CircRNA Information

General Information
circRNA Basic Information
CircID chr19:55487122|55487283
Strand -
CircType exon
Host Gene ENSG00000090971.4;
Algorism CIRI2;
Sequence CCGTCAGCAGTGTGAAGTCTGTTGTGTTTGAGCTTCTCAGAGTGGAATGACTCCTTTTCCTTCCTGGCCCTCGGGGGCCTCTCGAGGTCAGCCTCTCCAACCCCTACCTCAGCTCCTGTCTGCACTGAGAAACCTCCCCGGGTGATGTCTGCAAAGTCTGTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:55487122|55487283 hsa-let-7b-5p 0 0 1
chr19:55487122|55487283 hsa-let-7b-3p 0 0 1
chr19:55487122|55487283 hsa-let-7c-5p 0 0 1
chr19:55487122|55487283 hsa-let-7c-3p 0 0 1
chr19:55487122|55487283 hsa-let-7d-5p 0 0 1
chr19:55487122|55487283 hsa-let-7d-3p 0 0 1
chr19:55487122|55487283 hsa-let-7e-5p 0 0 1
chr19:55487122|55487283 hsa-let-7e-3p 0 0 1
chr19:55487122|55487283 hsa-miR-98-5p 0 0 1
chr19:55487122|55487283 hsa-miR-98-3p 0 0 1
chr19:55487122|55487283 hsa-miR-148a-5p 0 0 1
chr19:55487122|55487283 hsa-miR-148a-3p 0 0 1
chr19:55487122|55487283 hsa-let-7g-5p 0 0 1
chr19:55487122|55487283 hsa-let-7g-3p 0 0 1
chr19:55487122|55487283 hsa-let-7i-5p 0 0 1
chr19:55487122|55487283 hsa-let-7i-3p 0 0 1
chr19:55487122|55487283 hsa-miR-152-5p 0 0 1
chr19:55487122|55487283 hsa-miR-152-3p 0 0 1
chr19:55487122|55487283 hsa-miR-185-5p 0 0 1
chr19:55487122|55487283 hsa-miR-185-3p 0 0 1
chr19:55487122|55487283 hsa-miR-377-5p 0 0 1
chr19:55487122|55487283 hsa-miR-377-3p 0 0 1
chr19:55487122|55487283 hsa-miR-148b-5p 0 0 1
chr19:55487122|55487283 hsa-miR-148b-3p 0 0 1
chr19:55487122|55487283 hsa-miR-202-5p 0 0 1
chr19:55487122|55487283 hsa-miR-202-3p 0 0 1
chr19:55487122|55487283 hsa-miR-620 0 0 1
chr19:55487122|55487283 hsa-miR-708-5p 0 0 1
chr19:55487122|55487283 hsa-miR-708-3p 0 0 1
chr19:55487122|55487283 hsa-miR-1253 0 0 1
chr19:55487122|55487283 hsa-miR-1270 0 0 1
chr19:55487122|55487283 hsa-miR-1252-5p 0 0 1
chr19:55487122|55487283 hsa-miR-1252-3p 0 0 1
chr19:55487122|55487283 hsa-miR-1324 0 0 1
chr19:55487122|55487283 hsa-miR-485-5p 0 1 1
chr19:55487122|55487283 hsa-miR-28-5p 0 0 1
chr19:55487122|55487283 hsa-miR-628-5p 0 0 1
chr19:55487122|55487283 hsa-miR-371-5p 0 0 1
chr19:55487122|55487283 hsa-let-7a 0 0 1
chr19:55487122|55487283 hsa-let-7f 0 0 1
chr19:55487122|55487283 hsa-miR-1300 0 0 1
chr19:55487122|55487283 hsa-miR-499-3p 0 0 1
chr19:55487122|55487283 hsa-miR-601 1 0 0
chr19:55487122|55487283 hsa-miR-298 1 0 0
chr19:55487122|55487283 hsa-miR-3141 1 0 0
chr19:55487122|55487283 hsa-miR-3166 1 1 0
chr19:55487122|55487283 hsa-miR-3665 1 0 0
chr19:55487122|55487283 hsa-miR-3929 0 1 0
chr19:55487122|55487283 hsa-miR-4458 0 1 0
chr19:55487122|55487283 hsa-miR-4476 0 1 0
chr19:55487122|55487283 hsa-miR-4478 0 1 0
chr19:55487122|55487283 hsa-miR-4487 1 0 0
chr19:55487122|55487283 hsa-miR-4507 1 0 0
chr19:55487122|55487283 hsa-miR-4514 1 0 0
chr19:55487122|55487283 hsa-miR-4651 1 0 0
chr19:55487122|55487283 hsa-miR-4656 1 0 0
chr19:55487122|55487283 hsa-miR-4673 1 0 0
chr19:55487122|55487283 hsa-miR-4688 1 0 0
chr19:55487122|55487283 hsa-miR-4739 1 0 0
chr19:55487122|55487283 hsa-miR-6079 1 0 0
chr19:55487122|55487283 hsa-miR-6085 1 0 0
chr19:55487122|55487283 hsa-miR-6165 1 0 0
chr19:55487122|55487283 hsa-miR-8077 1 0 0
chr19:55487122|55487283 hsa-miR-8089 1 0 0
chr19:55487122|55487283 hsa-miR-12131 0 1 0
chr19:55487122|55487283 hsa-miR-4433b-3p 1 0 0
chr19:55487122|55487283 hsa-miR-4700-3p 1 0 0
chr19:55487122|55487283 hsa-miR-1273h-3p 1 0 0
chr19:55487122|55487283 hsa-miR-6809-5p 1 1 0
chr19:55487122|55487283 hsa-miR-4433a-3p 1 1 0
chr19:55487122|55487283 hsa-miR-6765-5p 1 0 0
chr19:55487122|55487283 hsa-miR-671-5p 1 0 0
chr19:55487122|55487283 hsa-miR-6825-5p 1 1 0
chr19:55487122|55487283 hsa-miR-219a-1-3p 1 0 0
chr19:55487122|55487283 hsa-miR-6799-5p 1 1 0
chr19:55487122|55487283 hsa-miR-6089 1 0 0
chr19:55487122|55487283 hsa-miR-4653-3p 1 0 0
chr19:55487122|55487283 hsa-miR-4722-5p 1 0 0
chr19:55487122|55487283 hsa-miR-7160-5p 1 1 0
chr19:55487122|55487283 hsa-miR-6890-5p 1 0 0
chr19:55487122|55487283 hsa-miR-6727-5p 1 0 0
chr19:55487122|55487283 hsa-miR-6776-5p 1 0 0
chr19:55487122|55487283 hsa-miR-7845-5p 1 0 0
chr19:55487122|55487283 hsa-miR-6768-5p 1 0 0
chr19:55487122|55487283 hsa-miR-3180-3p 1 0 0
chr19:55487122|55487283 hsa-miR-6732-5p 1 0 0
chr19:55487122|55487283 hsa-miR-6782-5p 1 0 0
chr19:55487122|55487283 hsa-miR-5008-5p 1 1 0
chr19:55487122|55487283 hsa-miR-6786-5p 1 0 0
chr19:55487122|55487283 hsa-miR-1226-5p 1 0 0
chr19:55487122|55487283 hsa-miR-1229-5p 1 0 0
chr19:55487122|55487283 hsa-miR-193b-5p 1 0 0
chr19:55487122|55487283 hsa-miR-4640-5p 1 1 0
chr19:55487122|55487283 hsa-miR-296-3p 1 0 0
chr19:55487122|55487283 hsa-miR-6771-5p 1 0 0
chr19:55487122|55487283 hsa-miR-3202 0 1 0
chr19:55487122|55487283 hsa-miR-3160-3p 1 0 0
chr19:55487122|55487283 hsa-miR-149-3p 1 0 0
chr19:55487122|55487283 hsa-miR-6824-5p 1 0 0
chr19:55487122|55487283 hsa-miR-6789-5p 1 0 0
chr19:55487122|55487283 hsa-miR-6781-5p 1 0 0
chr19:55487122|55487283 hsa-miR-6895-5p 1 1 0
chr19:55487122|55487283 hsa-miR-423-5p 1 0 0
chr19:55487122|55487283 hsa-let-7a-5p 0 1 0
chr19:55487122|55487283 hsa-miR-6832-5p 1 0 0
chr19:55487122|55487283 hsa-miR-483-5p 1 0 0
chr19:55487122|55487283 hsa-miR-6767-5p 1 0 0
chr19:55487122|55487283 hsa-miR-3680-3p 1 0 0
chr19:55487122|55487283 hsa-miR-6790-3p 0 1 0
chr19:55487122|55487283 hsa-miR-499b-5p 0 1 0
chr19:55487122|55487283 hsa-miR-1207-5p 1 0 0
chr19:55487122|55487283 hsa-miR-4763-3p 1 0 0
chr19:55487122|55487283 hsa-miR-6787-5p 1 0 0
chr19:55487122|55487283 hsa-miR-6893-5p 1 0 0
chr19:55487122|55487283 hsa-miR-6726-5p 1 0 0
chr19:55487122|55487283 hsa-miR-6743-5p 1 0 0
chr19:55487122|55487283 hsa-miR-6752-5p 1 0 0
chr19:55487122|55487283 hsa-miR-6803-5p 1 1 0
chr19:55487122|55487283 hsa-miR-6813-5p 1 0 0
chr19:55487122|55487283 hsa-miR-6851-5p 1 0 0
chr19:55487122|55487283 hsa-miR-6722-3p 1 0 0
chr19:55487122|55487283 hsa-miR-6751-5p 1 0 0
chr19:55487122|55487283 hsa-miR-6779-5p 1 0 0
chr19:55487122|55487283 hsa-miR-6797-5p 1 0 0
chr19:55487122|55487283 hsa-miR-6808-5p 1 0 0
chr19:55487122|55487283 hsa-miR-6879-5p 1 0 0
chr19:55487122|55487283 hsa-miR-5196-5p 1 0 0
chr19:55487122|55487283 hsa-miR-328-5p 1 0 0
chr19:55487122|55487283 hsa-miR-4649-5p 1 0 0
chr19:55487122|55487283 hsa-miR-4726-5p 1 1 0
chr19:55487122|55487283 hsa-miR-6729-5p 1 0 0
chr19:55487122|55487283 hsa-miR-6777-5p 1 0 0
chr19:55487122|55487283 hsa-miR-6846-5p 1 0 0
chr19:55487122|55487283 hsa-miR-6848-5p 1 0 0
chr19:55487122|55487283 hsa-miR-6858-5p 1 0 0
chr19:55487122|55487283 hsa-miR-6889-5p 0 1 0
chr19:55487122|55487283 hsa-miR-939-5p 1 0 0
chr19:55487122|55487283 hsa-miR-6511a-5p 1 0 0
chr19:55487122|55487283 hsa-miR-6511b-5p 1 1 0
chr19:55487122|55487283 hsa-miR-3940-5p 1 0 0
chr19:55487122|55487283 hsa-miR-6856-5p 1 0 0
chr19:55487122|55487283 hsa-miR-6855-5p 1 1 0
chr19:55487122|55487283 hsa-miR-4646-5p 1 0 0
chr19:55487122|55487283 hsa-miR-6876-5p 0 1 0
chr19:55487122|55487283 hsa-miR-5591-5p 0 1 0
chr19:55487122|55487283 hsa-miR-6791-5p 1 0 0
chr19:55487122|55487283 hsa-miR-6762-5p 1 0 0
chr19:55487122|55487283 hsa-miR-6837-5p 1 0 0
chr19:55487122|55487283 hsa-miR-6806-3p 0 1 0
chr19:55487122|55487283 hsa-miR-4653-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:55487122|55487283
ORF Type ORF1
Protein Length 48
Nucleotide Length 144
Protein Sequence MLCLSFSEWNDSFSFLALGGLSRSASPTPTSAPVCTEKPPRVMSAKSV
Nucleotide Sequence CTGTTGTGTTTGAGCTTCTCAGAGTGGAATGACTCCTTTTCCTTCCTGGCCCTCGGGGGCCTCTCGAGGTCAGCCTCTCCAACCCCTACCTCAGCTCCTGTCTGCACTGAGAAACCTCCCCGGGTGATGTCTGCAAAGTCTGTG
CircID chr19:55487122|55487283
ORF Type ORF2
Protein Length 32
Nucleotide Length 99
Protein Sequence MTPFPSWPSGASRGQPLQPLPQLLSALRNLPG
Nucleotide Sequence ATGACTCCTTTTCCTTCCTGGCCCTCGGGGGCCTCTCGAGGTCAGCCTCTCCAACCCCTACCTCAGCTCCTGTCTGCACTGAGAAACCTCCCCGGGTGA
CircID chr19:55487122|55487283
ORF Type ORF3
Protein Length 33
Nucleotide Length 99
Protein Sequence MERLTSRGPRGPGRKRSHSTLRSSNTTDFTLLT
Nucleotide Sequence TTGGAGAGGCTGACCTCGAGAGGCCCCCGAGGGCCAGGAAGGAAAAGGAGTCATTCCACTCTGAGAAGCTCAAACACAACAGACTTCACACTGCTGACG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab