CircRNA Information

General Information
circRNA Basic Information
CircID chr19:5691532|5691774
Strand +
CircType exon
Host Gene ENSG00000130255.11;
Algorism CIRI2;
Sequence GACCAGGCAGCACCCGGAGAGGGTGTGGCTCAGAGCGGGCACCAGACAGGGGACTGCGGGCCCCCGACACACCCACACCCACCCACGGACAGCAGGAGAGCCAGGGCTTCTGTCAAGCTGTTCTTTATTTCAGGGAGAGGGCAGGGGAGGGGCTCAGTCTTTCTTGGCAGCAGCTTTCCTCATGGCGGCCAGTACGTTGCTCAGCTCCTCCCGCTTCCTCTTGGCGCGGATGTGCGTCCCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:5691532|5691774 hsa-miR-149-5p 0 0 1
chr19:5691532|5691774 hsa-miR-149-3p 0 0 1
chr19:5691532|5691774 hsa-miR-186-5p 0 0 1
chr19:5691532|5691774 hsa-miR-186-3p 0 0 1
chr19:5691532|5691774 hsa-miR-320a-5p 0 0 1
chr19:5691532|5691774 hsa-miR-320a-3p 0 0 1
chr19:5691532|5691774 hsa-miR-370-5p 0 0 1
chr19:5691532|5691774 hsa-miR-370-3p 0 0 1
chr19:5691532|5691774 hsa-miR-193b-5p 0 0 1
chr19:5691532|5691774 hsa-miR-193b-3p 0 0 1
chr19:5691532|5691774 hsa-miR-609 0 0 1
chr19:5691532|5691774 hsa-miR-626 0 0 1
chr19:5691532|5691774 hsa-miR-661 0 0 1
chr19:5691532|5691774 hsa-miR-765 0 0 1
chr19:5691532|5691774 hsa-miR-892b 0 0 1
chr19:5691532|5691774 hsa-miR-708-5p 0 0 1
chr19:5691532|5691774 hsa-miR-708-3p 0 0 1
chr19:5691532|5691774 hsa-miR-760 1 0 1
chr19:5691532|5691774 hsa-miR-937-5p 0 0 1
chr19:5691532|5691774 hsa-miR-937-3p 0 0 1
chr19:5691532|5691774 hsa-miR-1231 0 0 1
chr19:5691532|5691774 hsa-miR-1293 0 0 1
chr19:5691532|5691774 hsa-miR-1225-3p 0 1 1
chr19:5691532|5691774 hsa-miR-491-5p 0 1 1
chr19:5691532|5691774 hsa-miR-339-5p 0 1 1
chr19:5691532|5691774 hsa-miR-28-5p 0 1 1
chr19:5691532|5691774 hsa-miR-331-3p 0 0 1
chr19:5691532|5691774 hsa-miR-320b 0 1 1
chr19:5691532|5691774 hsa-miR-320c 0 1 1
chr19:5691532|5691774 hsa-miR-125a-5p 0 0 1
chr19:5691532|5691774 hsa-miR-320d 0 0 1
chr19:5691532|5691774 hsa-miR-193a-3p 0 0 1
chr19:5691532|5691774 hsa-miR-1233 0 0 1
chr19:5691532|5691774 hsa-miR-125b 0 0 1
chr19:5691532|5691774 hsa-miR-1254 0 0 1
chr19:5691532|5691774 hsa-miR-326 0 1 0
chr19:5691532|5691774 hsa-miR-1538 1 0 0
chr19:5691532|5691774 hsa-miR-1976 0 1 0
chr19:5691532|5691774 hsa-miR-2110 0 1 0
chr19:5691532|5691774 hsa-miR-3125 0 1 0
chr19:5691532|5691774 hsa-miR-3921 0 1 0
chr19:5691532|5691774 hsa-miR-4429 0 1 0
chr19:5691532|5691774 hsa-miR-4455 0 1 0
chr19:5691532|5691774 hsa-miR-4488 1 0 0
chr19:5691532|5691774 hsa-miR-5193 0 1 0
chr19:5691532|5691774 hsa-miR-6749-3p 0 1 0
chr19:5691532|5691774 hsa-miR-4665-3p 1 0 0
chr19:5691532|5691774 hsa-miR-671-5p 0 1 0
chr19:5691532|5691774 hsa-miR-7106-5p 0 1 0
chr19:5691532|5691774 hsa-miR-6892-3p 0 1 0
chr19:5691532|5691774 hsa-miR-6759-5p 0 1 0
chr19:5691532|5691774 hsa-miR-6845-3p 0 1 0
chr19:5691532|5691774 hsa-miR-6748-5p 0 1 0
chr19:5691532|5691774 hsa-miR-6810-5p 0 1 0
chr19:5691532|5691774 hsa-miR-345-3p 0 1 0
chr19:5691532|5691774 hsa-miR-1908-3p 1 0 0
chr19:5691532|5691774 hsa-miR-7113-3p 1 0 0
chr19:5691532|5691774 hsa-miR-6769a-3p 0 1 0
chr19:5691532|5691774 hsa-miR-3191-3p 1 1 0
chr19:5691532|5691774 hsa-miR-3120-5p 0 1 0
chr19:5691532|5691774 hsa-miR-6887-3p 0 1 0
chr19:5691532|5691774 hsa-miR-6752-3p 0 1 0
chr19:5691532|5691774 hsa-miR-4749-3p 0 1 0
chr19:5691532|5691774 hsa-miR-6857-3p 0 1 0
chr19:5691532|5691774 hsa-miR-449b-3p 0 1 0
chr19:5691532|5691774 hsa-miR-6779-3p 0 1 0
chr19:5691532|5691774 hsa-miR-6838-3p 0 1 0
chr19:5691532|5691774 hsa-miR-6769b-5p 0 1 0
chr19:5691532|5691774 hsa-miR-6756-5p 1 1 0
chr19:5691532|5691774 hsa-miR-6769a-5p 0 1 0
chr19:5691532|5691774 hsa-miR-6779-5p 0 1 0
chr19:5691532|5691774 hsa-miR-4685-3p 1 0 0
chr19:5691532|5691774 hsa-miR-328-5p 1 0 0
chr19:5691532|5691774 hsa-miR-6858-5p 1 1 0
chr19:5691532|5691774 hsa-miR-3187-5p 0 1 0
chr19:5691532|5691774 hsa-miR-6885-5p 1 0 0
chr19:5691532|5691774 hsa-miR-1199-5p 0 1 0
chr19:5691532|5691774 hsa-miR-1271-3p 0 1 0
chr19:5691532|5691774 hsa-miR-6877-3p 0 1 0
chr19:5691532|5691774 hsa-miR-6801-3p 0 1 0
chr19:5691532|5691774 hsa-miR-6810-3p 0 1 0
chr19:5691532|5691774 hsa-miR-4723-3p 0 1 0
chr19:5691532|5691774 hsa-miR-6751-3p 0 1 0
chr19:5691532|5691774 hsa-miR-6823-3p 0 1 0
chr19:5691532|5691774 hsa-miR-3085-3p 1 0 0
chr19:5691532|5691774 hsa-miR-6859-5p 0 1 0
chr19:5691532|5691774 hsa-miR-6806-3p 0 1 0
chr19:5691532|5691774 hsa-miR-4653-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:5691532|5691774
ORF Type ORF1
Protein Length 42
Nucleotide Length 126
Protein Sequence MFFISGRGQGRGSVFLGSSFPHGGQYVAQLLPLPLGADVRPH
Nucleotide Sequence CTGTTCTTTATTTCAGGGAGAGGGCAGGGGAGGGGCTCAGTCTTTCTTGGCAGCAGCTTTCCTCATGGCGGCCAGTACGTTGCTCAGCTCCTCCCGCTTCCTCTTGGCGCGGATGTGCGTCCCCAC
CircID chr19:5691532|5691774
ORF Type ORF2
Protein Length 44
Nucleotide Length 132
Protein Sequence MSSCSLFQGEGRGGAQSFLAAAFLMAASTLLSSSRFLLARMCVP
Nucleotide Sequence CTGTCAAGCTGTTCTTTATTTCAGGGAGAGGGCAGGGGAGGGGCTCAGTCTTTCTTGGCAGCAGCTTTCCTCATGGCGGCCAGTACGTTGCTCAGCTCCTCCCGCTTCCTCTTGGCGCGGATGTGCGTCCCC
CircID chr19:5691532|5691774
ORF Type ORF3
Protein Length 63
Nucleotide Length 189
Protein Sequence MRAPDTPTPTHGQQESQGFCQAVLYFRERAGEGLSLSWQQLSSWRPVRCSAPPASSWRGCASP
Nucleotide Sequence CTGCGGGCCCCCGACACACCCACACCCACCCACGGACAGCAGGAGAGCCAGGGCTTCTGTCAAGCTGTTCTTTATTTCAGGGAGAGGGCAGGGGAGGGGCTCAGTCTTTCTTGGCAGCAGCTTTCCTCATGGCGGCCAGTACGTTGCTCAGCTCCTCCCGCTTCCTCTTGGCGCGGATGTGCGTCCCCA
CircID chr19:5691532|5691774
ORF Type ORF4
Protein Length 47
Nucleotide Length 144
Protein Sequence MLPRKTEPLPCPLPEIKNSLTEALALLLSVGGCGCVGGPQSPVWCPL
Nucleotide Sequence CTGCTGCCAAGAAAGACTGAGCCCCTCCCCTGCCCTCTCCCTGAAATAAAGAACAGCTTGACAGAAGCCCTGGCTCTCCTGCTGTCCGTGGGTGGGTGTGGGTGTGTCGGGGGCCCGCAGTCCCCTGTCTGGTGCCCGCTCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab