CircRNA Information

General Information
circRNA Basic Information
CircID chr19:57605828|57606004
Strand +
CircType exon
Host Gene ENSG00000183647.9;
Algorism CIRI2;
Sequence CTGCAGTTCATCATAAATGAGGCCTGGTCCCCATCCACTTTAAAGAGCTTCTCTCCATTATCAAGCTTCTGGAGCTGGTGAAGGTTTGAACTCATCCAGAAATCTCTTGATGCTCCACCCAAGTACAATTTCTGTCCACAGGGTGAGGCATGGAGCTCAATCATTTGTAAAATGTCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:57605828|57606004 hsa-miR-17-5p 0 0 1
chr19:57605828|57606004 hsa-miR-17-3p 0 0 1
chr19:57605828|57606004 hsa-miR-20a-5p 0 0 1
chr19:57605828|57606004 hsa-miR-20a-3p 0 0 1
chr19:57605828|57606004 hsa-miR-93-5p 0 0 1
chr19:57605828|57606004 hsa-miR-93-3p 0 0 1
chr19:57605828|57606004 hsa-miR-106a-5p 0 0 1
chr19:57605828|57606004 hsa-miR-106a-3p 0 0 1
chr19:57605828|57606004 hsa-miR-197-5p 0 0 1
chr19:57605828|57606004 hsa-miR-197-3p 0 0 1
chr19:57605828|57606004 hsa-miR-10a-5p 0 0 1
chr19:57605828|57606004 hsa-miR-10a-3p 0 0 1
chr19:57605828|57606004 hsa-miR-10b-5p 0 0 1
chr19:57605828|57606004 hsa-miR-10b-3p 0 0 1
chr19:57605828|57606004 hsa-miR-185-5p 0 0 1
chr19:57605828|57606004 hsa-miR-185-3p 0 0 1
chr19:57605828|57606004 hsa-miR-106b-5p 0 0 1
chr19:57605828|57606004 hsa-miR-106b-3p 0 0 1
chr19:57605828|57606004 hsa-miR-335-5p 0 0 1
chr19:57605828|57606004 hsa-miR-335-3p 0 0 1
chr19:57605828|57606004 hsa-miR-20b-5p 0 0 1
chr19:57605828|57606004 hsa-miR-20b-3p 0 0 1
chr19:57605828|57606004 hsa-miR-412-5p 0 0 1
chr19:57605828|57606004 hsa-miR-412-3p 0 0 1
chr19:57605828|57606004 hsa-miR-519d-5p 0 0 1
chr19:57605828|57606004 hsa-miR-519d-3p 0 0 1
chr19:57605828|57606004 hsa-miR-890 0 0 1
chr19:57605828|57606004 hsa-miR-1226-5p 0 0 1
chr19:57605828|57606004 hsa-miR-1226-3p 0 0 1
chr19:57605828|57606004 hsa-miR-1293 0 0 1
chr19:57605828|57606004 hsa-miR-1299 0 0 1
chr19:57605828|57606004 hsa-miR-1255a 0 0 1
chr19:57605828|57606004 hsa-miR-1262 0 0 1
chr19:57605828|57606004 hsa-miR-1272 0 0 1
chr19:57605828|57606004 hsa-miR-1322 0 0 1
chr19:57605828|57606004 hsa-miR-524-5p 0 0 1
chr19:57605828|57606004 hsa-miR-509-3-5p 0 0 1
chr19:57605828|57606004 hsa-miR-509-5p 0 0 1
chr19:57605828|57606004 hsa-miR-520d-5p 0 0 1
chr19:57605828|57606004 hsa-miR-1255b 0 0 1
chr19:57605828|57606004 hsa-miR-516b 0 0 1
chr19:57605828|57606004 hsa-miR-637 1 0 0
chr19:57605828|57606004 hsa-miR-2110 1 0 0
chr19:57605828|57606004 hsa-miR-3138 0 1 0
chr19:57605828|57606004 hsa-miR-1193 1 0 0
chr19:57605828|57606004 hsa-miR-2392 1 0 0
chr19:57605828|57606004 hsa-miR-4507 1 0 0
chr19:57605828|57606004 hsa-miR-4651 1 0 0
chr19:57605828|57606004 hsa-miR-4689 1 0 0
chr19:57605828|57606004 hsa-miR-5192 1 0 0
chr19:57605828|57606004 hsa-miR-5739 1 0 0
chr19:57605828|57606004 hsa-miR-8085 1 0 0
chr19:57605828|57606004 hsa-miR-8089 1 0 0
chr19:57605828|57606004 hsa-miR-12115 1 0 0
chr19:57605828|57606004 hsa-miR-12118 1 0 0
chr19:57605828|57606004 hsa-miR-92a-2-5p 1 0 0
chr19:57605828|57606004 hsa-miR-671-5p 1 0 0
chr19:57605828|57606004 hsa-miR-6894-5p 1 0 0
chr19:57605828|57606004 hsa-miR-6857-5p 1 0 0
chr19:57605828|57606004 hsa-miR-1227-5p 1 0 0
chr19:57605828|57606004 hsa-miR-6880-5p 0 1 0
chr19:57605828|57606004 hsa-miR-6746-5p 1 0 0
chr19:57605828|57606004 hsa-miR-6759-5p 1 0 0
chr19:57605828|57606004 hsa-miR-6748-5p 1 0 0
chr19:57605828|57606004 hsa-miR-6732-5p 1 0 0
chr19:57605828|57606004 hsa-miR-2467-3p 1 0 0
chr19:57605828|57606004 hsa-miR-6810-5p 1 1 0
chr19:57605828|57606004 hsa-miR-6786-5p 1 0 0
chr19:57605828|57606004 hsa-miR-3691-5p 1 1 0
chr19:57605828|57606004 hsa-miR-1228-5p 1 0 0
chr19:57605828|57606004 hsa-miR-149-3p 1 0 0
chr19:57605828|57606004 hsa-miR-146b-3p 0 1 0
chr19:57605828|57606004 hsa-miR-6872-3p 0 1 0
chr19:57605828|57606004 hsa-miR-2681-5p 0 1 0
chr19:57605828|57606004 hsa-miR-539-5p 0 1 0
chr19:57605828|57606004 hsa-miR-5581-3p 0 1 0
chr19:57605828|57606004 hsa-miR-4650-5p 0 1 0
chr19:57605828|57606004 hsa-miR-6812-5p 1 0 0
chr19:57605828|57606004 hsa-miR-6756-5p 1 0 0
chr19:57605828|57606004 hsa-miR-1249-5p 1 0 0
chr19:57605828|57606004 hsa-miR-6763-5p 1 0 0
chr19:57605828|57606004 hsa-miR-6779-5p 1 0 0
chr19:57605828|57606004 hsa-miR-6797-5p 1 0 0
chr19:57605828|57606004 hsa-miR-6754-3p 0 1 0
chr19:57605828|57606004 hsa-miR-4728-5p 1 0 0
chr19:57605828|57606004 hsa-miR-328-5p 1 0 0
chr19:57605828|57606004 hsa-miR-4749-5p 1 0 0
chr19:57605828|57606004 hsa-miR-6794-5p 1 0 0
chr19:57605828|57606004 hsa-miR-6795-5p 1 0 0
chr19:57605828|57606004 hsa-miR-3940-5p 1 0 0
chr19:57605828|57606004 hsa-miR-6856-5p 1 0 0
chr19:57605828|57606004 hsa-miR-6766-5p 1 1 0
chr19:57605828|57606004 hsa-miR-6849-5p 1 1 0
chr19:57605828|57606004 hsa-miR-6744-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:57605828|57606004
ORF Type ORF1
Protein Length 26
Nucleotide Length 81
Protein Sequence LQFIINEAWSPSTLKSFSPLSSFWSW
Nucleotide Sequence CTGCAGTTCATCATAAATGAGGCCTGGTCCCCATCCACTTTAAAGAGCTTCTCTCCATTATCAAGCTTCTGGAGCTGGTGA
CircID chr19:57605828|57606004
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MNSSRNLLMLHPSTISVHRVRHGAQSFVKC
Nucleotide Sequence TTGAACTCATCCAGAAATCTCTTGATGCTCCACCCAAGTACAATTTCTGTCCACAGGGTGAGGCATGGAGCTCAATCATTTGTAAAATGT
CircID chr19:57605828|57606004
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MWTEIVLGWSIKRFLDEFKPSPAPEA
Nucleotide Sequence CTGTGGACAGAAATTGTACTTGGGTGGAGCATCAAGAGATTTCTGGATGAGTTCAAACCTTCACCAGCTCCAGAAGCTTGA
CircID chr19:57605828|57606004
ORF Type ORF4
Protein Length 54
Nucleotide Length 162
Protein Sequence MIELHASPCGQKLYLGGASRDFWMSSNLHQLQKLDNGEKLFKVDGDQASFMMNC
Nucleotide Sequence ATGATTGAGCTCCATGCCTCACCCTGTGGACAGAAATTGTACTTGGGTGGAGCATCAAGAGATTTCTGGATGAGTTCAAACCTTCACCAGCTCCAGAAGCTTGATAATGGAGAGAAGCTCTTTAAAGTGGATGGGGACCAGGCCTCATTTATGATGAACTGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab