CircRNA Information

General Information
circRNA Basic Information
CircID chr19:55668245|55668586
Strand +
CircType exon
Host Gene ENSG00000063244.11;
Algorism CIRI2;
Sequence CTGGTCATCGTTCAGGTAGTTGGGTAAGCCCCCGATGAACAGCTTGTGGGCAGAGTCGGGGACCACAGTGGACACAACCCCTATGGGTAGAGAAGAGGAGGACTTCAATTCCAGTACCAGGTTATCTCCCAAAACCTGGACAGTCTACGGCGAGCTCCTCAATTGCCAAAGAGAACACTTCCTGCCTGATCTGACGAGGGAGGGGTCGCCACGTGCCCACCCCACCCCAGCCTTATCTGACCAGTGAGGGTCCTGGGCAGTGGCACACAGAGGCTCCTCGGGGAGAACGCACCATGTCTCCCAAATCTGCCCAGCCTCAGGGGAACCTCAAACTAGAACATC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:55668245|55668586 hsa-miR-96-5p 0 0 1
chr19:55668245|55668586 hsa-miR-96-3p 0 0 1
chr19:55668245|55668586 hsa-miR-198 0 0 1
chr19:55668245|55668586 hsa-miR-182-5p 0 0 1
chr19:55668245|55668586 hsa-miR-182-3p 0 0 1
chr19:55668245|55668586 hsa-miR-573 0 0 1
chr19:55668245|55668586 hsa-miR-592 0 0 1
chr19:55668245|55668586 hsa-miR-599 0 0 1
chr19:55668245|55668586 hsa-miR-608 1 0 1
chr19:55668245|55668586 hsa-miR-612 0 0 1
chr19:55668245|55668586 hsa-miR-649 0 0 1
chr19:55668245|55668586 hsa-miR-660-5p 0 0 1
chr19:55668245|55668586 hsa-miR-660-3p 0 0 1
chr19:55668245|55668586 hsa-miR-1271-5p 0 0 1
chr19:55668245|55668586 hsa-miR-1271-3p 0 0 1
chr19:55668245|55668586 hsa-miR-675-5p 0 0 1
chr19:55668245|55668586 hsa-miR-675-3p 0 0 1
chr19:55668245|55668586 hsa-miR-541-5p 0 0 1
chr19:55668245|55668586 hsa-miR-541-3p 0 0 1
chr19:55668245|55668586 hsa-miR-708-5p 0 0 1
chr19:55668245|55668586 hsa-miR-708-3p 0 0 1
chr19:55668245|55668586 hsa-miR-940 0 0 1
chr19:55668245|55668586 hsa-miR-942-5p 0 0 1
chr19:55668245|55668586 hsa-miR-942-3p 0 0 1
chr19:55668245|55668586 hsa-miR-1227-5p 0 0 1
chr19:55668245|55668586 hsa-miR-1227-3p 0 0 1
chr19:55668245|55668586 hsa-miR-1206 0 0 1
chr19:55668245|55668586 hsa-miR-1304-5p 0 0 1
chr19:55668245|55668586 hsa-miR-1304-3p 0 0 1
chr19:55668245|55668586 hsa-miR-1243 0 0 1
chr19:55668245|55668586 hsa-miR-1224-5p 0 0 1
chr19:55668245|55668586 hsa-miR-485-5p 0 0 1
chr19:55668245|55668586 hsa-miR-490-3p 0 0 1
chr19:55668245|55668586 hsa-miR-654-5p 0 0 1
chr19:55668245|55668586 hsa-miR-28-5p 0 0 1
chr19:55668245|55668586 hsa-miR-331-3p 0 0 1
chr19:55668245|55668586 hsa-miR-324-3p 1 0 1
chr19:55668245|55668586 hsa-miR-342-5p 0 0 1
chr19:55668245|55668586 hsa-miR-125a-5p 0 0 1
chr19:55668245|55668586 hsa-miR-151-5p 0 0 1
chr19:55668245|55668586 hsa-miR-125b 0 0 1
chr19:55668245|55668586 hsa-miR-9 0 0 1
chr19:55668245|55668586 hsa-miR-1285 0 0 1
chr19:55668245|55668586 hsa-miR-1273 0 0 1
chr19:55668245|55668586 hsa-miR-151-3p 0 0 1
chr19:55668245|55668586 hsa-miR-762 1 0 0
chr19:55668245|55668586 hsa-miR-3132 1 0 0
chr19:55668245|55668586 hsa-miR-3147 1 0 0
chr19:55668245|55668586 hsa-miR-3937 1 0 0
chr19:55668245|55668586 hsa-miR-4436a 1 0 0
chr19:55668245|55668586 hsa-miR-4514 1 0 0
chr19:55668245|55668586 hsa-miR-4522 1 0 0
chr19:55668245|55668586 hsa-miR-1587 1 0 0
chr19:55668245|55668586 hsa-miR-4651 1 0 0
chr19:55668245|55668586 hsa-miR-4673 1 0 0
chr19:55668245|55668586 hsa-miR-4739 1 0 0
chr19:55668245|55668586 hsa-miR-5787 1 0 0
chr19:55668245|55668586 hsa-miR-6128 1 0 0
chr19:55668245|55668586 hsa-miR-6131 1 0 0
chr19:55668245|55668586 hsa-miR-6765-5p 1 0 0
chr19:55668245|55668586 hsa-miR-1972 1 0 0
chr19:55668245|55668586 hsa-miR-125a-3p 1 0 0
chr19:55668245|55668586 hsa-miR-139-3p 1 0 0
chr19:55668245|55668586 hsa-miR-6089 1 0 0
chr19:55668245|55668586 hsa-miR-4722-5p 1 0 0
chr19:55668245|55668586 hsa-miR-6721-5p 1 0 0
chr19:55668245|55668586 hsa-miR-3180-3p 1 0 0
chr19:55668245|55668586 hsa-miR-877-3p 1 0 0
chr19:55668245|55668586 hsa-miR-4655-3p 1 0 0
chr19:55668245|55668586 hsa-miR-6782-5p 1 0 0
chr19:55668245|55668586 hsa-miR-6728-3p 1 0 0
chr19:55668245|55668586 hsa-miR-6763-3p 1 0 0
chr19:55668245|55668586 hsa-miR-1229-5p 1 0 0
chr19:55668245|55668586 hsa-miR-1228-5p 1 0 0
chr19:55668245|55668586 hsa-miR-4787-5p 1 0 0
chr19:55668245|55668586 hsa-miR-1266-3p 1 0 0
chr19:55668245|55668586 hsa-miR-7112-5p 1 0 0
chr19:55668245|55668586 hsa-miR-6515-3p 1 0 0
chr19:55668245|55668586 hsa-miR-1207-5p 1 0 0
chr19:55668245|55668586 hsa-miR-4763-3p 1 0 0
chr19:55668245|55668586 hsa-miR-6816-5p 1 0 0
chr19:55668245|55668586 hsa-miR-6893-5p 1 0 0
chr19:55668245|55668586 hsa-miR-5001-5p 1 0 0
chr19:55668245|55668586 hsa-miR-6754-5p 1 0 0
chr19:55668245|55668586 hsa-miR-6756-5p 1 0 0
chr19:55668245|55668586 hsa-miR-6803-5p 1 0 0
chr19:55668245|55668586 hsa-miR-6722-3p 1 0 0
chr19:55668245|55668586 hsa-miR-6808-5p 1 0 0
chr19:55668245|55668586 hsa-miR-6879-5p 1 0 0
chr19:55668245|55668586 hsa-miR-3620-5p 1 0 0
chr19:55668245|55668586 hsa-miR-4685-5p 1 0 0
chr19:55668245|55668586 hsa-miR-4436b-3p 1 0 0
chr19:55668245|55668586 hsa-miR-6791-5p 1 0 0
chr19:55668245|55668586 hsa-miR-3059-5p 1 0 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:55668245|55668586
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MGSGTQRLLGENAPCLPNLPSLRGTSN
Nucleotide Sequence CTGGGCAGTGGCACACAGAGGCTCCTCGGGGAGAACGCACCATGTCTCCCAAATCTGCCCAGCCTCAGGGGAACCTCAAACTAG
CircID chr19:55668245|55668586
ORF Type ORF2
Protein Length 75
Nucleotide Length 228
Protein Sequence MGKPPMNSLWAESGTTVDTTPMGREEEDFNSSTRLSPKTWTVYGELLNCQREHFLPDLTREGSPRAHPTPALSDQ
Nucleotide Sequence TTGGGTAAGCCCCCGATGAACAGCTTGTGGGCAGAGTCGGGGACCACAGTGGACACAACCCCTATGGGTAGAGAAGAGGAGGACTTCAATTCCAGTACCAGGTTATCTCCCAAAACCTGGACAGTCTACGGCGAGCTCCTCAATTGCCAAAGAGAACACTTCCTGCCTGATCTGACGAGGGAGGGGTCGCCACGTGCCCACCCCACCCCAGCCTTATCTGACCAGTGA
CircID chr19:55668245|55668586
ORF Type ORF3
Protein Length 35
Nucleotide Length 105
Protein Sequence MTSEGPGQWHTEAPRGERTMSPKSAQPQGNLKLEH
Nucleotide Sequence CTGACCAGTGAGGGTCCTGGGCAGTGGCACACAGAGGCTCCTCGGGGAGAACGCACCATGTCTCCCAAATCTGCCCAGCCTCAGGGGAACCTCAAACTAGAACAT
CircID chr19:55668245|55668586
ORF Type ORF4
Protein Length 41
Nucleotide Length 126
Protein Sequence MCATAQDPHWSDKAGVGWARGDPSLVRSGRKCSLWQLRSSP
Nucleotide Sequence CTGTGTGCCACTGCCCAGGACCCTCACTGGTCAGATAAGGCTGGGGTGGGGTGGGCACGTGGCGACCCCTCCCTCGTCAGATCAGGCAGGAAGTGTTCTCTTTGGCAATTGAGGAGCTCGCCGTAG
CircID chr19:55668245|55668586
ORF Type ORF5
Protein Length 44
Nucleotide Length 132
Protein Sequence MGDNLVLELKSSSSLPIGVVSTVVPDSAHKLFIGGLPNYLNDDQ
Nucleotide Sequence TTGGGAGATAACCTGGTACTGGAATTGAAGTCCTCCTCTTCTCTACCCATAGGGGTTGTGTCCACTGTGGTCCCCGACTCTGCCCACAAGCTGTTCATCGGGGGCTTACCCAACTACCTGAACGATGACCAG
CircID chr19:55668245|55668586
ORF Type ORF6
Protein Length 53
Nucleotide Length 162
Protein Sequence MRLGRFGRHGAFSPRSLCVPLPRTLTGQIRLGWGGHVATPPSSDQAGSVLFGN
Nucleotide Sequence CTGAGGCTGGGCAGATTTGGGAGACATGGTGCGTTCTCCCCGAGGAGCCTCTGTGTGCCACTGCCCAGGACCCTCACTGGTCAGATAAGGCTGGGGTGGGGTGGGCACGTGGCGACCCCTCCCTCGTCAGATCAGGCAGGAAGTGTTCTCTTTGGCAATTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab