CircRNA Information

General Information
circRNA Basic Information
CircID chr19:55386350|55386665
Strand +
CircType exon
Host Gene ENSG00000108107.11;
Algorism CIRI2;
Sequence ACCTTTGCCGTCGGCTGCCGGCTCCACGCCCACAGTCTTGCGGTGAATCAGTCCGTTGTAGCGGAAGGAATTGCGGGCCTTCAAGTTATTGGGCTCCTGGGAAGGAGGCGGCACAAGGCATCGTGAATAAGGGACCCGGAGACATGCGAAGGTCCCGCCCTCTGACCCAGAGTCAAGAGACTCAGGACCCTCCTCCCGCAGGAGCCACGCATCCGGGCCCCACTTACAGTGCTGTAGGTCTGCTTATTCCTCTTGATCAGGAAACTGGAGCAGTTCCGCACGACCATCCATTGCAGATGCGCAGACATGGCGGCGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:55386350|55386665 hsa-miR-326 1 0 1
chr19:55386350|55386665 hsa-miR-335-5p 0 0 1
chr19:55386350|55386665 hsa-miR-335-3p 0 0 1
chr19:55386350|55386665 hsa-miR-346 0 0 1
chr19:55386350|55386665 hsa-miR-572 0 0 1
chr19:55386350|55386665 hsa-miR-585-5p 0 0 1
chr19:55386350|55386665 hsa-miR-585-3p 0 0 1
chr19:55386350|55386665 hsa-miR-627-5p 0 0 1
chr19:55386350|55386665 hsa-miR-627-3p 0 0 1
chr19:55386350|55386665 hsa-miR-632 0 0 1
chr19:55386350|55386665 hsa-miR-765 0 0 1
chr19:55386350|55386665 hsa-miR-665 1 0 1
chr19:55386350|55386665 hsa-miR-924 0 0 1
chr19:55386350|55386665 hsa-miR-1200 0 0 1
chr19:55386350|55386665 hsa-miR-1281 0 0 1
chr19:55386350|55386665 hsa-miR-145-5p 0 0 1
chr19:55386350|55386665 hsa-miR-532-5p 0 0 1
chr19:55386350|55386665 hsa-miR-654-3p 0 0 1
chr19:55386350|55386665 hsa-miR-330-5p 0 0 1
chr19:55386350|55386665 hsa-miR-1268 0 0 1
chr19:55386350|55386665 hsa-miR-608 1 0 0
chr19:55386350|55386665 hsa-miR-661 1 0 0
chr19:55386350|55386665 hsa-miR-760 1 0 0
chr19:55386350|55386665 hsa-miR-1183 1 0 0
chr19:55386350|55386665 hsa-miR-3911 1 0 0
chr19:55386350|55386665 hsa-miR-4488 1 0 0
chr19:55386350|55386665 hsa-miR-4689 1 0 0
chr19:55386350|55386665 hsa-miR-4734 1 0 0
chr19:55386350|55386665 hsa-miR-4739 1 0 0
chr19:55386350|55386665 hsa-miR-7106-5p 1 0 0
chr19:55386350|55386665 hsa-miR-7108-5p 1 0 0
chr19:55386350|55386665 hsa-miR-6772-5p 1 0 0
chr19:55386350|55386665 hsa-miR-6796-5p 1 0 0
chr19:55386350|55386665 hsa-miR-6827-5p 1 0 0
chr19:55386350|55386665 hsa-miR-23a-5p 1 0 0
chr19:55386350|55386665 hsa-miR-4793-3p 1 0 0
chr19:55386350|55386665 hsa-miR-6821-5p 1 0 0
chr19:55386350|55386665 hsa-miR-2277-3p 1 0 0
chr19:55386350|55386665 hsa-miR-3191-5p 1 0 0
chr19:55386350|55386665 hsa-miR-937-5p 1 0 0
chr19:55386350|55386665 hsa-miR-6781-5p 1 0 0
chr19:55386350|55386665 hsa-miR-6792-5p 1 0 0
chr19:55386350|55386665 hsa-miR-6816-5p 1 0 0
chr19:55386350|55386665 hsa-miR-6752-5p 1 0 0
chr19:55386350|55386665 hsa-miR-6756-5p 1 0 0
chr19:55386350|55386665 hsa-miR-6803-5p 1 0 0
chr19:55386350|55386665 hsa-miR-10392-5p 1 0 0
chr19:55386350|55386665 hsa-miR-1237-5p 1 0 0
chr19:55386350|55386665 hsa-miR-6729-5p 1 0 0
chr19:55386350|55386665 hsa-miR-6858-5p 1 0 0
chr19:55386350|55386665 hsa-miR-1238-5p 1 0 0
chr19:55386350|55386665 hsa-miR-3173-3p 1 0 0
chr19:55386350|55386665 hsa-miR-6724-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:55386350|55386665
ORF Type ORF1
Protein Length 100
Nucleotide Length 300
Protein Sequence MPAPRPQSCGESVRCSGRNCGPSSYWAPGKEAAQGIVNKGPGDMRRSRPLTQSQETQDPPPAGATHPGPTYSAVGLLIPLDQETGAVPHDHPLQMRRHGG
Nucleotide Sequence CTGCCGGCTCCACGCCCACAGTCTTGCGGTGAATCAGTCCGTTGTAGCGGAAGGAATTGCGGGCCTTCAAGTTATTGGGCTCCTGGGAAGGAGGCGGCACAAGGCATCGTGAATAAGGGACCCGGAGACATGCGAAGGTCCCGCCCTCTGACCCAGAGTCAAGAGACTCAGGACCCTCCTCCCGCAGGAGCCACGCATCCGGGCCCCACTTACAGTGCTGTAGGTCTGCTTATTCCTCTTGATCAGGAAACTGGAGCAGTTCCGCACGACCATCCATTGCAGATGCGCAGACATGGCGGC
CircID chr19:55386350|55386665
ORF Type ORF2
Protein Length 67
Nucleotide Length 201
Protein Sequence MREEGPESLDSGSEGGTFACLRVPYSRCLVPPPSQEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG
Nucleotide Sequence CTGCGGGAGGAGGGTCCTGAGTCTCTTGACTCTGGGTCAGAGGGCGGGACCTTCGCATGTCTCCGGGTCCCTTATTCACGATGCCTTGTGCCGCCTCCTTCCCAGGAGCCCAATAACTTGAAGGCCCGCAATTCCTTCCGCTACAACGGACTGATTCACCGCAAGACTGTGGGCGTGGAGCCGGCAGCCGACGGCAAAGGT
CircID chr19:55386350|55386665
ORF Type ORF3
Protein Length 75
Nucleotide Length 228
Protein Sequence MSAHLQWMVVRNCSSFLIKRNKQTYSTVSGARMRGSCGRRVLSLLTLGQRAGPSHVSGSLIHDALCRLLPRSPIT
Nucleotide Sequence ATGTCTGCGCATCTGCAATGGATGGTCGTGCGGAACTGCTCCAGTTTCCTGATCAAGAGGAATAAGCAGACCTACAGCACTGTAAGTGGGGCCCGGATGCGTGGCTCCTGCGGGAGGAGGGTCCTGAGTCTCTTGACTCTGGGTCAGAGGGCGGGACCTTCGCATGTCTCCGGGTCCCTTATTCACGATGCCTTGTGCCGCCTCCTTCCCAGGAGCCCAATAACTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab