CircRNA Information

General Information
circRNA Basic Information
CircID chr19:5667135|5667450
Strand +
CircType exon
Host Gene ENSG00000160633.11;
Algorism CIRI2;
Sequence CTTGCCACCTCTTGTGATCCCTGTCCATCATGCCCCCGTCGGCCGTGCCCTGCCATGACCGGTCATCCTCTCTTCGGCCATGGTCCCCCCAGTCACGTCTGCCCCTTGAAAGAGAGACATCTCTGATTTGGATTGCCCCCATCTCTGGCTCTTGTGCTAATAACTGTGGCGGCTTCTGGAGAGTGAATCCCTCTGTGTTTCCCACCCTGTGCCCACATCCCAGCGACTTGCGGGCCCCCTTGTGGGCGGGGGGGGGGTCAGGTACTGTCGGGTGTGGGACACAAACCTGGGGGGAGGAGGCAGCCCCCGGCCCTCG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:5667135|5667450 hsa-miR-31-5p 0 0 1
chr19:5667135|5667450 hsa-miR-31-3p 0 0 1
chr19:5667135|5667450 hsa-miR-134-5p 0 0 1
chr19:5667135|5667450 hsa-miR-134-3p 0 0 1
chr19:5667135|5667450 hsa-miR-335-5p 0 0 1
chr19:5667135|5667450 hsa-miR-335-3p 0 0 1
chr19:5667135|5667450 hsa-miR-498-5p 0 0 1
chr19:5667135|5667450 hsa-miR-498-3p 0 0 1
chr19:5667135|5667450 hsa-miR-564 0 0 1
chr19:5667135|5667450 hsa-miR-591 0 0 1
chr19:5667135|5667450 hsa-miR-592 0 0 1
chr19:5667135|5667450 hsa-miR-593-5p 0 0 1
chr19:5667135|5667450 hsa-miR-593-3p 0 0 1
chr19:5667135|5667450 hsa-miR-599 0 0 1
chr19:5667135|5667450 hsa-miR-637 1 0 1
chr19:5667135|5667450 hsa-miR-766-5p 0 0 1
chr19:5667135|5667450 hsa-miR-766-3p 0 0 1
chr19:5667135|5667450 hsa-miR-513b-5p 0 0 1
chr19:5667135|5667450 hsa-miR-513b-3p 0 0 1
chr19:5667135|5667450 hsa-miR-486-3p 1 0 1
chr19:5667135|5667450 hsa-miR-299-3p 0 0 1
chr19:5667135|5667450 hsa-miR-361-3p 0 0 1
chr19:5667135|5667450 hsa-miR-188-3p 0 0 1
chr19:5667135|5667450 hsa-miR-1207-5p 1 0 1
chr19:5667135|5667450 hsa-miR-220c 0 0 1
chr19:5667135|5667450 hsa-miR-101 0 0 1
chr19:5667135|5667450 hsa-miR-608 1 0 0
chr19:5667135|5667450 hsa-miR-612 1 0 0
chr19:5667135|5667450 hsa-miR-663a 1 0 0
chr19:5667135|5667450 hsa-miR-762 1 0 0
chr19:5667135|5667450 hsa-miR-1268a 1 0 0
chr19:5667135|5667450 hsa-miR-2861 1 0 0
chr19:5667135|5667450 hsa-miR-3138 1 0 0
chr19:5667135|5667450 hsa-miR-3147 1 0 0
chr19:5667135|5667450 hsa-miR-3154 1 0 0
chr19:5667135|5667450 hsa-miR-3178 1 0 0
chr19:5667135|5667450 hsa-miR-3196 1 0 0
chr19:5667135|5667450 hsa-miR-3197 1 0 0
chr19:5667135|5667450 hsa-miR-4253 1 0 0
chr19:5667135|5667450 hsa-miR-4270 1 0 0
chr19:5667135|5667450 hsa-miR-3937 1 0 0
chr19:5667135|5667450 hsa-miR-3945 1 0 0
chr19:5667135|5667450 hsa-miR-1268b 1 0 0
chr19:5667135|5667450 hsa-miR-4462 1 0 0
chr19:5667135|5667450 hsa-miR-4467 1 0 0
chr19:5667135|5667450 hsa-miR-4469 1 0 0
chr19:5667135|5667450 hsa-miR-4479 1 0 0
chr19:5667135|5667450 hsa-miR-4488 1 0 0
chr19:5667135|5667450 hsa-miR-4505 1 0 0
chr19:5667135|5667450 hsa-miR-2392 1 0 0
chr19:5667135|5667450 hsa-miR-4534 1 0 0
chr19:5667135|5667450 hsa-miR-3960 1 0 0
chr19:5667135|5667450 hsa-miR-4634 1 0 0
chr19:5667135|5667450 hsa-miR-4651 1 0 0
chr19:5667135|5667450 hsa-miR-4688 1 0 0
chr19:5667135|5667450 hsa-miR-4739 1 0 0
chr19:5667135|5667450 hsa-miR-4741 1 0 0
chr19:5667135|5667450 hsa-miR-5090 1 0 0
chr19:5667135|5667450 hsa-miR-5698 1 0 0
chr19:5667135|5667450 hsa-miR-5787 1 0 0
chr19:5667135|5667450 hsa-miR-6076 1 0 0
chr19:5667135|5667450 hsa-miR-6088 1 0 0
chr19:5667135|5667450 hsa-miR-6090 1 0 0
chr19:5667135|5667450 hsa-miR-6132 1 0 0
chr19:5667135|5667450 hsa-miR-6860 1 0 0
chr19:5667135|5667450 hsa-miR-7150 1 0 0
chr19:5667135|5667450 hsa-miR-8072 1 0 0
chr19:5667135|5667450 hsa-miR-8089 1 0 0
chr19:5667135|5667450 hsa-miR-12128 1 0 0
chr19:5667135|5667450 hsa-miR-211-3p 1 0 0
chr19:5667135|5667450 hsa-miR-135a-3p 1 0 0
chr19:5667135|5667450 hsa-miR-6749-3p 1 0 0
chr19:5667135|5667450 hsa-miR-4731-5p 1 0 0
chr19:5667135|5667450 hsa-miR-4433a-3p 1 0 0
chr19:5667135|5667450 hsa-miR-6894-5p 1 0 0
chr19:5667135|5667450 hsa-miR-25-5p 1 0 0
chr19:5667135|5667450 hsa-miR-8071 1 0 0
chr19:5667135|5667450 hsa-miR-6089 1 0 0
chr19:5667135|5667450 hsa-miR-6757-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6890-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6820-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6727-5p 1 0 0
chr19:5667135|5667450 hsa-miR-3622b-5p 1 0 0
chr19:5667135|5667450 hsa-miR-3187-3p 1 0 0
chr19:5667135|5667450 hsa-miR-6721-5p 1 0 0
chr19:5667135|5667450 hsa-miR-197-5p 1 0 0
chr19:5667135|5667450 hsa-miR-7845-5p 1 0 0
chr19:5667135|5667450 hsa-miR-3151-5p 1 0 0
chr19:5667135|5667450 hsa-miR-3180-3p 1 0 0
chr19:5667135|5667450 hsa-miR-6805-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6798-5p 1 0 0
chr19:5667135|5667450 hsa-miR-3126-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6881-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6782-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6810-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6882-3p 1 0 0
chr19:5667135|5667450 hsa-miR-6786-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6835-5p 1 0 0
chr19:5667135|5667450 hsa-miR-1226-5p 1 0 0
chr19:5667135|5667450 hsa-miR-542-5p 1 0 0
chr19:5667135|5667450 hsa-miR-4640-5p 1 0 0
chr19:5667135|5667450 hsa-miR-1908-5p 1 0 0
chr19:5667135|5667450 hsa-miR-296-3p 1 0 0
chr19:5667135|5667450 hsa-miR-4690-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6823-5p 1 0 0
chr19:5667135|5667450 hsa-miR-92b-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6834-5p 1 0 0
chr19:5667135|5667450 hsa-miR-4787-5p 1 0 0
chr19:5667135|5667450 hsa-miR-149-3p 1 0 0
chr19:5667135|5667450 hsa-miR-937-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6886-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6877-5p 1 0 0
chr19:5667135|5667450 hsa-miR-423-5p 1 0 0
chr19:5667135|5667450 hsa-miR-1225-5p 1 0 0
chr19:5667135|5667450 hsa-miR-525-5p 1 0 0
chr19:5667135|5667450 hsa-miR-508-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6777-3p 1 0 0
chr19:5667135|5667450 hsa-miR-5004-5p 1 0 0
chr19:5667135|5667450 hsa-miR-3177-3p 1 0 0
chr19:5667135|5667450 hsa-miR-4433a-5p 1 0 0
chr19:5667135|5667450 hsa-miR-4750-3p 1 0 0
chr19:5667135|5667450 hsa-miR-6798-3p 1 0 0
chr19:5667135|5667450 hsa-miR-4433b-5p 1 0 0
chr19:5667135|5667450 hsa-miR-10400-5p 1 0 0
chr19:5667135|5667450 hsa-miR-1233-5p 1 0 0
chr19:5667135|5667450 hsa-miR-4763-3p 1 0 0
chr19:5667135|5667450 hsa-miR-6787-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6865-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6870-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6775-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6743-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6752-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6754-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6756-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6803-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6842-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6722-3p 1 0 0
chr19:5667135|5667450 hsa-miR-6751-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6797-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6808-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6879-5p 1 0 0
chr19:5667135|5667450 hsa-miR-5189-5p 1 0 0
chr19:5667135|5667450 hsa-miR-5196-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6836-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6862-5p 1 0 0
chr19:5667135|5667450 hsa-miR-10396a-5p 1 0 0
chr19:5667135|5667450 hsa-miR-10396b-5p 1 0 0
chr19:5667135|5667450 hsa-miR-1237-5p 1 0 0
chr19:5667135|5667450 hsa-miR-328-5p 1 0 0
chr19:5667135|5667450 hsa-miR-4632-5p 1 0 0
chr19:5667135|5667450 hsa-miR-4749-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6729-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6794-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6795-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6846-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6848-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6887-5p 1 0 0
chr19:5667135|5667450 hsa-miR-4436b-3p 1 0 0
chr19:5667135|5667450 hsa-miR-4697-5p 1 0 0
chr19:5667135|5667450 hsa-miR-4723-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6885-5p 1 0 0
chr19:5667135|5667450 hsa-miR-10394-3p 1 0 0
chr19:5667135|5667450 hsa-miR-6856-5p 1 0 0
chr19:5667135|5667450 hsa-miR-1914-3p 1 0 0
chr19:5667135|5667450 hsa-miR-4665-5p 1 0 0
chr19:5667135|5667450 hsa-miR-3679-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6766-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6785-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6724-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6762-5p 1 0 0
chr19:5667135|5667450 hsa-miR-520a-5p 1 0 0
chr19:5667135|5667450 hsa-miR-6784-3p 1 0 0
chr19:5667135|5667450 hsa-miR-3622a-3p 1 0 0
chr19:5667135|5667450 hsa-miR-6797-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:5667135|5667450
ORF Type ORF1
Protein Length 41
Nucleotide Length 123
Protein Sequence MCFPPCAHIPATCGPPCGRGGGQVLSGVGHKPGGRRQPPAL
Nucleotide Sequence CTGTGTTTCCCACCCTGTGCCCACATCCCAGCGACTTGCGGGCCCCCTTGTGGGCGGGGGGGGGGTCAGGTACTGTCGGGTGTGGGACACAAACCTGGGGGGAGGAGGCAGCCCCCGGCCCTC
CircID chr19:5667135|5667450
ORF Type ORF2
Protein Length 51
Nucleotide Length 153
Protein Sequence MWRLLESESLCVSHPVPTSQRLAGPLVGGGGVRYCRVWDTNLGGGGSPRPS
Nucleotide Sequence CTGTGGCGGCTTCTGGAGAGTGAATCCCTCTGTGTTTCCCACCCTGTGCCCACATCCCAGCGACTTGCGGGCCCCCTTGTGGGCGGGGGGGGGGTCAGGTACTGTCGGGTGTGGGACACAAACCTGGGGGGAGGAGGCAGCCCCCGGCCCTCG
CircID chr19:5667135|5667450
ORF Type ORF3
Protein Length 98
Nucleotide Length 294
Protein Sequence MSIMPPSAVPCHDRSSSLRPWSPQSRLPLERETSLIWIAPISGSCANNCGGFWRVNPSVFPTLCPHPSDLRAPLWAGGGSGTVGCGTQTWGEEAAPGP
Nucleotide Sequence CTGTCCATCATGCCCCCGTCGGCCGTGCCCTGCCATGACCGGTCATCCTCTCTTCGGCCATGGTCCCCCCAGTCACGTCTGCCCCTTGAAAGAGAGACATCTCTGATTTGGATTGCCCCCATCTCTGGCTCTTGTGCTAATAACTGTGGCGGCTTCTGGAGAGTGAATCCCTCTGTGTTTCCCACCCTGTGCCCACATCCCAGCGACTTGCGGGCCCCCTTGTGGGCGGGGGGGGGGTCAGGTACTGTCGGGTGTGGGACACAAACCTGGGGGGAGGAGGCAGCCCCCGGCCCT
CircID chr19:5667135|5667450
ORF Type ORF4
Protein Length 74
Nucleotide Length 222
Protein Sequence MGCGHRVGNTEGFTLQKPPQLLAQEPEMGAIQIRDVSLSRGRRDWGDHGRREDDRSWQGTADGGMMDRDHKRWQ
Nucleotide Sequence CTGGGATGTGGGCACAGGGTGGGAAACACAGAGGGATTCACTCTCCAGAAGCCGCCACAGTTATTAGCACAAGAGCCAGAGATGGGGGCAATCCAAATCAGAGATGTCTCTCTTTCAAGGGGCAGACGTGACTGGGGGGACCATGGCCGAAGAGAGGATGACCGGTCATGGCAGGGCACGGCCGACGGGGGCATGATGGACAGGGATCACAAGAGGTGGCAA
CircID chr19:5667135|5667450
ORF Type ORF5
Protein Length 48
Nucleotide Length 147
Protein Sequence MPPPPRFVSHTRQYLTPPPPTRGPASRWDVGTGWETQRDSLSRSRHSY
Nucleotide Sequence CTGCCTCCTCCCCCCAGGTTTGTGTCCCACACCCGACAGTACCTGACCCCCCCCCCGCCCACAAGGGGGCCCGCAAGTCGCTGGGATGTGGGCACAGGGTGGGAAACACAGAGGGATTCACTCTCCAGAAGCCGCCACAGTTATTAG
CircID chr19:5667135|5667450
ORF Type ORF6
Protein Length 30
Nucleotide Length 93
Protein Sequence MSLFQGADVTGGTMAEERMTGHGRARPTGA
Nucleotide Sequence ATGTCTCTCTTTCAAGGGGCAGACGTGACTGGGGGGACCATGGCCGAAGAGAGGATGACCGGTCATGGCAGGGCACGGCCGACGGGGGCATGA
CircID chr19:5667135|5667450
ORF Type ORF7
Protein Length 41
Nucleotide Length 126
Protein Sequence MWAQGGKHRGIHSPEAATVISTRARDGGNPNQRCLSFKGQT
Nucleotide Sequence ATGTGGGCACAGGGTGGGAAACACAGAGGGATTCACTCTCCAGAAGCCGCCACAGTTATTAGCACAAGAGCCAGAGATGGGGGCAATCCAAATCAGAGATGTCTCTCTTTCAAGGGGCAGACGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab