CircRNA Information

General Information
circRNA Basic Information
CircID chr19:55231419|55231639
Strand +
CircType exon
Host Gene ENSG00000105063.17;
Algorism CIRI2;
Sequence CTCAGGAAGCCACAGAAGGCAGCAAAGTCACGGAGCCCTCAGGTGAGCCCCGCTTTGCCCTGCCCACCCGCGGCCCTGGGCAGAGAGAGCAGCCTGGCCAGCTCCGAGCTTGCTGGGAGCTGCAGCTGAGATCTCTTATCCCCCACAGCCCCTTGCCAGGCCTTGGTTAGCATCGGGGACCTTCAGGCCACCTTCCACGGGATCCGTTCTGCCCCCAGCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:55231419|55231639 hsa-miR-31-5p 0 0 1
chr19:55231419|55231639 hsa-miR-31-3p 0 0 1
chr19:55231419|55231639 hsa-miR-493-5p 0 0 1
chr19:55231419|55231639 hsa-miR-493-3p 0 0 1
chr19:55231419|55231639 hsa-miR-625-5p 0 0 1
chr19:55231419|55231639 hsa-miR-625-3p 0 0 1
chr19:55231419|55231639 hsa-miR-637 1 1 1
chr19:55231419|55231639 hsa-miR-1301-5p 0 0 1
chr19:55231419|55231639 hsa-miR-1301-3p 0 0 1
chr19:55231419|55231639 hsa-miR-541-5p 0 0 1
chr19:55231419|55231639 hsa-miR-541-3p 0 0 1
chr19:55231419|55231639 hsa-miR-744-5p 0 0 1
chr19:55231419|55231639 hsa-miR-744-3p 0 0 1
chr19:55231419|55231639 hsa-miR-1237-5p 0 0 1
chr19:55231419|55231639 hsa-miR-1237-3p 0 0 1
chr19:55231419|55231639 hsa-miR-1200 0 0 1
chr19:55231419|55231639 hsa-miR-1275 0 0 1
chr19:55231419|55231639 hsa-miR-127-3p 0 1 1
chr19:55231419|55231639 hsa-miR-491-5p 0 0 1
chr19:55231419|55231639 hsa-miR-486-3p 0 0 1
chr19:55231419|55231639 hsa-miR-1184 0 1 1
chr19:55231419|55231639 hsa-miR-654-5p 0 0 1
chr19:55231419|55231639 hsa-miR-1207-3p 0 0 1
chr19:55231419|55231639 hsa-miR-1207-5p 1 1 1
chr19:55231419|55231639 hsa-miR-324-3p 0 0 1
chr19:55231419|55231639 hsa-miR-516a-3p 0 0 1
chr19:55231419|55231639 hsa-miR-886-3p 0 0 1
chr19:55231419|55231639 hsa-miR-608 1 0 0
chr19:55231419|55231639 hsa-miR-612 1 0 0
chr19:55231419|55231639 hsa-miR-663a 1 1 0
chr19:55231419|55231639 hsa-miR-762 1 1 0
chr19:55231419|55231639 hsa-miR-298 1 0 0
chr19:55231419|55231639 hsa-miR-1204 1 0 0
chr19:55231419|55231639 hsa-miR-1268a 1 0 0
chr19:55231419|55231639 hsa-miR-2117 0 1 0
chr19:55231419|55231639 hsa-miR-2861 1 1 0
chr19:55231419|55231639 hsa-miR-3132 1 0 0
chr19:55231419|55231639 hsa-miR-544b 0 1 0
chr19:55231419|55231639 hsa-miR-3196 1 0 0
chr19:55231419|55231639 hsa-miR-4322 1 0 0
chr19:55231419|55231639 hsa-miR-4265 1 0 0
chr19:55231419|55231639 hsa-miR-4281 1 0 0
chr19:55231419|55231639 hsa-miR-3918 0 1 0
chr19:55231419|55231639 hsa-miR-1268b 1 0 0
chr19:55231419|55231639 hsa-miR-4487 0 1 0
chr19:55231419|55231639 hsa-miR-4488 1 0 0
chr19:55231419|55231639 hsa-miR-4498 1 0 0
chr19:55231419|55231639 hsa-miR-4505 1 0 0
chr19:55231419|55231639 hsa-miR-4525 1 0 0
chr19:55231419|55231639 hsa-miR-4656 1 0 0
chr19:55231419|55231639 hsa-miR-4657 1 0 0
chr19:55231419|55231639 hsa-miR-4675 1 1 0
chr19:55231419|55231639 hsa-miR-4688 1 0 0
chr19:55231419|55231639 hsa-miR-4706 1 0 0
chr19:55231419|55231639 hsa-miR-4721 0 1 0
chr19:55231419|55231639 hsa-miR-4734 1 0 0
chr19:55231419|55231639 hsa-miR-4741 1 1 0
chr19:55231419|55231639 hsa-miR-5090 1 0 0
chr19:55231419|55231639 hsa-miR-5787 1 0 0
chr19:55231419|55231639 hsa-miR-6069 1 0 0
chr19:55231419|55231639 hsa-miR-6085 1 1 0
chr19:55231419|55231639 hsa-miR-6860 1 0 0
chr19:55231419|55231639 hsa-miR-7974 1 0 0
chr19:55231419|55231639 hsa-miR-8089 1 0 0
chr19:55231419|55231639 hsa-miR-12119 0 1 0
chr19:55231419|55231639 hsa-miR-4435 0 1 0
chr19:55231419|55231639 hsa-miR-4731-5p 1 1 0
chr19:55231419|55231639 hsa-miR-4687-3p 1 0 0
chr19:55231419|55231639 hsa-miR-6799-5p 1 0 0
chr19:55231419|55231639 hsa-miR-5187-5p 0 1 0
chr19:55231419|55231639 hsa-miR-6089 1 0 0
chr19:55231419|55231639 hsa-miR-6762-3p 0 1 0
chr19:55231419|55231639 hsa-miR-6727-5p 1 0 0
chr19:55231419|55231639 hsa-miR-4474-3p 0 1 0
chr19:55231419|55231639 hsa-miR-197-5p 1 0 0
chr19:55231419|55231639 hsa-miR-6873-3p 0 1 0
chr19:55231419|55231639 hsa-miR-6817-3p 0 1 0
chr19:55231419|55231639 hsa-miR-6787-3p 0 1 0
chr19:55231419|55231639 hsa-miR-6742-5p 1 0 0
chr19:55231419|55231639 hsa-miR-3151-5p 1 0 0
chr19:55231419|55231639 hsa-miR-1292-5p 1 0 0
chr19:55231419|55231639 hsa-miR-3180-3p 1 0 0
chr19:55231419|55231639 hsa-miR-6796-5p 1 1 0
chr19:55231419|55231639 hsa-miR-185-3p 0 1 0
chr19:55231419|55231639 hsa-miR-3190-3p 0 1 0
chr19:55231419|55231639 hsa-miR-6782-5p 1 0 0
chr19:55231419|55231639 hsa-miR-6882-3p 0 1 0
chr19:55231419|55231639 hsa-miR-6835-5p 1 0 0
chr19:55231419|55231639 hsa-miR-5088-5p 0 1 0
chr19:55231419|55231639 hsa-miR-7109-5p 1 0 0
chr19:55231419|55231639 hsa-miR-1226-5p 1 1 0
chr19:55231419|55231639 hsa-miR-1229-5p 1 0 0
chr19:55231419|55231639 hsa-miR-193b-5p 1 0 0
chr19:55231419|55231639 hsa-miR-6784-5p 0 1 0
chr19:55231419|55231639 hsa-miR-6753-5p 1 1 0
chr19:55231419|55231639 hsa-miR-885-3p 1 0 0
chr19:55231419|55231639 hsa-miR-4650-3p 1 0 0
chr19:55231419|55231639 hsa-miR-6749-5p 1 0 0
chr19:55231419|55231639 hsa-miR-3648 1 0 0
chr19:55231419|55231639 hsa-miR-6877-5p 1 0 0
chr19:55231419|55231639 hsa-miR-5010-5p 0 1 0
chr19:55231419|55231639 hsa-miR-7112-5p 1 0 0
chr19:55231419|55231639 hsa-miR-3190-5p 0 1 0
chr19:55231419|55231639 hsa-miR-4708-3p 0 1 0
chr19:55231419|55231639 hsa-miR-4695-3p 0 1 0
chr19:55231419|55231639 hsa-miR-3605-3p 0 1 0
chr19:55231419|55231639 hsa-miR-4283 0 1 0
chr19:55231419|55231639 hsa-miR-1233-5p 1 0 0
chr19:55231419|55231639 hsa-miR-4763-3p 1 1 0
chr19:55231419|55231639 hsa-miR-6769b-5p 1 0 0
chr19:55231419|55231639 hsa-miR-6787-5p 1 0 0
chr19:55231419|55231639 hsa-miR-6816-5p 1 1 0
chr19:55231419|55231639 hsa-miR-3180 1 0 0
chr19:55231419|55231639 hsa-miR-5001-5p 1 0 0
chr19:55231419|55231639 hsa-miR-6726-5p 1 0 0
chr19:55231419|55231639 hsa-miR-6743-5p 1 0 0
chr19:55231419|55231639 hsa-miR-6752-5p 1 0 0
chr19:55231419|55231639 hsa-miR-6756-5p 1 1 0
chr19:55231419|55231639 hsa-miR-6769a-5p 0 1 0
chr19:55231419|55231639 hsa-miR-6803-5p 1 0 0
chr19:55231419|55231639 hsa-miR-6813-5p 1 1 0
chr19:55231419|55231639 hsa-miR-6815-5p 0 1 0
chr19:55231419|55231639 hsa-miR-7107-5p 1 0 0
chr19:55231419|55231639 hsa-miR-7110-5p 1 0 0
chr19:55231419|55231639 hsa-miR-6722-3p 1 0 0
chr19:55231419|55231639 hsa-miR-6751-5p 1 0 0
chr19:55231419|55231639 hsa-miR-6779-5p 1 0 0
chr19:55231419|55231639 hsa-miR-6879-5p 1 1 0
chr19:55231419|55231639 hsa-miR-7111-5p 1 0 0
chr19:55231419|55231639 hsa-miR-1915-3p 0 1 0
chr19:55231419|55231639 hsa-miR-3620-5p 1 0 0
chr19:55231419|55231639 hsa-miR-4728-5p 1 0 0
chr19:55231419|55231639 hsa-miR-6836-5p 1 0 0
chr19:55231419|55231639 hsa-miR-10396a-5p 0 1 0
chr19:55231419|55231639 hsa-miR-10396b-5p 1 0 0
chr19:55231419|55231639 hsa-miR-1909-3p 1 0 0
chr19:55231419|55231639 hsa-miR-328-5p 1 0 0
chr19:55231419|55231639 hsa-miR-4632-5p 1 0 0
chr19:55231419|55231639 hsa-miR-4649-5p 1 0 0
chr19:55231419|55231639 hsa-miR-4685-5p 1 1 0
chr19:55231419|55231639 hsa-miR-4726-5p 1 0 0
chr19:55231419|55231639 hsa-miR-6729-5p 1 0 0
chr19:55231419|55231639 hsa-miR-6735-5p 1 0 0
chr19:55231419|55231639 hsa-miR-6846-5p 1 0 0
chr19:55231419|55231639 hsa-miR-6848-5p 1 0 0
chr19:55231419|55231639 hsa-miR-4723-5p 1 0 0
chr19:55231419|55231639 hsa-miR-6885-5p 1 0 0
chr19:55231419|55231639 hsa-miR-6731-5p 1 0 0
chr19:55231419|55231639 hsa-miR-7843-5p 1 0 0
chr19:55231419|55231639 hsa-miR-4665-5p 1 1 0
chr19:55231419|55231639 hsa-miR-4646-5p 1 0 0
chr19:55231419|55231639 hsa-miR-4667-5p 1 0 0
chr19:55231419|55231639 hsa-miR-3184-5p 1 0 0
chr19:55231419|55231639 hsa-miR-6529-5p 0 1 0
chr19:55231419|55231639 hsa-miR-6837-5p 1 1 0
chr19:55231419|55231639 hsa-miR-3622a-3p 0 1 0
chr19:55231419|55231639 hsa-miR-6764-5p 0 1 0
chr19:55231419|55231639 hsa-miR-99b-3p 0 1 0
chr19:55231419|55231639 hsa-miR-3622b-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:55231419|55231639
ORF Type ORF1
Protein Length 37
Nucleotide Length 111
Protein Sequence MLGAAAEISYPPQPLARPWLASGTFRPPSTGSVLPPA
Nucleotide Sequence TTGCTGGGAGCTGCAGCTGAGATCTCTTATCCCCCACAGCCCCTTGCCAGGCCTTGGTTAGCATCGGGGACCTTCAGGCCACCTTCCACGGGATCCGTTCTGCCCCCAGCT
CircID chr19:55231419|55231639
ORF Type ORF2
Protein Length 36
Nucleotide Length 111
Protein Sequence MPTRGPGQREQPGQLRACWELQLRSLIPHSPLPGLG
Nucleotide Sequence CTGCCCACCCGCGGCCCTGGGCAGAGAGAGCAGCCTGGCCAGCTCCGAGCTTGCTGGGAGCTGCAGCTGAGATCTCTTATCCCCCACAGCCCCTTGCCAGGCCTTGGTTAG
CircID chr19:55231419|55231639
ORF Type ORF3
Protein Length 44
Nucleotide Length 135
Protein Sequence MLTKAWQGAVGDKRSQLQLPASSELARLLSLPRAAGGQGKAGLT
Nucleotide Sequence ATGCTAACCAAGGCCTGGCAAGGGGCTGTGGGGGATAAGAGATCTCAGCTGCAGCTCCCAGCAAGCTCGGAGCTGGCCAGGCTGCTCTCTCTGCCCAGGGCCGCGGGTGGGCAGGGCAAAGCGGGGCTCACCTGA
CircID chr19:55231419|55231639
ORF Type ORF4
Protein Length 48
Nucleotide Length 147
Protein Sequence MWGIRDLSCSSQQARSWPGCSLCPGPRVGRAKRGSPEGSVTLLPSVAS
Nucleotide Sequence CTGTGGGGGATAAGAGATCTCAGCTGCAGCTCCCAGCAAGCTCGGAGCTGGCCAGGCTGCTCTCTCTGCCCAGGGCCGCGGGTGGGCAGGGCAAAGCGGGGCTCACCTGAGGGCTCCGTGACTTTGCTGCCTTCTGTGGCTTCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab