CircRNA Information

General Information
circRNA Basic Information
CircID chr19:56547598|56547894
Strand +
CircType exon
Host Gene ENSG00000196867.6;
Algorism CIRI2;
Sequence CAGGCTCTTGTCATCTTTCGCTTCACTGTCCAAGGCTCTTTTCCTTGTTCCAACGAGGAGATCACATCGGGCTTAGAAACACAAAGTCCTAGACACATAAAAAACAACCTGGTCATACTGTGTGGCTGTCCAGACTGAGATGCAGTCCCCTTGGCTTGACGCAAGAGGGCAGTGCAGGTCTGGGTGATAAAGGCATGAAAGGCTTCTTAGTCCAGGACGTGGGTAGGGTGAGGGGTGGGAAAAGGGGTGGGAGCCCTTACCCAGCGATGCCAGGTTCCTGTAGTTCTCCAACATCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:56547598|56547894 hsa-miR-217-5p 0 0 1
chr19:56547598|56547894 hsa-miR-217-3p 0 0 1
chr19:56547598|56547894 hsa-miR-144-5p 0 0 1
chr19:56547598|56547894 hsa-miR-144-3p 0 0 1
chr19:56547598|56547894 hsa-miR-146a-5p 0 0 1
chr19:56547598|56547894 hsa-miR-146a-3p 0 0 1
chr19:56547598|56547894 hsa-miR-335-5p 0 0 1
chr19:56547598|56547894 hsa-miR-335-3p 0 0 1
chr19:56547598|56547894 hsa-miR-422a 0 0 1
chr19:56547598|56547894 hsa-miR-555 0 0 1
chr19:56547598|56547894 hsa-miR-599 0 0 1
chr19:56547598|56547894 hsa-miR-620 0 0 1
chr19:56547598|56547894 hsa-miR-622 0 0 1
chr19:56547598|56547894 hsa-miR-662 0 0 1
chr19:56547598|56547894 hsa-miR-873-5p 0 0 1
chr19:56547598|56547894 hsa-miR-873-3p 0 0 1
chr19:56547598|56547894 hsa-miR-1270 0 0 1
chr19:56547598|56547894 hsa-miR-1276 0 0 1
chr19:56547598|56547894 hsa-miR-1288-5p 0 0 1
chr19:56547598|56547894 hsa-miR-1288-3p 0 0 1
chr19:56547598|56547894 hsa-miR-1306-5p 0 0 1
chr19:56547598|56547894 hsa-miR-1306-3p 0 0 1
chr19:56547598|56547894 hsa-miR-532-3p 1 0 1
chr19:56547598|56547894 hsa-miR-490-3p 0 0 1
chr19:56547598|56547894 hsa-miR-1224-3p 1 0 1
chr19:56547598|56547894 hsa-miR-532-5p 0 0 1
chr19:56547598|56547894 hsa-miR-188-3p 0 0 1
chr19:56547598|56547894 hsa-miR-576-5p 0 0 1
chr19:56547598|56547894 hsa-miR-146b-5p 0 0 1
chr19:56547598|56547894 hsa-miR-1260 0 0 1
chr19:56547598|56547894 hsa-miR-1280 0 0 1
chr19:56547598|56547894 hsa-miR-378 0 0 1
chr19:56547598|56547894 hsa-miR-184 1 0 0
chr19:56547598|56547894 hsa-miR-638 1 0 0
chr19:56547598|56547894 hsa-miR-1260a 1 0 0
chr19:56547598|56547894 hsa-miR-2861 1 0 0
chr19:56547598|56547894 hsa-miR-3138 1 0 0
chr19:56547598|56547894 hsa-miR-3147 1 0 0
chr19:56547598|56547894 hsa-miR-1260b 1 0 0
chr19:56547598|56547894 hsa-miR-4298 1 0 0
chr19:56547598|56547894 hsa-miR-4689 1 0 0
chr19:56547598|56547894 hsa-miR-6090 1 0 0
chr19:56547598|56547894 hsa-miR-8078 1 0 0
chr19:56547598|56547894 hsa-miR-12120 1 0 0
chr19:56547598|56547894 hsa-miR-6749-3p 1 0 0
chr19:56547598|56547894 hsa-miR-6765-5p 1 0 0
chr19:56547598|56547894 hsa-miR-766-3p 1 0 0
chr19:56547598|56547894 hsa-miR-6892-3p 1 0 0
chr19:56547598|56547894 hsa-miR-150-5p 1 0 0
chr19:56547598|56547894 hsa-miR-7114-5p 1 0 0
chr19:56547598|56547894 hsa-miR-7110-3p 1 0 0
chr19:56547598|56547894 hsa-miR-7108-3p 1 0 0
chr19:56547598|56547894 hsa-miR-4707-3p 1 0 0
chr19:56547598|56547894 hsa-miR-6803-3p 1 0 0
chr19:56547598|56547894 hsa-miR-7113-3p 1 0 0
chr19:56547598|56547894 hsa-miR-4638-3p 1 0 0
chr19:56547598|56547894 hsa-miR-6830-5p 1 0 0
chr19:56547598|56547894 hsa-miR-211-5p 1 0 0
chr19:56547598|56547894 hsa-miR-7106-3p 1 0 0
chr19:56547598|56547894 hsa-miR-6785-3p 1 0 0
chr19:56547598|56547894 hsa-miR-4732-3p 1 0 0
chr19:56547598|56547894 hsa-miR-339-3p 1 0 0
chr19:56547598|56547894 hsa-miR-6741-3p 1 0 0
chr19:56547598|56547894 hsa-miR-1292-3p 1 0 0
chr19:56547598|56547894 hsa-miR-4433a-5p 1 0 0
chr19:56547598|56547894 hsa-miR-1229-3p 1 0 0
chr19:56547598|56547894 hsa-miR-4433b-5p 1 0 0
chr19:56547598|56547894 hsa-miR-3162-3p 1 0 0
chr19:56547598|56547894 hsa-miR-6774-5p 1 0 0
chr19:56547598|56547894 hsa-miR-4685-3p 1 0 0
chr19:56547598|56547894 hsa-miR-6784-3p 1 0 0
chr19:56547598|56547894 hsa-miR-6862-3p 1 0 0
chr19:56547598|56547894 hsa-miR-10401-3p 1 0 0
chr19:56547598|56547894 hsa-miR-483-3p 1 0 0
chr19:56547598|56547894 hsa-miR-6511b-3p 1 0 0
chr19:56547598|56547894 hsa-miR-1295b-5p 1 0 0
chr19:56547598|56547894 hsa-miR-4769-3p 1 0 0
chr19:56547598|56547894 hsa-miR-6814-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:56547598|56547894
ORF Type ORF1
Protein Length 57
Nucleotide Length 171
Protein Sequence MSRLRCSPLGLTQEGSAGLGDKGMKGFLVQDVGRVRGGKRGGSPYPAMPGSCSSPTS
Nucleotide Sequence CTGTCCAGACTGAGATGCAGTCCCCTTGGCTTGACGCAAGAGGGCAGTGCAGGTCTGGGTGATAAAGGCATGAAAGGCTTCTTAGTCCAGGACGTGGGTAGGGTGAGGGGTGGGAAAAGGGGTGGGAGCCCTTACCCAGCGATGCCAGGTTCCTGTAGTTCTCCAACATCA
CircID chr19:56547598|56547894
ORF Type ORF2
Protein Length 73
Nucleotide Length 222
Protein Sequence MLENYRNLASLGKGSHPFSHPSPYPRPGLRSLSCLYHPDLHCPLASSQGDCISVWTATQYDQVVFYVSRTLCF
Nucleotide Sequence ATGTTGGAGAACTACAGGAACCTGGCATCGCTGGGTAAGGGCTCCCACCCCTTTTCCCACCCCTCACCCTACCCACGTCCTGGACTAAGAAGCCTTTCATGCCTTTATCACCCAGACCTGCACTGCCCTCTTGCGTCAAGCCAAGGGGACTGCATCTCAGTCTGGACAGCCACACAGTATGACCAGGTTGTTTTTTATGTGTCTAGGACTTTGTGTTTCTAA
CircID chr19:56547598|56547894
ORF Type ORF3
Protein Length 54
Nucleotide Length 162
Protein Sequence MRQAKGTASQSGQPHSMTRLFFMCLGLCVSKPDVISSLEQGKEPWTVKRKMTRA
Nucleotide Sequence TTGCGTCAAGCCAAGGGGACTGCATCTCAGTCTGGACAGCCACACAGTATGACCAGGTTGTTTTTTATGTGTCTAGGACTTTGTGTTTCTAAGCCCGATGTGATCTCCTCGTTGGAACAAGGAAAAGAGCCTTGGACAGTGAAGCGAAAGATGACAAGAGCC
CircID chr19:56547598|56547894
ORF Type ORF4
Protein Length 27
Nucleotide Length 84
Protein Sequence MPLSPRPALPSCVKPRGLHLSLDSHTV
Nucleotide Sequence ATGCCTTTATCACCCAGACCTGCACTGCCCTCTTGCGTCAAGCCAAGGGGACTGCATCTCAGTCTGGACAGCCACACAGTATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab