6891-5p 1 0 0
chr19:55230020|55230244 hsa-miR-6785-5p 1 0 0
chr19:55230020|55230244 hsa-miR-5591-5p 0 1 0
chr19:55230020|55230244 hsa-miR-4756-5p 1 0 0
chr19:55230020|55230244 hsa-miR-6835-3p 1 1 0
chr19:55230020|55230244 hsa-miR-7153-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr19:55230020|55230244
ORF Type ORF1
Protein Length 27
Nucleotide Length 81
Protein Sequence MGRNREGCALEPPAQFGVLTLSRSPPS
Nucleotide Sequence CTGGGACGGAACAGGGAAGGCTGTGCTTTGGAGCCGCCAGCCCAGTTCGGTGTCCTCACTCTCTCTCGCTCTCCTCCCTCT

CircID chr19:55230020|55230244
ORF Type ORF2
Protein Length 47
Nucleotide Length 141
Protein Sequence MQRGTAGHVGGNLGTPNTSSRWDGTGKAVLWSRQPSSVSSLSLALLP
Nucleotide Sequence CTGCAGCGTGGGACAGCTGGGCACGTGGGTGGCAACCTTGGGACCCCTAACACCAGCTCCCGCTGGGACGGAACAGGGAAGGCTGTGCTTTGGAGCCGCCAGCCCAGTTCGGTGTCCTCACTCTCTCTCGCTCTCCTCCCT

CircID chr19:55230020|55230244
ORF Type ORF3
Protein Length 49
Nucleotide Length 147
Protein Sequence MRCSVGQLGTWVATLGPLTPAPAGTEQGRLCFGAASPVRCPHSLSLSSL
Nucleotide Sequence CTGCGCTGCAGCGTGGGACAGCTGGGCACGTGGGTGGCAACCTTGGGACCCCTAACACCAGCTCCCGCTGGGACGGAACAGGGAAGGCTGTGCTTTGGAGCCGCCAGCCCAGTTCGGTGTCCTCACTCTCTCTCGCTCTCCTCCCTC

CircID chr19:55230020|55230244
ORF Type ORF4
Protein Length 63
Nucleotide Length 189
Protein Sequence MGWRLQSTAFPVPSQRELVLGVPRLPPTCPAVPRCSADGHAHTRPFSSGPPWGTAQRGWGCQR
Nucleotide Sequence CTGGGCTGGCGGCTCCAAAGCACAGCCTTCCCTGTTCCGTCCCAGCGGGAGCTGGTGTTAGGGGTCCCAAGGTTGCCACCCACGTGCCCAGCTGTCCCACGCTGCAGCGCAGACGGCCACGCCCACACCCGGCCTTTTAGCTCAGGTCCACCATGGGGGACGGCCCAGCGTGGGTGGGGGTGCCAGAGG

CircID chr19:55230020|55230244
ORF Type ORF5
Protein Length 32
Nucleotide Length 96
Protein Sequence MSHAAAQTATPTPGLLAQVHHGGRPSVGGGAR
Nucleotide Sequence CTGTCCCACGCTGCAGCGCAGACGGCCACGCCCACACCCGGCCTTTTAGCTCAGGTCCACCATGGGGGACGGCCCAGCGTGGGTGGGGGTGCCAGA

CircID chr19:55230020|55230244
ORF Type ORF6
Protein Length 44
Nucleotide Length 135
Protein Sequence MAAPKHSLPCSVPAGAGVRGPKVATHVPSCPTLQRRRPRPHPAF
Nucleotide Sequence CTGGCGGCTCCAAAGCACAGCCTTCCCTGTTCCGTCCCAGCGGGAGCTGGTGTTAGGGGTCCCAAGGTTGCCACCCACGTGCCCAGCTGTCCCACGCTGCAGCGCAGACGGCCACGCCCACACCCGGCCTTTTAG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites