CircRNA Information

General Information
circRNA Basic Information
CircID chr19:55236721|55236970
Strand -
CircType exon
Host Gene ENSG00000105063.17;
Algorism CIRI2;
Sequence TCCCCTGAGCCCTGGGCCTCTTCCTCGTCCTCCTCTTCCTCATCATCATCAAACTGCTGGATGCGGTCCTTGTAGCATATCTCAAGTAGGTTGGCGTTGGGCTGCAGGGCACAGGGGTGGGAGGATGGGCCACACTGCCCACAGCCCCACACCCCTCCACCCGCCACAACCAGGGGACAGGGCAGTACTCACGTTCTCATCGTCAGCATTGAGGGAGAAGGTGATGTTGGCTGTCTTGTCAAAAGGTGCG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:55236721|55236970 hsa-miR-34a-5p 0 0 1
chr19:55236721|55236970 hsa-miR-34a-3p 0 0 1
chr19:55236721|55236970 hsa-miR-221-5p 0 0 1
chr19:55236721|55236970 hsa-miR-221-3p 0 0 1
chr19:55236721|55236970 hsa-miR-222-5p 0 0 1
chr19:55236721|55236970 hsa-miR-222-3p 0 0 1
chr19:55236721|55236970 hsa-miR-146a-5p 0 0 1
chr19:55236721|55236970 hsa-miR-146a-3p 0 0 1
chr19:55236721|55236970 hsa-miR-449a 0 0 1
chr19:55236721|55236970 hsa-miR-589-5p 0 0 1
chr19:55236721|55236970 hsa-miR-589-3p 0 0 1
chr19:55236721|55236970 hsa-miR-624-5p 0 0 1
chr19:55236721|55236970 hsa-miR-624-3p 0 0 1
chr19:55236721|55236970 hsa-miR-449b-5p 0 0 1
chr19:55236721|55236970 hsa-miR-449b-3p 0 0 1
chr19:55236721|55236970 hsa-miR-874-5p 0 0 1
chr19:55236721|55236970 hsa-miR-874-3p 0 0 1
chr19:55236721|55236970 hsa-miR-663b 0 0 1
chr19:55236721|55236970 hsa-miR-1266-5p 0 0 1
chr19:55236721|55236970 hsa-miR-1266-3p 0 0 1
chr19:55236721|55236970 hsa-miR-1272 0 0 1
chr19:55236721|55236970 hsa-miR-1278 0 0 1
chr19:55236721|55236970 hsa-miR-491-5p 0 0 1
chr19:55236721|55236970 hsa-miR-532-3p 0 0 1
chr19:55236721|55236970 hsa-miR-146b-3p 0 0 1
chr19:55236721|55236970 hsa-miR-339-5p 0 0 1
chr19:55236721|55236970 hsa-miR-1184 0 0 1
chr19:55236721|55236970 hsa-miR-1224-3p 0 0 1
chr19:55236721|55236970 hsa-miR-331-3p 0 0 1
chr19:55236721|55236970 hsa-miR-628-5p 0 0 1
chr19:55236721|55236970 hsa-miR-338-3p 0 0 1
chr19:55236721|55236970 hsa-miR-34c-5p 0 0 1
chr19:55236721|55236970 hsa-miR-146b-5p 0 0 1
chr19:55236721|55236970 hsa-miR-1260 0 0 1
chr19:55236721|55236970 hsa-miR-1280 0 0 1
chr19:55236721|55236970 hsa-miR-644 0 0 1
chr19:55236721|55236970 hsa-miR-514 0 0 1
chr19:55236721|55236970 hsa-miR-453 0 0 1
chr19:55236721|55236970 hsa-miR-24 0 0 1
chr19:55236721|55236970 hsa-miR-886-3p 0 0 1
chr19:55236721|55236970 hsa-miR-663 0 0 1
chr19:55236721|55236970 hsa-miR-499-3p 0 0 1
chr19:55236721|55236970 hsa-miR-611 1 0 0
chr19:55236721|55236970 hsa-miR-765 0 1 0
chr19:55236721|55236970 hsa-miR-1260a 0 1 0
chr19:55236721|55236970 hsa-miR-3125 1 0 0
chr19:55236721|55236970 hsa-miR-3132 1 0 0
chr19:55236721|55236970 hsa-miR-3154 1 0 0
chr19:55236721|55236970 hsa-miR-1260b 0 1 0
chr19:55236721|55236970 hsa-miR-4302 0 1 0
chr19:55236721|55236970 hsa-miR-4271 1 0 0
chr19:55236721|55236970 hsa-miR-3916 1 0 0
chr19:55236721|55236970 hsa-miR-4437 0 1 0
chr19:55236721|55236970 hsa-miR-4476 1 0 0
chr19:55236721|55236970 hsa-miR-4502 0 1 0
chr19:55236721|55236970 hsa-miR-4516 1 0 0
chr19:55236721|55236970 hsa-miR-4656 1 0 0
chr19:55236721|55236970 hsa-miR-4657 1 0 0
chr19:55236721|55236970 hsa-miR-4689 1 0 0
chr19:55236721|55236970 hsa-miR-4739 1 0 0
chr19:55236721|55236970 hsa-miR-4741 0 1 0
chr19:55236721|55236970 hsa-miR-5090 1 0 0
chr19:55236721|55236970 hsa-miR-5194 0 1 0
chr19:55236721|55236970 hsa-miR-5685 0 1 0
chr19:55236721|55236970 hsa-miR-6077 0 1 0
chr19:55236721|55236970 hsa-miR-6124 1 0 0
chr19:55236721|55236970 hsa-miR-6127 1 0 0
chr19:55236721|55236970 hsa-miR-6133 1 0 0
chr19:55236721|55236970 hsa-miR-6745 0 1 0
chr19:55236721|55236970 hsa-miR-8085 1 0 0
chr19:55236721|55236970 hsa-miR-12118 1 0 0
chr19:55236721|55236970 hsa-miR-6749-3p 0 1 0
chr19:55236721|55236970 hsa-miR-3194-3p 0 1 0
chr19:55236721|55236970 hsa-miR-6747-5p 0 1 0
chr19:55236721|55236970 hsa-miR-6765-5p 1 0 0
chr19:55236721|55236970 hsa-miR-6894-5p 1 0 0
chr19:55236721|55236970 hsa-miR-187-5p 0 1 0
chr19:55236721|55236970 hsa-miR-6833-5p 1 0 0
chr19:55236721|55236970 hsa-miR-6515-5p 0 1 0
chr19:55236721|55236970 hsa-miR-6880-5p 1 0 0
chr19:55236721|55236970 hsa-miR-7847-3p 1 0 0
chr19:55236721|55236970 hsa-miR-4695-5p 1 0 0
chr19:55236721|55236970 hsa-miR-4709-3p 1 0 0
chr19:55236721|55236970 hsa-miR-7154-3p 0 1 0
chr19:55236721|55236970 hsa-miR-197-5p 1 0 0
chr19:55236721|55236970 hsa-miR-3151-5p 0 1 0
chr19:55236721|55236970 hsa-miR-6796-5p 0 1 0
chr19:55236721|55236970 hsa-miR-6798-5p 1 0 0
chr19:55236721|55236970 hsa-miR-1224-5p 1 0 0
chr19:55236721|55236970 hsa-miR-2467-3p 1 0 0
chr19:55236721|55236970 hsa-miR-6782-5p 1 0 0
chr19:55236721|55236970 hsa-miR-7855-5p 1 0 0
chr19:55236721|55236970 hsa-miR-5008-5p 0 1 0
chr19:55236721|55236970 hsa-miR-5088-5p 0 1 0
chr19:55236721|55236970 hsa-miR-877-5p 1 0 0
chr19:55236721|55236970 hsa-miR-5196-3p 0 1 0
chr19:55236721|55236970 hsa-miR-149-3p 0 1 0
chr19:55236721|55236970 hsa-miR-6824-5p 1 0 0
chr19:55236721|55236970 hsa-miR-6889-3p 0 1 0
chr19:55236721|55236970 hsa-miR-1914-5p 0 1 0
chr19:55236721|55236970 hsa-miR-4763-3p 1 0 0
chr19:55236721|55236970 hsa-miR-6752-5p 0 1 0
chr19:55236721|55236970 hsa-miR-6756-5p 1 0 0
chr19:55236721|55236970 hsa-miR-6813-5p 1 0 0
chr19:55236721|55236970 hsa-miR-6851-5p 1 0 0
chr19:55236721|55236970 hsa-miR-10401-5p 0 1 0
chr19:55236721|55236970 hsa-miR-11181-3p 1 0 0
chr19:55236721|55236970 hsa-miR-1249-5p 1 0 0
chr19:55236721|55236970 hsa-miR-7111-5p 1 0 0
chr19:55236721|55236970 hsa-miR-320a-5p 0 1 0
chr19:55236721|55236970 hsa-miR-6780b-5p 1 0 0
chr19:55236721|55236970 hsa-miR-1909-3p 1 0 0
chr19:55236721|55236970 hsa-miR-4649-5p 1 0 0
chr19:55236721|55236970 hsa-miR-4685-5p 0 1 0
chr19:55236721|55236970 hsa-miR-6729-5p 1 0 0
chr19:55236721|55236970 hsa-miR-6738-5p 1 0 0
chr19:55236721|55236970 hsa-miR-675-5p 1 0 0
chr19:55236721|55236970 hsa-miR-6858-5p 1 0 0
chr19:55236721|55236970 hsa-miR-6831-5p 1 0 0
chr19:55236721|55236970 hsa-miR-6731-5p 1 0 0
chr19:55236721|55236970 hsa-miR-6799-3p 0 1 0
chr19:55236721|55236970 hsa-miR-3173-3p 1 0 0
chr19:55236721|55236970 hsa-miR-4646-5p 1 0 0
chr19:55236721|55236970 hsa-miR-6805-3p 0 1 0
chr19:55236721|55236970 hsa-miR-6837-5p 0 1 0
chr19:55236721|55236970 hsa-miR-6775-3p 0 1 0
chr19:55236721|55236970 hsa-miR-6529-3p 0 1 0
chr19:55236721|55236970 hsa-miR-6859-5p 1 0 0
chr19:55236721|55236970 hsa-miR-4690-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:55236721|55236970
ORF Type ORF1
Protein Length 53
Nucleotide Length 159
Protein Sequence MALGCRAQGWEDGPHCPQPHTPPPATTRGQGSTHVLIVSIEGEGDVGCLVKRC
Nucleotide Sequence TTGGCGTTGGGCTGCAGGGCACAGGGGTGGGAGGATGGGCCACACTGCCCACAGCCCCACACCCCTCCACCCGCCACAACCAGGGGACAGGGCAGTACTCACGTTCTCATCGTCAGCATTGAGGGAGAAGGTGATGTTGGCTGTCTTGTCAAAAGGTGC
CircID chr19:55236721|55236970
ORF Type ORF2
Protein Length 82
Nucleotide Length 246
Protein Sequence MSPGPLPRPPLPHHHQTAGCGPCSISQVGWRWAAGHRGGRMGHTAHSPTPLHPPQPGDRAVLTFSSSALREKVMLAVLSKGA
Nucleotide Sequence CTGAGCCCTGGGCCTCTTCCTCGTCCTCCTCTTCCTCATCATCATCAAACTGCTGGATGCGGTCCTTGTAGCATATCTCAAGTAGGTTGGCGTTGGGCTGCAGGGCACAGGGGTGGGAGGATGGGCCACACTGCCCACAGCCCCACACCCCTCCACCCGCCACAACCAGGGGACAGGGCAGTACTCACGTTCTCATCGTCAGCATTGAGGGAGAAGGTGATGTTGGCTGTCTTGTCAAAAGGTGCG
CircID chr19:55236721|55236970
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MGLFLVLLFLIIIKLLDAVLVAYLK
Nucleotide Sequence CTGGGCCTCTTCCTCGTCCTCCTCTTCCTCATCATCATCAAACTGCTGGATGCGGTCCTTGTAGCATATCTCAAGTAG
CircID chr19:55236721|55236970
ORF Type ORF4
Protein Length 36
Nucleotide Length 111
Protein Sequence MQGTGVGGWATLPTAPHPSTRHNQGTGQYSRSHRQH
Nucleotide Sequence CTGCAGGGCACAGGGGTGGGAGGATGGGCCACACTGCCCACAGCCCCACACCCCTCCACCCGCCACAACCAGGGGACAGGGCAGTACTCACGTTCTCATCGTCAGCATTGA
CircID chr19:55236721|55236970
ORF Type ORF5
Protein Length 56
Nucleotide Length 168
Protein Sequence MWRVEGCGAVGSVAHPPTPVPCSPTPTYLRYATRTASSSLMMMRKRRTRKRPRAQG
Nucleotide Sequence TTGTGGCGGGTGGAGGGGTGTGGGGCTGTGGGCAGTGTGGCCCATCCTCCCACCCCTGTGCCCTGCAGCCCAACGCCAACCTACTTGAGATATGCTACAAGGACCGCATCCAGCAGTTTGATGATGATGAGGAAGAGGAGGACGAGGAAGAGGCCCAGGGCTCAGGGG
CircID chr19:55236721|55236970
ORF Type ORF6
Protein Length 32
Nucleotide Length 99
Protein Sequence MSPGCGGWRGVGLWAVWPILPPLCPAAQRQPT
Nucleotide Sequence CTGTCCCCTGGTTGTGGCGGGTGGAGGGGTGTGGGGCTGTGGGCAGTGTGGCCCATCCTCCCACCCCTGTGCCCTGCAGCCCAACGCCAACCTACTTGA
CircID chr19:55236721|55236970
ORF Type ORF7
Protein Length 61
Nucleotide Length 183
Protein Sequence MPCPLVVAGGGVWGCGQCGPSSHPCALQPNANLLEICYKDRIQQFDDDEEEEDEEEAQGSG
Nucleotide Sequence CTGCCCTGTCCCCTGGTTGTGGCGGGTGGAGGGGTGTGGGGCTGTGGGCAGTGTGGCCCATCCTCCCACCCCTGTGCCCTGCAGCCCAACGCCAACCTACTTGAGATATGCTACAAGGACCGCATCCAGCAGTTTGATGATGATGAGGAAGAGGAGGACGAGGAAGAGGCCCAGGGCTCAGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab