CircRNA Information

General Information
circRNA Basic Information
CircID chr19:5667503|5667668
Strand +
CircType exon
Host Gene ENSG00000160633.11;
Algorism CIRI2;
Sequence GTCCAGCTTCCTCCCAGCAGAGAGAACTCGGGAACGCCCACTGTCCAACTCCTGGGCCAGACCACCAGAGAGCAGGCGGTGTCTGGAGTGCTCTTCATTCCTCATTCCAGCACTGAGAGCAGAGCACCTCCTGTGCTCCCCCAAGGAGAGAAGGCGCGGCCTCCAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:5667503|5667668 hsa-miR-148a-5p 0 0 1
chr19:5667503|5667668 hsa-miR-148a-3p 0 0 1
chr19:5667503|5667668 hsa-miR-152-5p 0 0 1
chr19:5667503|5667668 hsa-miR-152-3p 0 0 1
chr19:5667503|5667668 hsa-miR-206 0 0 1
chr19:5667503|5667668 hsa-miR-326 0 0 1
chr19:5667503|5667668 hsa-miR-148b-5p 0 0 1
chr19:5667503|5667668 hsa-miR-148b-3p 0 0 1
chr19:5667503|5667668 hsa-miR-571 0 0 1
chr19:5667503|5667668 hsa-miR-585-5p 0 0 1
chr19:5667503|5667668 hsa-miR-585-3p 0 0 1
chr19:5667503|5667668 hsa-miR-613 0 0 1
chr19:5667503|5667668 hsa-miR-625-5p 0 0 1
chr19:5667503|5667668 hsa-miR-625-3p 0 0 1
chr19:5667503|5667668 hsa-miR-650 1 0 1
chr19:5667503|5667668 hsa-miR-665 0 0 1
chr19:5667503|5667668 hsa-miR-939-5p 0 0 1
chr19:5667503|5667668 hsa-miR-939-3p 0 0 1
chr19:5667503|5667668 hsa-miR-942-5p 0 0 1
chr19:5667503|5667668 hsa-miR-942-3p 0 0 1
chr19:5667503|5667668 hsa-miR-1287-5p 0 0 1
chr19:5667503|5667668 hsa-miR-1287-3p 0 0 1
chr19:5667503|5667668 hsa-miR-1275 0 0 1
chr19:5667503|5667668 hsa-miR-512-3p 0 0 1
chr19:5667503|5667668 hsa-miR-508-5p 0 1 1
chr19:5667503|5667668 hsa-miR-767-3p 0 0 1
chr19:5667503|5667668 hsa-miR-876-3p 0 0 1
chr19:5667503|5667668 hsa-miR-330-5p 0 0 1
chr19:5667503|5667668 hsa-miR-323-5p 0 0 1
chr19:5667503|5667668 hsa-miR-1268 0 0 1
chr19:5667503|5667668 hsa-miR-1 0 0 1
chr19:5667503|5667668 hsa-miR-612 1 0 0
chr19:5667503|5667668 hsa-miR-614 1 0 0
chr19:5667503|5667668 hsa-miR-2117 0 1 0
chr19:5667503|5667668 hsa-miR-3138 1 0 0
chr19:5667503|5667668 hsa-miR-3147 1 0 0
chr19:5667503|5667668 hsa-miR-4298 1 0 0
chr19:5667503|5667668 hsa-miR-3615 1 0 0
chr19:5667503|5667668 hsa-miR-4686 1 0 0
chr19:5667503|5667668 hsa-miR-5698 1 1 0
chr19:5667503|5667668 hsa-miR-8088 1 0 0
chr19:5667503|5667668 hsa-miR-1843 0 1 0
chr19:5667503|5667668 hsa-miR-370-3p 0 1 0
chr19:5667503|5667668 hsa-miR-6840-3p 0 1 0
chr19:5667503|5667668 hsa-miR-3194-3p 0 1 0
chr19:5667503|5667668 hsa-miR-323a-5p 1 1 0
chr19:5667503|5667668 hsa-miR-4433a-3p 0 1 0
chr19:5667503|5667668 hsa-miR-3692-5p 1 1 0
chr19:5667503|5667668 hsa-miR-8071 1 0 0
chr19:5667503|5667668 hsa-miR-5187-5p 0 1 0
chr19:5667503|5667668 hsa-miR-6089 1 0 0
chr19:5667503|5667668 hsa-miR-4722-5p 1 0 0
chr19:5667503|5667668 hsa-miR-6741-5p 1 0 0
chr19:5667503|5667668 hsa-miR-6728-3p 0 1 0
chr19:5667503|5667668 hsa-miR-30b-3p 0 1 0
chr19:5667503|5667668 hsa-miR-5008-5p 1 0 0
chr19:5667503|5667668 hsa-miR-3191-5p 0 1 0
chr19:5667503|5667668 hsa-miR-194-3p 0 1 0
chr19:5667503|5667668 hsa-miR-593-3p 1 0 0
chr19:5667503|5667668 hsa-miR-7152-3p 1 0 0
chr19:5667503|5667668 hsa-miR-6828-3p 0 1 0
chr19:5667503|5667668 hsa-miR-6880-3p 0 1 0
chr19:5667503|5667668 hsa-miR-1273h-5p 0 1 0
chr19:5667503|5667668 hsa-miR-6870-5p 0 1 0
chr19:5667503|5667668 hsa-miR-6779-5p 0 1 0
chr19:5667503|5667668 hsa-miR-6780a-5p 0 1 0
chr19:5667503|5667668 hsa-miR-7111-5p 0 1 0
chr19:5667503|5667668 hsa-miR-320a-5p 0 1 0
chr19:5667503|5667668 hsa-miR-3620-5p 1 0 0
chr19:5667503|5667668 hsa-miR-1237-5p 1 0 0
chr19:5667503|5667668 hsa-miR-328-5p 1 1 0
chr19:5667503|5667668 hsa-miR-4723-5p 0 1 0
chr19:5667503|5667668 hsa-miR-6773-5p 1 0 0
chr19:5667503|5667668 hsa-miR-4665-5p 1 1 0
chr19:5667503|5667668 hsa-miR-3689d 0 1 0
chr19:5667503|5667668 hsa-miR-6805-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:5667503|5667668
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence MGQTTREQAVSGVLFIPHSSTESRAPPVLPQGEKARPP
Nucleotide Sequence CTGGGCCAGACCACCAGAGAGCAGGCGGTGTCTGGAGTGCTCTTCATTCCTCATTCCAGCACTGAGAGCAGAGCACCTCCTGTGCTCCCCCAAGGAGAGAAGGCGCGGCCTCCA
CircID chr19:5667503|5667668
ORF Type ORF2
Protein Length 42
Nucleotide Length 126
Protein Sequence MSNSWARPPESRRCLECSSFLIPALRAEHLLCSPKERRRGLH
Nucleotide Sequence CTGTCCAACTCCTGGGCCAGACCACCAGAGAGCAGGCGGTGTCTGGAGTGCTCTTCATTCCTCATTCCAGCACTGAGAGCAGAGCACCTCCTGTGCTCCCCCAAGGAGAGAAGGCGCGGCCTCCAT
CircID chr19:5667503|5667668
ORF Type ORF3
Protein Length 48
Nucleotide Length 144
Protein Sequence MGEHRRCSALSAGMRNEEHSRHRLLSGGLAQELDSGRSRVLSAGRKLD
Nucleotide Sequence TTGGGGGAGCACAGGAGGTGCTCTGCTCTCAGTGCTGGAATGAGGAATGAAGAGCACTCCAGACACCGCCTGCTCTCTGGTGGTCTGGCCCAGGAGTTGGACAGTGGGCGTTCCCGAGTTCTCTCTGCTGGGAGGAAGCTGGAC
CircID chr19:5667503|5667668
ORF Type ORF4
Protein Length 32
Nucleotide Length 96
Protein Sequence MKSTPDTACSLVVWPRSWTVGVPEFSLLGGSW
Nucleotide Sequence ATGAAGAGCACTCCAGACACCGCCTGCTCTCTGGTGGTCTGGCCCAGGAGTTGGACAGTGGGCGTTCCCGAGTTCTCTCTGCTGGGAGGAAGCTGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab