CircRNA Information

General Information
circRNA Basic Information
CircID chr19:55387949|55388337
Strand -
CircType exon
Host Gene ENSG00000108107.11;
Algorism CIRI2;
Sequence CTCCTATGTGCGGACCACCATCAACAAGAATGCTCGCGCCACGCTCAGCAGCATCAGACACATGATCCGCAAGAACAAGTACCGCCCCGACCTGCGCATGGTGAGCTGGGGTTTGGGGATCAGGCTTGGGGAGACTGGCCAGTGCTGTGGGGAAGGGCCTCCCACTACTGGTTGCAATATGGGCTGGAGAGGGATGGATTCTTGCTTTCAGCCTACTCCCCACACCCAGCATTGGCCTAGGGGGCGGCTTGTGGAGTGTATGGGCTGAGCCTTGCTCTGCTCCCCCGCCCCCAGGCAGCCATCCGCAGGGCCAGCGCCATCCTGCGCAGCCAGAAGCCTGTGATGGTGAAGAGGAAGCGGACCCGCCCCACCAAGAGCTCCTGAGCCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:55387949|55388337 hsa-miR-25-5p 0 0 1
chr19:55387949|55388337 hsa-miR-25-3p 0 0 1
chr19:55387949|55388337 hsa-miR-32-5p 0 0 1
chr19:55387949|55388337 hsa-miR-32-3p 0 0 1
chr19:55387949|55388337 hsa-miR-197-5p 0 0 1
chr19:55387949|55388337 hsa-miR-197-3p 0 0 1
chr19:55387949|55388337 hsa-miR-149-5p 0 0 1
chr19:55387949|55388337 hsa-miR-149-3p 0 0 1
chr19:55387949|55388337 hsa-miR-363-5p 0 0 1
chr19:55387949|55388337 hsa-miR-363-3p 0 0 1
chr19:55387949|55388337 hsa-miR-367-5p 0 0 1
chr19:55387949|55388337 hsa-miR-367-3p 0 0 1
chr19:55387949|55388337 hsa-miR-328-5p 0 0 1
chr19:55387949|55388337 hsa-miR-328-3p 0 0 1
chr19:55387949|55388337 hsa-miR-412-5p 0 0 1
chr19:55387949|55388337 hsa-miR-412-3p 0 0 1
chr19:55387949|55388337 hsa-miR-193b-5p 0 0 1
chr19:55387949|55388337 hsa-miR-193b-3p 0 0 1
chr19:55387949|55388337 hsa-miR-92b-5p 0 0 1
chr19:55387949|55388337 hsa-miR-92b-3p 0 0 1
chr19:55387949|55388337 hsa-miR-578 0 0 1
chr19:55387949|55388337 hsa-miR-604 0 0 1
chr19:55387949|55388337 hsa-miR-609 0 0 1
chr19:55387949|55388337 hsa-miR-637 0 0 1
chr19:55387949|55388337 hsa-miR-647 0 0 1
chr19:55387949|55388337 hsa-miR-652-5p 0 0 1
chr19:55387949|55388337 hsa-miR-652-3p 0 0 1
chr19:55387949|55388337 hsa-miR-661 0 0 1
chr19:55387949|55388337 hsa-miR-653-5p 0 0 1
chr19:55387949|55388337 hsa-miR-653-3p 0 0 1
chr19:55387949|55388337 hsa-miR-766-5p 0 0 1
chr19:55387949|55388337 hsa-miR-766-3p 0 0 1
chr19:55387949|55388337 hsa-miR-541-5p 0 0 1
chr19:55387949|55388337 hsa-miR-541-3p 0 0 1
chr19:55387949|55388337 hsa-miR-708-5p 0 0 1
chr19:55387949|55388337 hsa-miR-708-3p 0 0 1
chr19:55387949|55388337 hsa-miR-939-5p 0 0 1
chr19:55387949|55388337 hsa-miR-939-3p 0 0 1
chr19:55387949|55388337 hsa-miR-1179 0 0 1
chr19:55387949|55388337 hsa-miR-1291 0 0 1
chr19:55387949|55388337 hsa-miR-1279 0 0 1
chr19:55387949|55388337 hsa-miR-491-5p 0 0 1
chr19:55387949|55388337 hsa-miR-654-5p 0 0 1
chr19:55387949|55388337 hsa-miR-28-5p 0 0 1
chr19:55387949|55388337 hsa-miR-876-3p 0 0 1
chr19:55387949|55388337 hsa-miR-513a-5p 0 0 1
chr19:55387949|55388337 hsa-miR-199b-3p 0 0 1
chr19:55387949|55388337 hsa-miR-199a-3p 0 0 1
chr19:55387949|55388337 hsa-miR-193a-3p 0 0 1
chr19:55387949|55388337 hsa-miR-516a-3p 0 0 1
chr19:55387949|55388337 hsa-miR-323-5p 0 0 1
chr19:55387949|55388337 hsa-miR-642 0 0 1
chr19:55387949|55388337 hsa-miR-220c 0 0 1
chr19:55387949|55388337 hsa-miR-1254 0 0 1
chr19:55387949|55388337 hsa-miR-24 0 0 1
chr19:55387949|55388337 hsa-miR-1201 0 0 1
chr19:55387949|55388337 hsa-miR-663 0 0 1
chr19:55387949|55388337 hsa-miR-92a 0 0 1
chr19:55387949|55388337 hsa-miR-602 1 0 0
chr19:55387949|55388337 hsa-miR-638 1 0 0
chr19:55387949|55388337 hsa-miR-663a 1 0 0
chr19:55387949|55388337 hsa-miR-762 1 0 0
chr19:55387949|55388337 hsa-miR-760 1 0 0
chr19:55387949|55388337 hsa-miR-1268a 1 0 0
chr19:55387949|55388337 hsa-miR-1322 1 0 0
chr19:55387949|55388337 hsa-miR-2861 1 0 0
chr19:55387949|55388337 hsa-miR-3621 1 0 0
chr19:55387949|55388337 hsa-miR-3665 1 0 0
chr19:55387949|55388337 hsa-miR-3945 1 0 0
chr19:55387949|55388337 hsa-miR-1268b 1 0 0
chr19:55387949|55388337 hsa-miR-4488 1 0 0
chr19:55387949|55388337 hsa-miR-4656 1 0 0
chr19:55387949|55388337 hsa-miR-4741 1 0 0
chr19:55387949|55388337 hsa-miR-5572 1 0 0
chr19:55387949|55388337 hsa-miR-5787 1 0 0
chr19:55387949|55388337 hsa-miR-8089 1 0 0
chr19:55387949|55388337 hsa-miR-10226 1 0 0
chr19:55387949|55388337 hsa-miR-4433a-3p 1 0 0
chr19:55387949|55388337 hsa-miR-6765-5p 1 0 0
chr19:55387949|55388337 hsa-miR-6894-5p 1 0 0
chr19:55387949|55388337 hsa-miR-4687-3p 1 0 0
chr19:55387949|55388337 hsa-miR-6720-5p 1 0 0
chr19:55387949|55388337 hsa-miR-27a-5p 1 0 0
chr19:55387949|55388337 hsa-miR-6727-5p 1 0 0
chr19:55387949|55388337 hsa-miR-8069 1 0 0
chr19:55387949|55388337 hsa-miR-6742-5p 1 0 0
chr19:55387949|55388337 hsa-miR-3180-3p 1 0 0
chr19:55387949|55388337 hsa-miR-6829-5p 1 0 0
chr19:55387949|55388337 hsa-miR-6782-5p 1 0 0
chr19:55387949|55388337 hsa-miR-6786-5p 1 0 0
chr19:55387949|55388337 hsa-miR-4707-5p 1 0 0
chr19:55387949|55388337 hsa-miR-7151-5p 1 0 0
chr19:55387949|55388337 hsa-miR-2277-5p 1 0 0
chr19:55387949|55388337 hsa-miR-1296-3p 1 0 0
chr19:55387949|55388337 hsa-miR-1233-5p 1 0 0
chr19:55387949|55388337 hsa-miR-6787-5p 1 0 0
chr19:55387949|55388337 hsa-miR-6812-5p 1 0 0
chr19:55387949|55388337 hsa-miR-6816-5p 1 0 0
chr19:55387949|55388337 hsa-miR-3180 1 0 0
chr19:55387949|55388337 hsa-miR-6726-5p 1 0 0
chr19:55387949|55388337 hsa-miR-6756-5p 1 0 0
chr19:55387949|55388337 hsa-miR-6803-5p 1 0 0
chr19:55387949|55388337 hsa-miR-7107-5p 1 0 0
chr19:55387949|55388337 hsa-miR-7110-5p 1 0 0
chr19:55387949|55388337 hsa-miR-3620-5p 1 0 0
chr19:55387949|55388337 hsa-miR-10396b-5p 1 0 0
chr19:55387949|55388337 hsa-miR-1237-5p 1 0 0
chr19:55387949|55388337 hsa-miR-4649-5p 1 0 0
chr19:55387949|55388337 hsa-miR-6846-5p 1 0 0
chr19:55387949|55388337 hsa-miR-3085-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:55387949|55388337
ORF Type ORF1
Protein Length 44
Nucleotide Length 135
Protein Sequence MGFGDQAWGDWPVLWGRASHYWLQYGLERDGFLLSAYSPHPALA
Nucleotide Sequence CTGGGGTTTGGGGATCAGGCTTGGGGAGACTGGCCAGTGCTGTGGGGAAGGGCCTCCCACTACTGGTTGCAATATGGGCTGGAGAGGGATGGATTCTTGCTTTCAGCCTACTCCCCACACCCAGCATTGGCCTAG
CircID chr19:55387949|55388337
ORF Type ORF2
Protein Length 39
Nucleotide Length 120
Protein Sequence MSLALLPRPQAAIRRASAILRSQKPVMVKRKRTRPTKSS
Nucleotide Sequence CTGAGCCTTGCTCTGCTCCCCCGCCCCCAGGCAGCCATCCGCAGGGCCAGCGCCATCCTGCGCAGCCAGAAGCCTGTGATGGTGAAGAGGAAGCGGACCCGCCCCACCAAGAGCTCCTGA
CircID chr19:55387949|55388337
ORF Type ORF3
Protein Length 68
Nucleotide Length 207
Protein Sequence MIRKNKYRPDLRMVSWGLGIRLGETGQCCGEGPPTTGCNMGWRGMDSCFQPTPHTQHWPRGRLVECMG
Nucleotide Sequence ATGATCCGCAAGAACAAGTACCGCCCCGACCTGCGCATGGTGAGCTGGGGTTTGGGGATCAGGCTTGGGGAGACTGGCCAGTGCTGTGGGGAAGGGCCTCCCACTACTGGTTGCAATATGGGCTGGAGAGGGATGGATTCTTGCTTTCAGCCTACTCCCCACACCCAGCATTGGCCTAGGGGGCGGCTTGTGGAGTGTATGGGCTGA
CircID chr19:55387949|55388337
ORF Type ORF4
Protein Length 88
Nucleotide Length 264
Protein Sequence MGRLASAVGKGLPLLVAIWAGEGWILAFSLLPTPSIGLGGGLWSVWAEPCSAPPPPGSHPQGQRHPAQPEACDGEEEADPPHQELLSP
Nucleotide Sequence TTGGGGAGACTGGCCAGTGCTGTGGGGAAGGGCCTCCCACTACTGGTTGCAATATGGGCTGGAGAGGGATGGATTCTTGCTTTCAGCCTACTCCCCACACCCAGCATTGGCCTAGGGGGCGGCTTGTGGAGTGTATGGGCTGAGCCTTGCTCTGCTCCCCCGCCCCCAGGCAGCCATCCGCAGGGCCAGCGCCATCCTGCGCAGCCAGAAGCCTGTGATGGTGAAGAGGAAGCGGACCCGCCCCACCAAGAGCTCCTGAGCCCC
CircID chr19:55387949|55388337
ORF Type ORF5
Protein Length 45
Nucleotide Length 138
Protein Sequence MVGRVRFLFTITGFWLRRMALALRMAAWGRGSRARLSPYTPQAAP
Nucleotide Sequence TTGGTGGGGCGGGTCCGCTTCCTCTTCACCATCACAGGCTTCTGGCTGCGCAGGATGGCGCTGGCCCTGCGGATGGCTGCCTGGGGGCGGGGGAGCAGAGCAAGGCTCAGCCCATACACTCCACAAGCCGCCCCCTAG
CircID chr19:55387949|55388337
ORF Type ORF6
Protein Length 99
Nucleotide Length 297
Protein Sequence MPGGGGAEQGSAHTLHKPPPRPMLGVGSRLKARIHPSPAHIATSSGRPFPTALASLPKPDPQTPAHHAQVGAVLVLADHVSDAAERGASILVDGGPHIG
Nucleotide Sequence CTGCCTGGGGGCGGGGGAGCAGAGCAAGGCTCAGCCCATACACTCCACAAGCCGCCCCCTAGGCCAATGCTGGGTGTGGGGAGTAGGCTGAAAGCAAGAATCCATCCCTCTCCAGCCCATATTGCAACCAGTAGTGGGAGGCCCTTCCCCACAGCACTGGCCAGTCTCCCCAAGCCTGATCCCCAAACCCCAGCTCACCATGCGCAGGTCGGGGCGGTACTTGTTCTTGCGGATCATGTGTCTGATGCTGCTGAGCGTGGCGCGAGCATTCTTGTTGATGGTGGTCCGCACATAGGA
CircID chr19:55387949|55388337
ORF Type ORF7
Protein Length 41
Nucleotide Length 126
Protein Sequence MAAQDGAGPADGCLGAGEQSKAQPIHSTSRPLGQCWVWGVG
Nucleotide Sequence CTGGCTGCGCAGGATGGCGCTGGCCCTGCGGATGGCTGCCTGGGGGCGGGGGAGCAGAGCAAGGCTCAGCCCATACACTCCACAAGCCGCCCCCTAGGCCAATGCTGGGTGTGGGGAGTAGGCTGA
CircID chr19:55387949|55388337
ORF Type ORF8
Protein Length 57
Nucleotide Length 174
Protein Sequence MQPVVGGPSPQHWPVSPSLIPKPQLTMRRSGRYLFLRIMCLMLLSVARAFLLMVVRT
Nucleotide Sequence TTGCAACCAGTAGTGGGAGGCCCTTCCCCACAGCACTGGCCAGTCTCCCCAAGCCTGATCCCCAAACCCCAGCTCACCATGCGCAGGTCGGGGCGGTACTTGTTCTTGCGGATCATGTGTCTGATGCTGCTGAGCGTGGCGCGAGCATTCTTGTTGATGGTGGTCCGCACATAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab