CircRNA Information

General Information
circRNA Basic Information
CircID chr19:55667968|55668135
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CCCACCCCTTCTCTGACAGCCACCCAGGCAAGGCTCCCATTAAAGCTCAGTCCCGGCCGGGCGCGGGGGCTCACGCCTGTAATCTCAGCACTTTGGGAGGCCAAGGCGGGCAGATCACAAGGTCAAGAGATAAGACCATCCTGTCCAACATGGTGAAACCCCGTCTCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:55667968|55668135 hsa-miR-17-5p 0 0 1
chr19:55667968|55668135 hsa-miR-17-3p 0 0 1
chr19:55667968|55668135 hsa-miR-20a-5p 0 0 1
chr19:55667968|55668135 hsa-miR-20a-3p 0 0 1
chr19:55667968|55668135 hsa-miR-93-5p 0 0 1
chr19:55667968|55668135 hsa-miR-93-3p 0 0 1
chr19:55667968|55668135 hsa-miR-106a-5p 0 0 1
chr19:55667968|55668135 hsa-miR-106a-3p 0 0 1
chr19:55667968|55668135 hsa-miR-192-5p 0 0 1
chr19:55667968|55668135 hsa-miR-192-3p 0 0 1
chr19:55667968|55668135 hsa-miR-197-5p 0 0 1
chr19:55667968|55668135 hsa-miR-197-3p 0 0 1
chr19:55667968|55668135 hsa-miR-215-5p 0 0 1
chr19:55667968|55668135 hsa-miR-215-3p 0 0 1
chr19:55667968|55668135 hsa-miR-150-5p 0 0 1
chr19:55667968|55668135 hsa-miR-150-3p 0 0 1
chr19:55667968|55668135 hsa-miR-106b-5p 0 0 1
chr19:55667968|55668135 hsa-miR-106b-3p 0 0 1
chr19:55667968|55668135 hsa-miR-302a-5p 0 0 1
chr19:55667968|55668135 hsa-miR-302a-3p 0 0 1
chr19:55667968|55668135 hsa-miR-302b-5p 0 0 1
chr19:55667968|55668135 hsa-miR-302b-3p 0 0 1
chr19:55667968|55668135 hsa-miR-302c-5p 0 0 1
chr19:55667968|55668135 hsa-miR-302c-3p 0 0 1
chr19:55667968|55668135 hsa-miR-302d-5p 0 0 1
chr19:55667968|55668135 hsa-miR-302d-3p 0 0 1
chr19:55667968|55668135 hsa-miR-372-5p 0 0 1
chr19:55667968|55668135 hsa-miR-372-3p 0 0 1
chr19:55667968|55668135 hsa-miR-373-5p 0 0 1
chr19:55667968|55668135 hsa-miR-373-3p 0 0 1
chr19:55667968|55668135 hsa-miR-20b-5p 0 0 1
chr19:55667968|55668135 hsa-miR-20b-3p 0 0 1
chr19:55667968|55668135 hsa-miR-520e-5p 0 0 1
chr19:55667968|55668135 hsa-miR-520e-3p 0 0 1
chr19:55667968|55668135 hsa-miR-520b-5p 0 0 1
chr19:55667968|55668135 hsa-miR-520b-3p 0 0 1
chr19:55667968|55668135 hsa-miR-519d-5p 0 0 1
chr19:55667968|55668135 hsa-miR-519d-3p 0 0 1
chr19:55667968|55668135 hsa-miR-520g-5p 0 0 1
chr19:55667968|55668135 hsa-miR-520g-3p 0 0 1
chr19:55667968|55668135 hsa-miR-520h 0 0 1
chr19:55667968|55668135 hsa-miR-608 0 0 1
chr19:55667968|55668135 hsa-miR-661 0 1 1
chr19:55667968|55668135 hsa-miR-920 0 0 1
chr19:55667968|55668135 hsa-miR-1293 1 0 1
chr19:55667968|55668135 hsa-miR-302e 0 0 1
chr19:55667968|55668135 hsa-miR-1225-3p 1 1 1
chr19:55667968|55668135 hsa-miR-512-3p 0 0 1
chr19:55667968|55668135 hsa-miR-483-5p 0 0 1
chr19:55667968|55668135 hsa-miR-324-3p 0 0 1
chr19:55667968|55668135 hsa-miR-520d-3p 0 0 1
chr19:55667968|55668135 hsa-miR-520a-3p 0 0 1
chr19:55667968|55668135 hsa-miR-520c-3p 0 0 1
chr19:55667968|55668135 hsa-miR-1233 0 0 1
chr19:55667968|55668135 hsa-miR-1254 0 0 1
chr19:55667968|55668135 hsa-miR-346 0 1 0
chr19:55667968|55668135 hsa-miR-663a 1 0 0
chr19:55667968|55668135 hsa-miR-762 1 0 0
chr19:55667968|55668135 hsa-miR-1303 0 1 0
chr19:55667968|55668135 hsa-miR-2861 1 0 0
chr19:55667968|55668135 hsa-miR-3195 1 0 0
chr19:55667968|55668135 hsa-miR-3943 0 1 0
chr19:55667968|55668135 hsa-miR-4479 1 0 0
chr19:55667968|55668135 hsa-miR-4656 1 0 0
chr19:55667968|55668135 hsa-miR-4741 1 1 0
chr19:55667968|55668135 hsa-miR-5194 1 0 0
chr19:55667968|55668135 hsa-miR-5787 1 0 0
chr19:55667968|55668135 hsa-miR-6090 1 0 0
chr19:55667968|55668135 hsa-miR-6745 1 0 0
chr19:55667968|55668135 hsa-miR-6836-3p 1 0 0
chr19:55667968|55668135 hsa-miR-212-5p 0 1 0
chr19:55667968|55668135 hsa-miR-4687-3p 0 1 0
chr19:55667968|55668135 hsa-miR-6089 1 0 0
chr19:55667968|55668135 hsa-miR-3064-5p 1 0 0
chr19:55667968|55668135 hsa-miR-4474-3p 1 0 0
chr19:55667968|55668135 hsa-miR-6776-5p 1 1 0
chr19:55667968|55668135 hsa-miR-1915-5p 0 1 0
chr19:55667968|55668135 hsa-miR-6871-5p 1 1 0
chr19:55667968|55668135 hsa-miR-3180-3p 1 0 0
chr19:55667968|55668135 hsa-miR-6827-5p 0 1 0
chr19:55667968|55668135 hsa-miR-6782-5p 0 1 0
chr19:55667968|55668135 hsa-miR-4707-3p 0 1 0
chr19:55667968|55668135 hsa-miR-193b-5p 1 0 0
chr19:55667968|55668135 hsa-miR-889-5p 1 0 0
chr19:55667968|55668135 hsa-miR-3677-3p 1 0 0
chr19:55667968|55668135 hsa-miR-6749-5p 1 0 0
chr19:55667968|55668135 hsa-miR-6789-5p 1 0 0
chr19:55667968|55668135 hsa-miR-4707-5p 1 0 0
chr19:55667968|55668135 hsa-miR-6738-3p 0 1 0
chr19:55667968|55668135 hsa-miR-3179 0 1 0
chr19:55667968|55668135 hsa-miR-6850-3p 0 1 0
chr19:55667968|55668135 hsa-miR-6769b-5p 1 0 0
chr19:55667968|55668135 hsa-miR-6756-5p 1 0 0
chr19:55667968|55668135 hsa-miR-6774-5p 1 0 0
chr19:55667968|55668135 hsa-miR-6846-5p 1 0 0
chr19:55667968|55668135 hsa-miR-6848-5p 1 0 0
chr19:55667968|55668135 hsa-miR-4758-5p 1 0 0
chr19:55667968|55668135 hsa-miR-6791-3p 1 0 0
chr19:55667968|55668135 hsa-miR-6724-5p 1 0 0
chr19:55667968|55668135 hsa-miR-4757-5p 1 0 0
chr19:55667968|55668135 hsa-miR-6744-3p 1 0 0
chr19:55667968|55668135 hsa-miR-6848-3p 1 0 0
chr19:55667968|55668135 hsa-miR-619-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:55667968|55668135
ORF Type ORF1
Protein Length 47
Nucleotide Length 144
Protein Sequence MTATQARLPLKLSPGRARGLTPVISALWEAKAGRSQGQEIRPSCPTW
Nucleotide Sequence CTGACAGCCACCCAGGCAAGGCTCCCATTAAAGCTCAGTCCCGGCCGGGCGCGGGGGCTCACGCCTGTAATCTCAGCACTTTGGGAGGCCAAGGCGGGCAGATCACAAGGTCAAGAGATAAGACCATCCTGTCCAACATGGTGA
CircID chr19:55667968|55668135
ORF Type ORF2
Protein Length 25
Nucleotide Length 75
Protein Sequence MGGQGGQITRSRDKTILSNMVKPRL
Nucleotide Sequence TTGGGAGGCCAAGGCGGGCAGATCACAAGGTCAAGAGATAAGACCATCCTGTCCAACATGGTGAAACCCCGTCTC
CircID chr19:55667968|55668135
ORF Type ORF3
Protein Length 37
Nucleotide Length 111
Protein Sequence MPALASQSAEITGVSPRARPGLSFNGSLAWVAVREGV
Nucleotide Sequence CTGCCCGCCTTGGCCTCCCAAAGTGCTGAGATTACAGGCGTGAGCCCCCGCGCCCGGCCGGGACTGAGCTTTAATGGGAGCCTTGCCTGGGTGGCTGTCAGAGAAGGGGTG
CircID chr19:55667968|55668135
ORF Type ORF4
Protein Length 26
Nucleotide Length 81
Protein Sequence MLDRMVLSLDLVICPPWPPKVLRLQA
Nucleotide Sequence ATGTTGGACAGGATGGTCTTATCTCTTGACCTTGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGAGATTACAGGCGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab