CircRNA Information

General Information
circRNA Basic Information
CircID chr19:580395|580771
Strand -
CircType exon
Host Gene ENSG00000172270.17;
Algorism CIRI2;
Sequence CAGTGGGGAGAGTACTCCTGCGTCTTCCTCCCCGAGCCCATGGGCACGGCCAACATCCAGCTCCACGGTGAGTCCTGCAGCCAGGGGTACCGGGCACCACCGACTGTCGGGAGAAGTTGTTGGCCTGAGGCACCCGGCACATCCCAGAGCCCTGGCCCCCTGCTCCCTGGAGGGGAACAGCCCTCCTGCGGGAGGCCGGGGATGGGGGCGGGCCTGCGGTTCCAGGCTCCTCTCTCTCACCCTCCTGTCAGGGCCTCCCAGAGTGAAGGCTGTGAAGTCGTCAGAACACATCAACGAGGGGGAGACGGCCATGCTGGTCTGCAAGTCAGAGTCCGTGCCACCTGTCACTGACTGGGCCTGGTACAAGATCACTGACT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:580395|580771 hsa-miR-27a-5p 0 0 1
chr19:580395|580771 hsa-miR-27a-3p 0 0 1
chr19:580395|580771 hsa-miR-27b-5p 0 0 1
chr19:580395|580771 hsa-miR-27b-3p 0 0 1
chr19:580395|580771 hsa-miR-326 0 0 1
chr19:580395|580771 hsa-miR-345-5p 0 0 1
chr19:580395|580771 hsa-miR-345-3p 0 0 1
chr19:580395|580771 hsa-miR-552-5p 0 0 1
chr19:580395|580771 hsa-miR-552-3p 0 0 1
chr19:580395|580771 hsa-miR-564 0 0 1
chr19:580395|580771 hsa-miR-604 0 0 1
chr19:580395|580771 hsa-miR-634 0 0 1
chr19:580395|580771 hsa-miR-643 0 0 1
chr19:580395|580771 hsa-miR-647 0 0 1
chr19:580395|580771 hsa-miR-760 0 0 1
chr19:580395|580771 hsa-miR-1205 0 0 1
chr19:580395|580771 hsa-miR-1286 0 0 1
chr19:580395|580771 hsa-miR-1287-5p 0 0 1
chr19:580395|580771 hsa-miR-1287-3p 0 0 1
chr19:580395|580771 hsa-miR-1291 1 0 1
chr19:580395|580771 hsa-miR-542-5p 0 0 1
chr19:580395|580771 hsa-miR-331-3p 0 0 1
chr19:580395|580771 hsa-miR-513a-5p 0 0 1
chr19:580395|580771 hsa-miR-455-5p 0 0 1
chr19:580395|580771 hsa-miR-338-3p 0 0 1
chr19:580395|580771 hsa-miR-330-5p 0 0 1
chr19:580395|580771 hsa-miR-542-3p 0 0 1
chr19:580395|580771 hsa-miR-7 0 0 1
chr19:580395|580771 hsa-miR-1254 0 0 1
chr19:580395|580771 hsa-miR-1245 0 0 1
chr19:580395|580771 hsa-miR-484 0 1 0
chr19:580395|580771 hsa-miR-661 0 1 0
chr19:580395|580771 hsa-miR-762 1 0 0
chr19:580395|580771 hsa-miR-1245a 0 1 0
chr19:580395|580771 hsa-miR-3175 1 0 0
chr19:580395|580771 hsa-miR-4314 0 1 0
chr19:580395|580771 hsa-miR-4270 0 1 0
chr19:580395|580771 hsa-miR-3660 0 1 0
chr19:580395|580771 hsa-miR-4418 0 1 0
chr19:580395|580771 hsa-miR-3689c 0 1 0
chr19:580395|580771 hsa-miR-4487 0 1 0
chr19:580395|580771 hsa-miR-4510 0 1 0
chr19:580395|580771 hsa-miR-4522 1 0 0
chr19:580395|580771 hsa-miR-4526 0 1 0
chr19:580395|580771 hsa-miR-4674 1 0 0
chr19:580395|580771 hsa-miR-4675 1 0 0
chr19:580395|580771 hsa-miR-4706 1 0 0
chr19:580395|580771 hsa-miR-4739 1 0 0
chr19:580395|580771 hsa-miR-4779 0 1 0
chr19:580395|580771 hsa-miR-6081 0 1 0
chr19:580395|580771 hsa-miR-6084 1 0 0
chr19:580395|580771 hsa-miR-6090 1 0 0
chr19:580395|580771 hsa-miR-6133 0 1 0
chr19:580395|580771 hsa-miR-8073 0 1 0
chr19:580395|580771 hsa-miR-12115 1 0 0
chr19:580395|580771 hsa-miR-4747-3p 0 1 0
chr19:580395|580771 hsa-miR-4687-3p 0 1 0
chr19:580395|580771 hsa-miR-6799-5p 1 0 0
chr19:580395|580771 hsa-miR-6510-5p 0 1 0
chr19:580395|580771 hsa-miR-766-5p 0 1 0
chr19:580395|580771 hsa-miR-6804-5p 0 1 0
chr19:580395|580771 hsa-miR-3192-5p 0 1 0
chr19:580395|580771 hsa-miR-7847-3p 1 0 0
chr19:580395|580771 hsa-miR-4722-5p 1 0 0
chr19:580395|580771 hsa-miR-5589-5p 0 1 0
chr19:580395|580771 hsa-miR-4697-3p 0 1 0
chr19:580395|580771 hsa-miR-6805-5p 0 1 0
chr19:580395|580771 hsa-miR-6798-5p 0 1 0
chr19:580395|580771 hsa-miR-6760-5p 0 1 0
chr19:580395|580771 hsa-miR-6874-5p 0 1 0
chr19:580395|580771 hsa-miR-5008-5p 0 1 0
chr19:580395|580771 hsa-miR-5088-5p 1 0 0
chr19:580395|580771 hsa-miR-7109-5p 1 0 0
chr19:580395|580771 hsa-miR-6763-3p 0 1 0
chr19:580395|580771 hsa-miR-7108-3p 0 1 0
chr19:580395|580771 hsa-miR-4707-3p 0 1 0
chr19:580395|580771 hsa-miR-1229-5p 1 0 0
chr19:580395|580771 hsa-miR-6784-5p 0 1 0
chr19:580395|580771 hsa-miR-4640-5p 0 1 0
chr19:580395|580771 hsa-miR-3127-5p 0 1 0
chr19:580395|580771 hsa-miR-6749-5p 1 0 0
chr19:580395|580771 hsa-miR-149-3p 1 0 0
chr19:580395|580771 hsa-miR-6824-5p 1 0 0
chr19:580395|580771 hsa-miR-3162-5p 0 1 0
chr19:580395|580771 hsa-miR-6886-5p 0 1 0
chr19:580395|580771 hsa-miR-4707-5p 0 1 0
chr19:580395|580771 hsa-miR-7112-3p 1 0 0
chr19:580395|580771 hsa-miR-3614-3p 0 1 0
chr19:580395|580771 hsa-miR-7113-5p 0 1 0
chr19:580395|580771 hsa-miR-6795-3p 0 1 0
chr19:580395|580771 hsa-miR-6729-3p 0 1 0
chr19:580395|580771 hsa-miR-514a-5p 0 1 0
chr19:580395|580771 hsa-miR-1273h-5p 0 1 0
chr19:580395|580771 hsa-miR-3689b-3p 0 1 0
chr19:580395|580771 hsa-miR-6778-5p 0 1 0
chr19:580395|580771 hsa-miR-6812-5p 1 0 0
chr19:580395|580771 hsa-miR-6865-5p 0 1 0
chr19:580395|580771 hsa-miR-1343-5p 1 0 0
chr19:580395|580771 hsa-miR-6752-5p 1 0 0
chr19:580395|580771 hsa-miR-6815-5p 0 1 0
chr19:580395|580771 hsa-miR-6819-5p 1 0 0
chr19:580395|580771 hsa-miR-11181-3p 1 0 0
chr19:580395|580771 hsa-miR-6722-3p 1 0 0
chr19:580395|580771 hsa-miR-6779-5p 0 1 0
chr19:580395|580771 hsa-miR-6780a-5p 0 1 0
chr19:580395|580771 hsa-miR-7111-5p 1 0 0
chr19:580395|580771 hsa-miR-4728-5p 1 0 0
chr19:580395|580771 hsa-miR-6780b-5p 1 0 0
chr19:580395|580771 hsa-miR-1909-3p 0 1 0
chr19:580395|580771 hsa-miR-328-5p 1 0 0
chr19:580395|580771 hsa-miR-3689a-3p 0 1 0
chr19:580395|580771 hsa-miR-4685-5p 1 0 0
chr19:580395|580771 hsa-miR-4726-5p 0 1 0
chr19:580395|580771 hsa-miR-6777-5p 1 0 0
chr19:580395|580771 hsa-miR-6887-5p 1 0 0
chr19:580395|580771 hsa-miR-6889-5p 0 1 0
chr19:580395|580771 hsa-miR-6845-5p 0 1 0
chr19:580395|580771 hsa-miR-939-5p 1 0 0
chr19:580395|580771 hsa-miR-3085-5p 1 0 0
chr19:580395|580771 hsa-miR-6856-5p 1 0 0
chr19:580395|580771 hsa-miR-3116 0 1 0
chr19:580395|580771 hsa-miR-3184-5p 1 0 0
chr19:580395|580771 hsa-miR-10400-3p 0 1 0
chr19:580395|580771 hsa-miR-3085-3p 0 1 0
chr19:580395|580771 hsa-miR-10394-5p 0 1 0
chr19:580395|580771 hsa-miR-6827-3p 0 1 0
chr19:580395|580771 hsa-miR-6506-5p 0 1 0
chr19:580395|580771 hsa-miR-301a-5p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:580395|580771
ORF Type ORF1
Protein Length 103
Nucleotide Length 312
Protein Sequence MGTANIQLHGESCSQGYRAPPTVGRSCWPEAPGTSQSPGPLLPGGEQPSCGRPGMGAGLRFQAPLSHPPVRASQSEGCEVVRTHQRGGDGHAGLQVRVRATCH
Nucleotide Sequence ATGGGCACGGCCAACATCCAGCTCCACGGTGAGTCCTGCAGCCAGGGGTACCGGGCACCACCGACTGTCGGGAGAAGTTGTTGGCCTGAGGCACCCGGCACATCCCAGAGCCCTGGCCCCCTGCTCCCTGGAGGGGAACAGCCCTCCTGCGGGAGGCCGGGGATGGGGGCGGGCCTGCGGTTCCAGGCTCCTCTCTCTCACCCTCCTGTCAGGGCCTCCCAGAGTGAAGGCTGTGAAGTCGTCAGAACACATCAACGAGGGGGAGACGGCCATGCTGGTCTGCAAGTCAGAGTCCGTGCCACCTGTCACTGA
CircID chr19:580395|580771
ORF Type ORF2
Protein Length 91
Nucleotide Length 273
Protein Sequence MSGEVVGLRHPAHPRALAPCSLEGNSPPAGGRGWGRACGSRLLSLTLLSGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITD
Nucleotide Sequence CTGTCGGGAGAAGTTGTTGGCCTGAGGCACCCGGCACATCCCAGAGCCCTGGCCCCCTGCTCCCTGGAGGGGAACAGCCCTCCTGCGGGAGGCCGGGGATGGGGGCGGGCCTGCGGTTCCAGGCTCCTCTCTCTCACCCTCCTGTCAGGGCCTCCCAGAGTGAAGGCTGTGAAGTCGTCAGAACACATCAACGAGGGGGAGACGGCCATGCTGGTCTGCAAGTCAGAGTCCGTGCCACCTGTCACTGACTGGGCCTGGTACAAGATCACTGAC
CircID chr19:580395|580771
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MREAGDGGGPAVPGSSLSPSCQGLPE
Nucleotide Sequence CTGCGGGAGGCCGGGGATGGGGGCGGGCCTGCGGTTCCAGGCTCCTCTCTCTCACCCTCCTGTCAGGGCCTCCCAGAGTGA
CircID chr19:580395|580771
ORF Type ORF4
Protein Length 26
Nucleotide Length 78
Protein Sequence MQDSPWSWMLAVPMGSGRKTQEYSPH
Nucleotide Sequence CTGCAGGACTCACCGTGGAGCTGGATGTTGGCCGTGCCCATGGGCTCGGGGAGGAAGACGCAGGAGTACTCTCCCCAC
CircID chr19:580395|580771
ORF Type ORF5
Protein Length 47
Nucleotide Length 141
Protein Sequence MCRVPQANNFSRQSVVPGTPGCRTHRGAGCWPCPWARGGRRRSTLPT
Nucleotide Sequence ATGTGCCGGGTGCCTCAGGCCAACAACTTCTCCCGACAGTCGGTGGTGCCCGGTACCCCTGGCTGCAGGACTCACCGTGGAGCTGGATGTTGGCCGTGCCCATGGGCTCGGGGAGGAAGACGCAGGAGTACTCTCCCCACT
CircID chr19:580395|580771
ORF Type ORF6
Protein Length 122
Nucleotide Length 366
Protein Sequence MYQAQSVTGGTDSDLQTSMAVSPSLMCSDDFTAFTLGGPDRRVRERSLEPQARPHPRPPAGGLFPSREQGARALGCAGCLRPTTSPDSRWCPVPLAAGLTVELDVGRAHGLGEEDAGVLSPL
Nucleotide Sequence TTGTACCAGGCCCAGTCAGTGACAGGTGGCACGGACTCTGACTTGCAGACCAGCATGGCCGTCTCCCCCTCGTTGATGTGTTCTGACGACTTCACAGCCTTCACTCTGGGAGGCCCTGACAGGAGGGTGAGAGAGAGGAGCCTGGAACCGCAGGCCCGCCCCCATCCCCGGCCTCCCGCAGGAGGGCTGTTCCCCTCCAGGGAGCAGGGGGCCAGGGCTCTGGGATGTGCCGGGTGCCTCAGGCCAACAACTTCTCCCGACAGTCGGTGGTGCCCGGTACCCCTGGCTGCAGGACTCACCGTGGAGCTGGATGTTGGCCGTGCCCATGGGCTCGGGGAGGAAGACGCAGGAGTACTCTCCCCACTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab