CircRNA Information

General Information
circRNA Basic Information
CircID chr19:58212736|58212914
Strand -
CircType exon
Host Gene ENSG00000171606.16;
Algorism CIRI2;
Sequence CCAAGATACTTTTCTGTGCATAAGAAAATCCATACCGGAGAGAGGCCCTATGTGTGTCAAGACTGTGGGAAAGGATTTGTTCAGAGCTCTTCCCTCACACAGCATCAGAGAGTTCATTCTGGAGAGAGACCATTTGAATGTCAGGAGTGTGGGAGGACCTTCAATGATCGCTCAGCCAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:58212736|58212914 hsa-miR-181c-5p 0 0 1
chr19:58212736|58212914 hsa-miR-181c-3p 0 0 1
chr19:58212736|58212914 hsa-miR-493-5p 0 0 1
chr19:58212736|58212914 hsa-miR-493-3p 0 0 1
chr19:58212736|58212914 hsa-miR-181d-5p 0 0 1
chr19:58212736|58212914 hsa-miR-181d-3p 0 0 1
chr19:58212736|58212914 hsa-miR-522-5p 0 0 1
chr19:58212736|58212914 hsa-miR-522-3p 0 0 1
chr19:58212736|58212914 hsa-miR-607 0 0 1
chr19:58212736|58212914 hsa-miR-1296-5p 0 0 1
chr19:58212736|58212914 hsa-miR-1296-3p 0 0 1
chr19:58212736|58212914 hsa-miR-766-5p 0 0 1
chr19:58212736|58212914 hsa-miR-766-3p 0 0 1
chr19:58212736|58212914 hsa-miR-1290 0 0 1
chr19:58212736|58212914 hsa-miR-1294 0 0 1
chr19:58212736|58212914 hsa-miR-548l 0 0 1
chr19:58212736|58212914 hsa-miR-1246 0 0 1
chr19:58212736|58212914 hsa-miR-548n 0 0 1
chr19:58212736|58212914 hsa-miR-532-3p 0 1 1
chr19:58212736|58212914 hsa-miR-501-5p 0 0 1
chr19:58212736|58212914 hsa-miR-188-3p 0 0 1
chr19:58212736|58212914 hsa-miR-483-3p 0 0 1
chr19:58212736|58212914 hsa-miR-502-3p 0 0 1
chr19:58212736|58212914 hsa-miR-501-3p 0 0 1
chr19:58212736|58212914 hsa-miR-876-5p 0 0 1
chr19:58212736|58212914 hsa-miR-491-3p 0 0 1
chr19:58212736|58212914 hsa-miR-105 0 0 1
chr19:58212736|58212914 hsa-miR-1260 0 0 1
chr19:58212736|58212914 hsa-miR-181a 0 0 1
chr19:58212736|58212914 hsa-miR-181b 0 0 1
chr19:58212736|58212914 hsa-miR-500 0 0 1
chr19:58212736|58212914 hsa-miR-514 0 0 1
chr19:58212736|58212914 hsa-miR-3139 0 1 0
chr19:58212736|58212914 hsa-miR-3183 0 1 0
chr19:58212736|58212914 hsa-miR-4512 0 1 0
chr19:58212736|58212914 hsa-miR-4656 1 0 0
chr19:58212736|58212914 hsa-miR-4663 0 1 0
chr19:58212736|58212914 hsa-miR-4730 1 0 0
chr19:58212736|58212914 hsa-miR-6077 0 1 0
chr19:58212736|58212914 hsa-miR-6749-3p 0 1 0
chr19:58212736|58212914 hsa-miR-3692-3p 0 1 0
chr19:58212736|58212914 hsa-miR-6834-5p 0 1 0
chr19:58212736|58212914 hsa-miR-378a-5p 0 1 0
chr19:58212736|58212914 hsa-miR-6895-5p 1 0 0
chr19:58212736|58212914 hsa-miR-3158-3p 1 0 0
chr19:58212736|58212914 hsa-miR-6719-3p 0 1 0
chr19:58212736|58212914 hsa-miR-6818-5p 0 1 0
chr19:58212736|58212914 hsa-miR-6797-5p 0 1 0
chr19:58212736|58212914 hsa-miR-6744-3p 0 1 0
chr19:58212736|58212914 hsa-miR-7-1-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


circRNA Open Reading Frame (ORF)
CircID chr19:58212736|58212914
ORF Type ORF1
Protein Length 55
Nucleotide Length 165
Protein Sequence MCIRKSIPERGPMCVKTVGKDLFRALPSHSIREFILERDHLNVRSVGGPSMIAQP
Nucleotide Sequence CTGTGCATAAGAAAATCCATACCGGAGAGAGGCCCTATGTGTGTCAAGACTGTGGGAAAGGATTTGTTCAGAGCTCTTCCCTCACACAGCATCAGAGAGTTCATTCTGGAGAGAGACCATTTGAATGTCAGGAGTGTGGGAGGACCTTCAATGATCGCTCAGCCA

CircID chr19:58212736|58212914
ORF Type ORF2
Protein Length 48
Nucleotide Length 144
Protein Sequence MTFKWSLSRMNSLMLCEGRALNKSFPTVLTHIGPLSGMDFLMHRKVSW
Nucleotide Sequence CTGACATTCAAATGGTCTCTCTCCAGAATGAACTCTCTGATGCTGTGTGAGGGAAGAGCTCTGAACAAATCCTTTCCCACAGTCTTGACACACATAGGGCCTCTCTCCGGTATGGATTTTCTTATGCACAGAAAAGTATCTTGG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites