CircRNA Information

General Information
circRNA Basic Information
CircID chr19:55387974|55388285
Strand -
CircType exon
Host Gene ENSG00000108107.11;
Algorism CIRI2;
Sequence AAGAATGCTCGCGCCACGCTCAGCAGCATCAGACACATGATCCGCAAGAACAAGTACCGCCCCGACCTGCGCATGGTGAGCTGGGGTTTGGGGATCAGGCTTGGGGAGACTGGCCAGTGCTGTGGGGAAGGGCCTCCCACTACTGGTTGCAATATGGGCTGGAGAGGGATGGATTCTTGCTTTCAGCCTACTCCCCACACCCAGCATTGGCCTAGGGGGCGGCTTGTGGAGTGTATGGGCTGAGCCTTGCTCTGCTCCCCCGCCCCCAGGCAGCCATCCGCAGGGCCAGCGCCATCCTGCGCAGCCAGAAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:55387974|55388285 hsa-miR-25-5p 0 0 1
chr19:55387974|55388285 hsa-miR-25-3p 0 0 1
chr19:55387974|55388285 hsa-miR-32-5p 0 0 1
chr19:55387974|55388285 hsa-miR-32-3p 0 0 1
chr19:55387974|55388285 hsa-miR-149-5p 0 0 1
chr19:55387974|55388285 hsa-miR-149-3p 0 0 1
chr19:55387974|55388285 hsa-miR-363-5p 0 0 1
chr19:55387974|55388285 hsa-miR-363-3p 0 0 1
chr19:55387974|55388285 hsa-miR-367-5p 0 0 1
chr19:55387974|55388285 hsa-miR-367-3p 0 0 1
chr19:55387974|55388285 hsa-miR-328-5p 0 0 1
chr19:55387974|55388285 hsa-miR-328-3p 0 0 1
chr19:55387974|55388285 hsa-miR-193b-5p 0 0 1
chr19:55387974|55388285 hsa-miR-193b-3p 0 0 1
chr19:55387974|55388285 hsa-miR-92b-5p 0 0 1
chr19:55387974|55388285 hsa-miR-92b-3p 0 0 1
chr19:55387974|55388285 hsa-miR-604 0 0 1
chr19:55387974|55388285 hsa-miR-609 0 0 1
chr19:55387974|55388285 hsa-miR-637 0 1 1
chr19:55387974|55388285 hsa-miR-647 0 0 1
chr19:55387974|55388285 hsa-miR-652-5p 0 0 1
chr19:55387974|55388285 hsa-miR-652-3p 0 0 1
chr19:55387974|55388285 hsa-miR-661 0 0 1
chr19:55387974|55388285 hsa-miR-766-5p 0 0 1
chr19:55387974|55388285 hsa-miR-766-3p 0 0 1
chr19:55387974|55388285 hsa-miR-939-5p 0 0 1
chr19:55387974|55388285 hsa-miR-939-3p 0 0 1
chr19:55387974|55388285 hsa-miR-1179 0 0 1
chr19:55387974|55388285 hsa-miR-1291 0 0 1
chr19:55387974|55388285 hsa-miR-1279 0 0 1
chr19:55387974|55388285 hsa-miR-491-5p 0 0 1
chr19:55387974|55388285 hsa-miR-199b-3p 0 0 1
chr19:55387974|55388285 hsa-miR-199a-3p 0 0 1
chr19:55387974|55388285 hsa-miR-193a-3p 0 0 1
chr19:55387974|55388285 hsa-miR-642 0 0 1
chr19:55387974|55388285 hsa-miR-1254 0 0 1
chr19:55387974|55388285 hsa-miR-24 0 0 1
chr19:55387974|55388285 hsa-miR-1201 0 0 1
chr19:55387974|55388285 hsa-miR-663 0 0 1
chr19:55387974|55388285 hsa-miR-92a 0 0 1
chr19:55387974|55388285 hsa-miR-638 1 0 0
chr19:55387974|55388285 hsa-miR-1322 1 1 0
chr19:55387974|55388285 hsa-miR-1913 0 1 0
chr19:55387974|55388285 hsa-miR-3196 0 1 0
chr19:55387974|55388285 hsa-miR-4313 0 1 0
chr19:55387974|55388285 hsa-miR-3621 1 1 0
chr19:55387974|55388285 hsa-miR-3665 1 0 0
chr19:55387974|55388285 hsa-miR-3929 0 1 0
chr19:55387974|55388285 hsa-miR-4466 1 0 0
chr19:55387974|55388285 hsa-miR-4488 0 1 0
chr19:55387974|55388285 hsa-miR-4656 1 1 0
chr19:55387974|55388285 hsa-miR-4663 1 0 0
chr19:55387974|55388285 hsa-miR-451b 0 1 0
chr19:55387974|55388285 hsa-miR-4741 1 0 0
chr19:55387974|55388285 hsa-miR-5685 0 1 0
chr19:55387974|55388285 hsa-miR-5698 0 1 0
chr19:55387974|55388285 hsa-miR-5787 1 0 0
chr19:55387974|55388285 hsa-miR-6081 1 1 0
chr19:55387974|55388285 hsa-miR-8089 1 1 0
chr19:55387974|55388285 hsa-miR-10226 1 1 0
chr19:55387974|55388285 hsa-miR-125b-2-3p 0 1 0
chr19:55387974|55388285 hsa-miR-93-3p 0 1 0
chr19:55387974|55388285 hsa-miR-6747-5p 0 1 0
chr19:55387974|55388285 hsa-miR-3150a-3p 0 1 0
chr19:55387974|55388285 hsa-miR-6894-5p 1 0 0
chr19:55387974|55388285 hsa-miR-4687-3p 1 0 0
chr19:55387974|55388285 hsa-miR-6720-5p 1 1 0
chr19:55387974|55388285 hsa-miR-6892-3p 0 1 0
chr19:55387974|55388285 hsa-miR-6757-5p 1 0 0
chr19:55387974|55388285 hsa-miR-3064-5p 0 1 0
chr19:55387974|55388285 hsa-miR-24-3p 0 1 0
chr19:55387974|55388285 hsa-miR-6762-3p 1 0 0
chr19:55387974|55388285 hsa-miR-8069 1 0 0
chr19:55387974|55388285 hsa-miR-127-3p 1 0 0
chr19:55387974|55388285 hsa-miR-3180-3p 0 1 0
chr19:55387974|55388285 hsa-miR-6796-5p 0 1 0
chr19:55387974|55388285 hsa-miR-6829-5p 1 0 0
chr19:55387974|55388285 hsa-miR-656-5p 1 0 0
chr19:55387974|55388285 hsa-miR-6782-5p 1 0 0
chr19:55387974|55388285 hsa-miR-5008-5p 0 1 0
chr19:55387974|55388285 hsa-miR-6850-5p 1 0 0
chr19:55387974|55388285 hsa-miR-3190-5p 0 1 0
chr19:55387974|55388285 hsa-miR-4707-5p 1 0 0
chr19:55387974|55388285 hsa-miR-1307-3p 1 0 0
chr19:55387974|55388285 hsa-miR-4727-3p 0 1 0
chr19:55387974|55388285 hsa-miR-383-3p 0 1 0
chr19:55387974|55388285 hsa-miR-7151-5p 1 1 0
chr19:55387974|55388285 hsa-miR-4632-3p 0 1 0
chr19:55387974|55388285 hsa-miR-6746-3p 0 1 0
chr19:55387974|55388285 hsa-miR-3151-3p 0 1 0
chr19:55387974|55388285 hsa-miR-2277-5p 1 1 0
chr19:55387974|55388285 hsa-miR-331-3p 0 1 0
chr19:55387974|55388285 hsa-miR-642a-5p 0 1 0
chr19:55387974|55388285 hsa-miR-1233-5p 1 1 0
chr19:55387974|55388285 hsa-miR-6787-5p 1 1 0
chr19:55387974|55388285 hsa-miR-6816-5p 0 1 0
chr19:55387974|55388285 hsa-miR-1343-5p 0 1 0
chr19:55387974|55388285 hsa-miR-3180 0 1 0
chr19:55387974|55388285 hsa-miR-6752-5p 1 0 0
chr19:55387974|55388285 hsa-miR-6756-5p 1 0 0
chr19:55387974|55388285 hsa-miR-6803-5p 1 1 0
chr19:55387974|55388285 hsa-miR-7107-5p 1 0 0
chr19:55387974|55388285 hsa-miR-7110-5p 1 1 0
chr19:55387974|55388285 hsa-miR-6763-5p 0 1 0
chr19:55387974|55388285 hsa-miR-7111-5p 0 1 0
chr19:55387974|55388285 hsa-miR-10396b-5p 0 1 0
chr19:55387974|55388285 hsa-miR-1237-5p 1 1 0
chr19:55387974|55388285 hsa-miR-6846-5p 1 0 0
chr19:55387974|55388285 hsa-miR-4723-5p 0 1 0
chr19:55387974|55388285 hsa-miR-6885-5p 0 1 0
chr19:55387974|55388285 hsa-miR-6799-3p 0 1 0
chr19:55387974|55388285 hsa-miR-4731-3p 0 1 0
chr19:55387974|55388285 hsa-miR-3059-5p 0 1 0
chr19:55387974|55388285 hsa-miR-6512-3p 0 1 0
chr19:55387974|55388285 hsa-miR-4690-3p 0 1 0
chr19:55387974|55388285 hsa-miR-6504-5p 0 1 0
chr19:55387974|55388285 hsa-miR-6771-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:55387974|55388285
ORF Type ORF1
Protein Length 68
Nucleotide Length 207
Protein Sequence MIRKNKYRPDLRMVSWGLGIRLGETGQCCGEGPPTTGCNMGWRGMDSCFQPTPHTQHWPRGRLVECMG
Nucleotide Sequence ATGATCCGCAAGAACAAGTACCGCCCCGACCTGCGCATGGTGAGCTGGGGTTTGGGGATCAGGCTTGGGGAGACTGGCCAGTGCTGTGGGGAAGGGCCTCCCACTACTGGTTGCAATATGGGCTGGAGAGGGATGGATTCTTGCTTTCAGCCTACTCCCCACACCCAGCATTGGCCTAGGGGGCGGCTTGTGGAGTGTATGGGCTGA
CircID chr19:55387974|55388285
ORF Type ORF2
Protein Length 70
Nucleotide Length 210
Protein Sequence MGRLASAVGKGLPLLVAIWAGEGWILAFSLLPTPSIGLGGGLWSVWAEPCSAPPPPGSHPQGQRHPAQPE
Nucleotide Sequence TTGGGGAGACTGGCCAGTGCTGTGGGGAAGGGCCTCCCACTACTGGTTGCAATATGGGCTGGAGAGGGATGGATTCTTGCTTTCAGCCTACTCCCCACACCCAGCATTGGCCTAGGGGGCGGCTTGTGGAGTGTATGGGCTGAGCCTTGCTCTGCTCCCCCGCCCCCAGGCAGCCATCCGCAGGGCCAGCGCCATCCTGCGCAGCCAGAA
CircID chr19:55387974|55388285
ORF Type ORF3
Protein Length 44
Nucleotide Length 135
Protein Sequence MGFGDQAWGDWPVLWGRASHYWLQYGLERDGFLLSAYSPHPALA
Nucleotide Sequence CTGGGGTTTGGGGATCAGGCTTGGGGAGACTGGCCAGTGCTGTGGGGAAGGGCCTCCCACTACTGGTTGCAATATGGGCTGGAGAGGGATGGATTCTTGCTTTCAGCCTACTCCCCACACCCAGCATTGGCCTAG
CircID chr19:55387974|55388285
ORF Type ORF4
Protein Length 91
Nucleotide Length 273
Protein Sequence MPGGGGAEQGSAHTLHKPPPRPMLGVGSRLKARIHPSPAHIATSSGRPFPTALASLPKPDPQTPAHHAQVGAVLVLADHVSDAAERGASIL
Nucleotide Sequence CTGCCTGGGGGCGGGGGAGCAGAGCAAGGCTCAGCCCATACACTCCACAAGCCGCCCCCTAGGCCAATGCTGGGTGTGGGGAGTAGGCTGAAAGCAAGAATCCATCCCTCTCCAGCCCATATTGCAACCAGTAGTGGGAGGCCCTTCCCCACAGCACTGGCCAGTCTCCCCAAGCCTGATCCCCAAACCCCAGCTCACCATGCGCAGGTCGGGGCGGTACTTGTTCTTGCGGATCATGTGTCTGATGCTGCTGAGCGTGGCGCGAGCATTCTT
CircID chr19:55387974|55388285
ORF Type ORF5
Protein Length 41
Nucleotide Length 126
Protein Sequence MAAQDGAGPADGCLGAGEQSKAQPIHSTSRPLGQCWVWGVG
Nucleotide Sequence CTGGCTGCGCAGGATGGCGCTGGCCCTGCGGATGGCTGCCTGGGGGCGGGGGAGCAGAGCAAGGCTCAGCCCATACACTCCACAAGCCGCCCCCTAGGCCAATGCTGGGTGTGGGGAGTAGGCTGA
CircID chr19:55387974|55388285
ORF Type ORF6
Protein Length 50
Nucleotide Length 150
Protein Sequence MQPVVGGPSPQHWPVSPSLIPKPQLTMRRSGRYLFLRIMCLMLLSVARAF
Nucleotide Sequence TTGCAACCAGTAGTGGGAGGCCCTTCCCCACAGCACTGGCCAGTCTCCCCAAGCCTGATCCCCAAACCCCAGCTCACCATGCGCAGGTCGGGGCGGTACTTGTTCTTGCGGATCATGTGTCTGATGCTGCTGAGCGTGGCGCGAGCATTC
CircID chr19:55387974|55388285
ORF Type ORF7
Protein Length 30
Nucleotide Length 93
Protein Sequence MRRMALALRMAAWGRGSRARLSPYTPQAAP
Nucleotide Sequence CTGCGCAGGATGGCGCTGGCCCTGCGGATGGCTGCCTGGGGGCGGGGGAGCAGAGCAAGGCTCAGCCCATACACTCCACAAGCCGCCCCCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab