CircRNA Information

General Information
circRNA Basic Information
CircID chr19:55388000|55388287
Strand +
CircType exon
Host Gene ENSG00000108107.11;
Algorism CIRI2;
Sequence AGGCTTCTGGCTGCGCAGGATGGCGCTGGCCCTGCGGATGGCTGCCTGGGGGCGGGGGAGCAGAGCAAGGCTCAGCCCATACACTCCACAAGCCGCCCCCTAGGCCAATGCTGGGTGTGGGGAGTAGGCTGAAAGCAAGAATCCATCCCTCTCCAGCCCATATTGCAACCAGTAGTGGGAGGCCCTTCCCCACAGCACTGGCCAGTCTCCCCAAGCCTGATCCCCAAACCCCAGCTCACCATGCGCAGGTCGGGGCGGTACTTGTTCTTGCGGATCATGTGTCTGATG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:55388000|55388287 hsa-miR-122-5p 0 0 1
chr19:55388000|55388287 hsa-miR-122-3p 0 0 1
chr19:55388000|55388287 hsa-miR-185-5p 0 0 1
chr19:55388000|55388287 hsa-miR-185-3p 0 0 1
chr19:55388000|55388287 hsa-miR-484 0 0 1
chr19:55388000|55388287 hsa-miR-193b-5p 0 0 1
chr19:55388000|55388287 hsa-miR-193b-3p 0 0 1
chr19:55388000|55388287 hsa-miR-558 0 0 1
chr19:55388000|55388287 hsa-miR-939-5p 0 0 1
chr19:55388000|55388287 hsa-miR-939-3p 0 0 1
chr19:55388000|55388287 hsa-miR-1246 0 0 1
chr19:55388000|55388287 hsa-miR-1324 0 0 1
chr19:55388000|55388287 hsa-miR-1825 0 0 1
chr19:55388000|55388287 hsa-miR-512-3p 0 0 1
chr19:55388000|55388287 hsa-miR-491-5p 0 1 1
chr19:55388000|55388287 hsa-miR-532-3p 0 0 1
chr19:55388000|55388287 hsa-miR-361-3p 0 1 1
chr19:55388000|55388287 hsa-miR-767-3p 0 0 1
chr19:55388000|55388287 hsa-miR-338-3p 0 0 1
chr19:55388000|55388287 hsa-miR-193a-3p 0 0 1
chr19:55388000|55388287 hsa-miR-608 1 0 0
chr19:55388000|55388287 hsa-miR-612 1 0 0
chr19:55388000|55388287 hsa-miR-637 1 0 0
chr19:55388000|55388287 hsa-miR-638 1 0 0
chr19:55388000|55388287 hsa-miR-762 1 1 0
chr19:55388000|55388287 hsa-miR-1268a 1 0 0
chr19:55388000|55388287 hsa-miR-1269a 1 0 0
chr19:55388000|55388287 hsa-miR-1539 0 1 0
chr19:55388000|55388287 hsa-miR-2110 1 1 0
chr19:55388000|55388287 hsa-miR-718 1 0 0
chr19:55388000|55388287 hsa-miR-3170 1 1 0
chr19:55388000|55388287 hsa-miR-3175 0 1 0
chr19:55388000|55388287 hsa-miR-3193 0 1 0
chr19:55388000|55388287 hsa-miR-3196 1 0 0
chr19:55388000|55388287 hsa-miR-4301 0 1 0
chr19:55388000|55388287 hsa-miR-4322 1 0 0
chr19:55388000|55388287 hsa-miR-4259 1 1 0
chr19:55388000|55388287 hsa-miR-3652 1 0 0
chr19:55388000|55388287 hsa-miR-1268b 1 0 0
chr19:55388000|55388287 hsa-miR-4430 1 0 0
chr19:55388000|55388287 hsa-miR-4450 1 0 0
chr19:55388000|55388287 hsa-miR-4492 1 0 0
chr19:55388000|55388287 hsa-miR-4498 1 0 0
chr19:55388000|55388287 hsa-miR-4505 1 0 0
chr19:55388000|55388287 hsa-miR-4507 1 1 0
chr19:55388000|55388287 hsa-miR-4512 0 1 0
chr19:55388000|55388287 hsa-miR-4515 1 0 0
chr19:55388000|55388287 hsa-miR-1269b 1 0 0
chr19:55388000|55388287 hsa-miR-1587 1 1 0
chr19:55388000|55388287 hsa-miR-4539 1 0 0
chr19:55388000|55388287 hsa-miR-4643 0 1 0
chr19:55388000|55388287 hsa-miR-4651 1 0 0
chr19:55388000|55388287 hsa-miR-4656 1 0 0
chr19:55388000|55388287 hsa-miR-4673 0 1 0
chr19:55388000|55388287 hsa-miR-4674 1 0 0
chr19:55388000|55388287 hsa-miR-4689 1 0 0
chr19:55388000|55388287 hsa-miR-4741 1 0 0
chr19:55388000|55388287 hsa-miR-4748 1 1 0
chr19:55388000|55388287 hsa-miR-4767 1 0 0
chr19:55388000|55388287 hsa-miR-5572 1 0 0
chr19:55388000|55388287 hsa-miR-5691 0 1 0
chr19:55388000|55388287 hsa-miR-5698 1 0 0
chr19:55388000|55388287 hsa-miR-5705 1 0 0
chr19:55388000|55388287 hsa-miR-5787 1 1 0
chr19:55388000|55388287 hsa-miR-6069 1 0 0
chr19:55388000|55388287 hsa-miR-6085 1 0 0
chr19:55388000|55388287 hsa-miR-6860 1 1 0
chr19:55388000|55388287 hsa-miR-8074 1 0 0
chr19:55388000|55388287 hsa-miR-8089 1 1 0
chr19:55388000|55388287 hsa-miR-11399 1 0 0
chr19:55388000|55388287 hsa-miR-12131 1 0 0
chr19:55388000|55388287 hsa-miR-138-5p 1 0 0
chr19:55388000|55388287 hsa-miR-134-3p 1 0 0
chr19:55388000|55388287 hsa-miR-4435 0 1 0
chr19:55388000|55388287 hsa-miR-4731-5p 1 0 0
chr19:55388000|55388287 hsa-miR-7155-5p 0 1 0
chr19:55388000|55388287 hsa-miR-3194-3p 0 1 0
chr19:55388000|55388287 hsa-miR-6747-5p 1 0 0
chr19:55388000|55388287 hsa-miR-3150a-3p 1 1 0
chr19:55388000|55388287 hsa-miR-6861-5p 1 0 0
chr19:55388000|55388287 hsa-miR-6825-5p 1 0 0
chr19:55388000|55388287 hsa-miR-6894-5p 1 0 0
chr19:55388000|55388287 hsa-miR-6857-5p 1 1 0
chr19:55388000|55388287 hsa-miR-6728-5p 1 0 0
chr19:55388000|55388287 hsa-miR-3692-5p 1 0 0
chr19:55388000|55388287 hsa-miR-7114-5p 1 0 0
chr19:55388000|55388287 hsa-miR-6089 1 0 0
chr19:55388000|55388287 hsa-miR-7160-5p 1 0 0
chr19:55388000|55388287 hsa-miR-6840-5p 0 1 0
chr19:55388000|55388287 hsa-miR-8069 1 0 0
chr19:55388000|55388287 hsa-miR-5589-5p 1 0 0
chr19:55388000|55388287 hsa-miR-6776-5p 1 0 0
chr19:55388000|55388287 hsa-miR-6742-5p 1 0 0
chr19:55388000|55388287 hsa-miR-1292-5p 1 0 0
chr19:55388000|55388287 hsa-miR-3180-3p 0 1 0
chr19:55388000|55388287 hsa-miR-6796-5p 1 1 0
chr19:55388000|55388287 hsa-miR-6829-5p 1 0 0
chr19:55388000|55388287 hsa-miR-6732-5p 1 0 0
chr19:55388000|55388287 hsa-miR-6805-5p 1 1 0
chr19:55388000|55388287 hsa-miR-6798-5p 1 0 0
chr19:55388000|55388287 hsa-miR-6881-5p 1 0 0
chr19:55388000|55388287 hsa-miR-6728-3p 0 1 0
chr19:55388000|55388287 hsa-miR-6810-5p 1 0 0
chr19:55388000|55388287 hsa-miR-7855-5p 1 0 0
chr19:55388000|55388287 hsa-miR-6735-3p 1 0 0
chr19:55388000|55388287 hsa-miR-6740-5p 1 0 0
chr19:55388000|55388287 hsa-miR-4793-5p 0 1 0
chr19:55388000|55388287 hsa-miR-3944-3p 1 0 0
chr19:55388000|55388287 hsa-miR-1229-5p 1 0 0
chr19:55388000|55388287 hsa-miR-542-5p 1 0 0
chr19:55388000|55388287 hsa-miR-4640-5p 1 1 0
chr19:55388000|55388287 hsa-miR-1228-5p 1 0 0
chr19:55388000|55388287 hsa-miR-296-3p 1 0 0
chr19:55388000|55388287 hsa-miR-6771-5p 1 0 0
chr19:55388000|55388287 hsa-miR-6823-5p 1 0 0
chr19:55388000|55388287 hsa-miR-3677-3p 1 0 0
chr19:55388000|55388287 hsa-miR-4713-3p 1 0 0
chr19:55388000|55388287 hsa-miR-485-5p 0 1 0
chr19:55388000|55388287 hsa-miR-6749-5p 1 0 0
chr19:55388000|55388287 hsa-miR-6739-3p 0 1 0
chr19:55388000|55388287 hsa-miR-4446-3p 1 0 0
chr19:55388000|55388287 hsa-miR-149-3p 1 0 0
chr19:55388000|55388287 hsa-miR-6824-5p 1 0 0
chr19:55388000|55388287 hsa-miR-4684-3p 0 1 0
chr19:55388000|55388287 hsa-miR-6781-5p 1 0 0
chr19:55388000|55388287 hsa-miR-574-5p 0 1 0
chr19:55388000|55388287 hsa-miR-3158-3p 0 1 0
chr19:55388000|55388287 hsa-miR-873-3p 0 1 0
chr19:55388000|55388287 hsa-miR-6828-3p 1 1 0
chr19:55388000|55388287 hsa-miR-744-5p 1 1 0
chr19:55388000|55388287 hsa-miR-541-5p 1 0 0
chr19:55388000|55388287 hsa-miR-3620-3p 1 0 0
chr19:55388000|55388287 hsa-miR-1911-5p 0 1 0
chr19:55388000|55388287 hsa-miR-6731-3p 0 1 0
chr19:55388000|55388287 hsa-miR-4763-3p 1 0 0
chr19:55388000|55388287 hsa-miR-6787-5p 1 0 0
chr19:55388000|55388287 hsa-miR-6812-5p 1 0 0
chr19:55388000|55388287 hsa-miR-6816-5p 1 0 0
chr19:55388000|55388287 hsa-miR-1343-5p 1 0 0
chr19:55388000|55388287 hsa-miR-5001-5p 1 1 0
chr19:55388000|55388287 hsa-miR-6726-5p 1 0 0
chr19:55388000|55388287 hsa-miR-6737-5p 1 0 0
chr19:55388000|55388287 hsa-miR-6756-5p 1 0 0
chr19:55388000|55388287 hsa-miR-6803-5p 1 0 0
chr19:55388000|55388287 hsa-miR-6813-5p 1 0 0
chr19:55388000|55388287 hsa-miR-6819-5p 1 1 0
chr19:55388000|55388287 hsa-miR-6722-3p 1 0 0
chr19:55388000|55388287 hsa-miR-6751-5p 1 0 0
chr19:55388000|55388287 hsa-miR-6763-5p 1 1 0
chr19:55388000|55388287 hsa-miR-6779-5p 1 0 0
chr19:55388000|55388287 hsa-miR-7111-5p 1 0 0
chr19:55388000|55388287 hsa-miR-3620-5p 1 1 0
chr19:55388000|55388287 hsa-miR-4728-5p 1 0 0
chr19:55388000|55388287 hsa-miR-6780b-5p 0 1 0
chr19:55388000|55388287 hsa-miR-6836-5p 1 1 0
chr19:55388000|55388287 hsa-miR-328-5p 1 0 0
chr19:55388000|55388287 hsa-miR-4726-5p 0 1 0
chr19:55388000|55388287 hsa-miR-4745-5p 1 0 0
chr19:55388000|55388287 hsa-miR-4749-5p 1 0 0
chr19:55388000|55388287 hsa-miR-6777-5p 0 1 0
chr19:55388000|55388287 hsa-miR-6795-5p 1 0 0
chr19:55388000|55388287 hsa-miR-6846-5p 1 0 0
chr19:55388000|55388287 hsa-miR-6848-5p 1 0 0
chr19:55388000|55388287 hsa-miR-3187-5p 1 0 0
chr19:55388000|55388287 hsa-miR-4769-5p 1 0 0
chr19:55388000|55388287 hsa-miR-3085-5p 0 1 0
chr19:55388000|55388287 hsa-miR-3940-5p 1 1 0
chr19:55388000|55388287 hsa-miR-30c-1-3p 1 0 0
chr19:55388000|55388287 hsa-miR-6758-5p 1 0 0
chr19:55388000|55388287 hsa-miR-1914-3p 1 0 0
chr19:55388000|55388287 hsa-miR-6855-5p 1 1 0
chr19:55388000|55388287 hsa-miR-4700-5p 1 0 0
chr19:55388000|55388287 hsa-miR-6785-5p 1 0 0
chr19:55388000|55388287 hsa-miR-6762-5p 1 0 0
chr19:55388000|55388287 hsa-miR-6805-3p 1 1 0
chr19:55388000|55388287 hsa-miR-10400-3p 1 0 0
chr19:55388000|55388287 hsa-miR-6751-3p 0 1 0
chr19:55388000|55388287 hsa-miR-195-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:55388000|55388287
ORF Type ORF1
Protein Length 41
Nucleotide Length 126
Protein Sequence MAAQDGAGPADGCLGAGEQSKAQPIHSTSRPLGQCWVWGVG
Nucleotide Sequence CTGGCTGCGCAGGATGGCGCTGGCCCTGCGGATGGCTGCCTGGGGGCGGGGGAGCAGAGCAAGGCTCAGCCCATACACTCCACAAGCCGCCCCCTAGGCCAATGCTGGGTGTGGGGAGTAGGCTGA
CircID chr19:55388000|55388287
ORF Type ORF2
Protein Length 42
Nucleotide Length 126
Protein Sequence MQPVVGGPSPQHWPVSPSLIPKPQLTMRRSGRYLFLRIMCLM
Nucleotide Sequence TTGCAACCAGTAGTGGGAGGCCCTTCCCCACAGCACTGGCCAGTCTCCCCAAGCCTGATCCCCAAACCCCAGCTCACCATGCGCAGGTCGGGGCGGTACTTGTTCTTGCGGATCATGTGTCTGATG
CircID chr19:55388000|55388287
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MRRMALALRMAAWGRGSRARLSPYTPQAAP
Nucleotide Sequence CTGCGCAGGATGGCGCTGGCCCTGCGGATGGCTGCCTGGGGGCGGGGGAGCAGAGCAAGGCTCAGCCCATACACTCCACAAGCCGCCCCCTAG
CircID chr19:55388000|55388287
ORF Type ORF4
Protein Length 82
Nucleotide Length 246
Protein Sequence MPGGGGAEQGSAHTLHKPPPRPMLGVGSRLKARIHPSPAHIATSSGRPFPTALASLPKPDPQTPAHHAQVGAVLVLADHVSD
Nucleotide Sequence CTGCCTGGGGGCGGGGGAGCAGAGCAAGGCTCAGCCCATACACTCCACAAGCCGCCCCCTAGGCCAATGCTGGGTGTGGGGAGTAGGCTGAAAGCAAGAATCCATCCCTCTCCAGCCCATATTGCAACCAGTAGTGGGAGGCCCTTCCCCACAGCACTGGCCAGTCTCCCCAAGCCTGATCCCCAAACCCCAGCTCACCATGCGCAGGTCGGGGCGGTACTTGTTCTTGCGGATCATGTGTCTGAT
CircID chr19:55388000|55388287
ORF Type ORF5
Protein Length 44
Nucleotide Length 135
Protein Sequence MGFGDQAWGDWPVLWGRASHYWLQYGLERDGFLLSAYSPHPALA
Nucleotide Sequence CTGGGGTTTGGGGATCAGGCTTGGGGAGACTGGCCAGTGCTGTGGGGAAGGGCCTCCCACTACTGGTTGCAATATGGGCTGGAGAGGGATGGATTCTTGCTTTCAGCCTACTCCCCACACCCAGCATTGGCCTAG
CircID chr19:55388000|55388287
ORF Type ORF6
Protein Length 25
Nucleotide Length 75
Protein Sequence MSLALLPRPQAAIRRASAILRSQKP
Nucleotide Sequence CTGAGCCTTGCTCTGCTCCCCCGCCCCCAGGCAGCCATCCGCAGGGCCAGCGCCATCCTGCGCAGCCAGAAGCCT
CircID chr19:55388000|55388287
ORF Type ORF7
Protein Length 68
Nucleotide Length 207
Protein Sequence MIRKNKYRPDLRMVSWGLGIRLGETGQCCGEGPPTTGCNMGWRGMDSCFQPTPHTQHWPRGRLVECMG
Nucleotide Sequence ATGATCCGCAAGAACAAGTACCGCCCCGACCTGCGCATGGTGAGCTGGGGTTTGGGGATCAGGCTTGGGGAGACTGGCCAGTGCTGTGGGGAAGGGCCTCCCACTACTGGTTGCAATATGGGCTGGAGAGGGATGGATTCTTGCTTTCAGCCTACTCCCCACACCCAGCATTGGCCTAGGGGGCGGCTTGTGGAGTGTATGGGCTGA
CircID chr19:55388000|55388287
ORF Type ORF8
Protein Length 71
Nucleotide Length 213
Protein Sequence MGRLASAVGKGLPLLVAIWAGEGWILAFSLLPTPSIGLGGGLWSVWAEPCSAPPPPGSHPQGQRHPAQPEA
Nucleotide Sequence TTGGGGAGACTGGCCAGTGCTGTGGGGAAGGGCCTCCCACTACTGGTTGCAATATGGGCTGGAGAGGGATGGATTCTTGCTTTCAGCCTACTCCCCACACCCAGCATTGGCCTAGGGGGCGGCTTGTGGAGTGTATGGGCTGAGCCTTGCTCTGCTCCCCCGCCCCCAGGCAGCCATCCGCAGGGCCAGCGCCATCCTGCGCAGCCAGAAGCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab