CircRNA Information

General Information
circRNA Basic Information
CircID chr19:580395|580735
Strand -
CircType exon
Host Gene ENSG00000172270.17;
Algorism CIRI2;
Sequence CAGTGGGGAGAGTACTCCTGCGTCTTCCTCCCCGAGCCCATGGGCACGGCCAACATCCAGCTCCACGGTGAGTCCTGCAGCCAGGGGTACCGGGCACCACCGACTGTCGGGAGAAGTTGTTGGCCTGAGGCACCCGGCACATCCCAGAGCCCTGGCCCCCTGCTCCCTGGAGGGGAACAGCCCTCCTGCGGGAGGCCGGGGATGGGGGCGGGCCTGCGGTTCCAGGCTCCTCTCTCTCACCCTCCTGTCAGGGCCTCCCAGAGTGAAGGCTGTGAAGTCGTCAGAACACATCAACGAGGGGGAGACGGCCATGCTGGTCTGCAAGTCAGAGTCCGTGCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:580395|580735 hsa-miR-27a-5p 0 0 1
chr19:580395|580735 hsa-miR-27a-3p 0 0 1
chr19:580395|580735 hsa-miR-27b-5p 0 0 1
chr19:580395|580735 hsa-miR-27b-3p 0 0 1
chr19:580395|580735 hsa-miR-326 0 0 1
chr19:580395|580735 hsa-miR-345-5p 0 0 1
chr19:580395|580735 hsa-miR-345-3p 0 0 1
chr19:580395|580735 hsa-miR-564 1 0 1
chr19:580395|580735 hsa-miR-604 0 0 1
chr19:580395|580735 hsa-miR-634 0 0 1
chr19:580395|580735 hsa-miR-647 0 1 1
chr19:580395|580735 hsa-miR-760 0 1 1
chr19:580395|580735 hsa-miR-1205 0 1 1
chr19:580395|580735 hsa-miR-1286 0 0 1
chr19:580395|580735 hsa-miR-1287-5p 0 0 1
chr19:580395|580735 hsa-miR-1287-3p 0 0 1
chr19:580395|580735 hsa-miR-1291 1 1 1
chr19:580395|580735 hsa-miR-542-5p 0 0 1
chr19:580395|580735 hsa-miR-331-3p 0 0 1
chr19:580395|580735 hsa-miR-513a-5p 0 0 1
chr19:580395|580735 hsa-miR-455-5p 0 0 1
chr19:580395|580735 hsa-miR-338-3p 0 0 1
chr19:580395|580735 hsa-miR-330-5p 0 1 1
chr19:580395|580735 hsa-miR-7 0 0 1
chr19:580395|580735 hsa-miR-1254 0 0 1
chr19:580395|580735 hsa-miR-484 0 1 0
chr19:580395|580735 hsa-miR-602 1 0 0
chr19:580395|580735 hsa-miR-661 0 1 0
chr19:580395|580735 hsa-miR-762 1 0 0
chr19:580395|580735 hsa-miR-3175 1 0 0
chr19:580395|580735 hsa-miR-4314 0 1 0
chr19:580395|580735 hsa-miR-4270 0 1 0
chr19:580395|580735 hsa-miR-3660 0 1 0
chr19:580395|580735 hsa-miR-4418 0 1 0
chr19:580395|580735 hsa-miR-3689c 0 1 0
chr19:580395|580735 hsa-miR-4487 0 1 0
chr19:580395|580735 hsa-miR-4510 0 1 0
chr19:580395|580735 hsa-miR-4522 1 1 0
chr19:580395|580735 hsa-miR-4526 0 1 0
chr19:580395|580735 hsa-miR-4674 1 1 0
chr19:580395|580735 hsa-miR-4675 1 1 0
chr19:580395|580735 hsa-miR-4706 1 0 0
chr19:580395|580735 hsa-miR-4739 1 1 0
chr19:580395|580735 hsa-miR-4779 0 1 0
chr19:580395|580735 hsa-miR-6081 0 1 0
chr19:580395|580735 hsa-miR-6084 1 0 0
chr19:580395|580735 hsa-miR-6090 1 0 0
chr19:580395|580735 hsa-miR-6133 0 1 0
chr19:580395|580735 hsa-miR-7703 1 0 0
chr19:580395|580735 hsa-miR-8073 0 1 0
chr19:580395|580735 hsa-miR-12115 1 0 0
chr19:580395|580735 hsa-miR-4747-3p 0 1 0
chr19:580395|580735 hsa-miR-4687-3p 0 1 0
chr19:580395|580735 hsa-miR-6799-5p 1 0 0
chr19:580395|580735 hsa-miR-6510-5p 0 1 0
chr19:580395|580735 hsa-miR-6728-5p 1 0 0
chr19:580395|580735 hsa-miR-766-5p 0 1 0
chr19:580395|580735 hsa-miR-6804-5p 0 1 0
chr19:580395|580735 hsa-miR-3192-5p 0 1 0
chr19:580395|580735 hsa-miR-7847-3p 1 0 0
chr19:580395|580735 hsa-miR-4722-5p 1 1 0
chr19:580395|580735 hsa-miR-5589-5p 0 1 0
chr19:580395|580735 hsa-miR-3180-3p 1 0 0
chr19:580395|580735 hsa-miR-6805-5p 0 1 0
chr19:580395|580735 hsa-miR-6798-5p 0 1 0
chr19:580395|580735 hsa-miR-6760-5p 0 1 0
chr19:580395|580735 hsa-miR-6874-5p 0 1 0
chr19:580395|580735 hsa-miR-5008-5p 0 1 0
chr19:580395|580735 hsa-miR-5088-5p 1 1 0
chr19:580395|580735 hsa-miR-7109-5p 1 0 0
chr19:580395|580735 hsa-miR-6763-3p 0 1 0
chr19:580395|580735 hsa-miR-7108-3p 0 1 0
chr19:580395|580735 hsa-miR-4707-3p 0 1 0
chr19:580395|580735 hsa-miR-1229-5p 1 0 0
chr19:580395|580735 hsa-miR-6784-5p 0 1 0
chr19:580395|580735 hsa-miR-4640-5p 0 1 0
chr19:580395|580735 hsa-miR-3127-5p 0 1 0
chr19:580395|580735 hsa-miR-1908-5p 1 0 0
chr19:580395|580735 hsa-miR-6749-5p 1 0 0
chr19:580395|580735 hsa-miR-149-3p 1 0 0
chr19:580395|580735 hsa-miR-6824-5p 1 0 0
chr19:580395|580735 hsa-miR-3162-5p 0 1 0
chr19:580395|580735 hsa-miR-6886-5p 0 1 0
chr19:580395|580735 hsa-miR-4707-5p 0 1 0
chr19:580395|580735 hsa-miR-7112-3p 1 0 0
chr19:580395|580735 hsa-miR-3614-3p 0 1 0
chr19:580395|580735 hsa-miR-7113-5p 0 1 0
chr19:580395|580735 hsa-miR-6795-3p 0 1 0
chr19:580395|580735 hsa-miR-541-5p 1 0 0
chr19:580395|580735 hsa-miR-6729-3p 0 1 0
chr19:580395|580735 hsa-miR-514a-5p 0 1 0
chr19:580395|580735 hsa-miR-1273h-5p 0 1 0
chr19:580395|580735 hsa-miR-3689b-3p 0 1 0
chr19:580395|580735 hsa-miR-6778-5p 0 1 0
chr19:580395|580735 hsa-miR-6812-5p 1 0 0
chr19:580395|580735 hsa-miR-1343-5p 1 0 0
chr19:580395|580735 hsa-miR-6752-5p 1 0 0
chr19:580395|580735 hsa-miR-6819-5p 1 0 0
chr19:580395|580735 hsa-miR-11181-3p 1 0 0
chr19:580395|580735 hsa-miR-6722-3p 1 0 0
chr19:580395|580735 hsa-miR-6779-5p 0 1 0
chr19:580395|580735 hsa-miR-6780a-5p 0 1 0
chr19:580395|580735 hsa-miR-7111-5p 1 0 0
chr19:580395|580735 hsa-miR-4728-5p 1 1 0
chr19:580395|580735 hsa-miR-6780b-5p 1 0 0
chr19:580395|580735 hsa-miR-1909-3p 0 1 0
chr19:580395|580735 hsa-miR-328-5p 1 0 0
chr19:580395|580735 hsa-miR-3689a-3p 0 1 0
chr19:580395|580735 hsa-miR-4685-5p 1 1 0
chr19:580395|580735 hsa-miR-4726-5p 0 1 0
chr19:580395|580735 hsa-miR-4749-5p 1 0 0
chr19:580395|580735 hsa-miR-6777-5p 1 1 0
chr19:580395|580735 hsa-miR-6887-5p 1 0 0
chr19:580395|580735 hsa-miR-6889-5p 0 1 0
chr19:580395|580735 hsa-miR-6845-5p 0 1 0
chr19:580395|580735 hsa-miR-939-5p 1 0 0
chr19:580395|580735 hsa-miR-3085-5p 1 0 0
chr19:580395|580735 hsa-miR-6856-5p 1 1 0
chr19:580395|580735 hsa-miR-3116 0 1 0
chr19:580395|580735 hsa-miR-3184-5p 1 1 0
chr19:580395|580735 hsa-miR-10400-3p 0 1 0
chr19:580395|580735 hsa-miR-3085-3p 0 1 0
chr19:580395|580735 hsa-miR-10394-5p 0 1 0
chr19:580395|580735 hsa-miR-6827-3p 0 1 0
chr19:580395|580735 hsa-miR-6506-5p 0 1 0
chr19:580395|580735 hsa-miR-301a-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:580395|580735
ORF Type ORF1
Protein Length 100
Nucleotide Length 300
Protein Sequence MGTANIQLHGESCSQGYRAPPTVGRSCWPEAPGTSQSPGPLLPGGEQPSCGRPGMGAGLRFQAPLSHPPVRASQSEGCEVVRTHQRGGDGHAGLQVRVRA
Nucleotide Sequence ATGGGCACGGCCAACATCCAGCTCCACGGTGAGTCCTGCAGCCAGGGGTACCGGGCACCACCGACTGTCGGGAGAAGTTGTTGGCCTGAGGCACCCGGCACATCCCAGAGCCCTGGCCCCCTGCTCCCTGGAGGGGAACAGCCCTCCTGCGGGAGGCCGGGGATGGGGGCGGGCCTGCGGTTCCAGGCTCCTCTCTCTCACCCTCCTGTCAGGGCCTCCCAGAGTGAAGGCTGTGAAGTCGTCAGAACACATCAACGAGGGGGAGACGGCCATGCTGGTCTGCAAGTCAGAGTCCGTGCC
CircID chr19:580395|580735
ORF Type ORF2
Protein Length 79
Nucleotide Length 237
Protein Sequence MSGEVVGLRHPAHPRALAPCSLEGNSPPAGGRGWGRACGSRLLSLTLLSGPPRVKAVKSSEHINEGETAMLVCKSESVP
Nucleotide Sequence CTGTCGGGAGAAGTTGTTGGCCTGAGGCACCCGGCACATCCCAGAGCCCTGGCCCCCTGCTCCCTGGAGGGGAACAGCCCTCCTGCGGGAGGCCGGGGATGGGGGCGGGCCTGCGGTTCCAGGCTCCTCTCTCTCACCCTCCTGTCAGGGCCTCCCAGAGTGAAGGCTGTGAAGTCGTCAGAACACATCAACGAGGGGGAGACGGCCATGCTGGTCTGCAAGTCAGAGTCCGTGCCA
CircID chr19:580395|580735
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MREAGDGGGPAVPGSSLSPSCQGLPE
Nucleotide Sequence CTGCGGGAGGCCGGGGATGGGGGCGGGCCTGCGGTTCCAGGCTCCTCTCTCTCACCCTCCTGTCAGGGCCTCCCAGAGTGA
CircID chr19:580395|580735
ORF Type ORF4
Protein Length 26
Nucleotide Length 78
Protein Sequence MQDSPWSWMLAVPMGSGRKTQEYSPH
Nucleotide Sequence CTGCAGGACTCACCGTGGAGCTGGATGTTGGCCGTGCCCATGGGCTCGGGGAGGAAGACGCAGGAGTACTCTCCCCAC
CircID chr19:580395|580735
ORF Type ORF5
Protein Length 47
Nucleotide Length 141
Protein Sequence MCRVPQANNFSRQSVVPGTPGCRTHRGAGCWPCPWARGGRRRSTLPT
Nucleotide Sequence ATGTGCCGGGTGCCTCAGGCCAACAACTTCTCCCGACAGTCGGTGGTGCCCGGTACCCCTGGCTGCAGGACTCACCGTGGAGCTGGATGTTGGCCGTGCCCATGGGCTCGGGGAGGAAGACGCAGGAGTACTCTCCCCACT
CircID chr19:580395|580735
ORF Type ORF6
Protein Length 108
Nucleotide Length 324
Protein Sequence MQTSMAVSPSLMCSDDFTAFTLGGPDRRVRERSLEPQARPHPRPPAGGLFPSREQGARALGCAGCLRPTTSPDSRWCPVPLAAGLTVELDVGRAHGLGEEDAGVLSPL
Nucleotide Sequence TTGCAGACCAGCATGGCCGTCTCCCCCTCGTTGATGTGTTCTGACGACTTCACAGCCTTCACTCTGGGAGGCCCTGACAGGAGGGTGAGAGAGAGGAGCCTGGAACCGCAGGCCCGCCCCCATCCCCGGCCTCCCGCAGGAGGGCTGTTCCCCTCCAGGGAGCAGGGGGCCAGGGCTCTGGGATGTGCCGGGTGCCTCAGGCCAACAACTTCTCCCGACAGTCGGTGGTGCCCGGTACCCCTGGCTGCAGGACTCACCGTGGAGCTGGATGTTGGCCGTGCCCATGGGCTCGGGGAGGAAGACGCAGGAGTACTCTCCCCACTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab