CircRNA Information

General Information
circRNA Basic Information
CircID chr19:583273|583416
Strand -
CircType exon
Host Gene ENSG00000172270.17;
Algorism CIRI2;
Sequence AGCCTCAAGTCACTCCCAAGCCCCCTCCTTGTCTGTGCATCCGGGGGCAGCTCTGGAGGGGGTTTGCTGGGGAACTGGCGCCATCGCCGGGACTCCAGAACCGCAGAAGCCTCCCCAGCTCACCCCTGGAGGACGGCCGGCTCT
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:583273|583416 hsa-miR-22-5p 0 0 1
chr19:583273|583416 hsa-miR-22-3p 0 0 1
chr19:583273|583416 hsa-miR-545-5p 0 0 1
chr19:583273|583416 hsa-miR-545-3p 0 0 1
chr19:583273|583416 hsa-miR-558 0 0 1
chr19:583273|583416 hsa-miR-652-5p 0 0 1
chr19:583273|583416 hsa-miR-652-3p 0 0 1
chr19:583273|583416 hsa-miR-939-5p 0 0 1
chr19:583273|583416 hsa-miR-939-3p 0 0 1
chr19:583273|583416 hsa-miR-1299 0 0 1
chr19:583273|583416 hsa-miR-1304-5p 0 0 1
chr19:583273|583416 hsa-miR-1304-3p 0 0 1
chr19:583273|583416 hsa-miR-485-5p 0 0 1
chr19:583273|583416 hsa-miR-1289 0 0 1
chr19:583273|583416 hsa-miR-525-5p 0 0 1
chr19:583273|583416 hsa-miR-566 0 0 1
chr19:583273|583416 hsa-miR-324-3p 0 0 1
chr19:583273|583416 hsa-miR-520a-5p 0 0 1
chr19:583273|583416 hsa-miR-516b 0 0 1
chr19:583273|583416 hsa-miR-3188 0 1 0
chr19:583273|583416 hsa-miR-4449 0 1 0
chr19:583273|583416 hsa-miR-4462 1 1 0
chr19:583273|583416 hsa-miR-4469 0 1 0
chr19:583273|583416 hsa-miR-4487 1 0 0
chr19:583273|583416 hsa-miR-4537 1 0 0
chr19:583273|583416 hsa-miR-4734 1 0 0
chr19:583273|583416 hsa-miR-4741 1 0 0
chr19:583273|583416 hsa-miR-4785 1 0 0
chr19:583273|583416 hsa-miR-8062 0 1 0
chr19:583273|583416 hsa-miR-152-5p 0 1 0
chr19:583273|583416 hsa-miR-3150a-3p 0 1 0
chr19:583273|583416 hsa-miR-145-5p 0 1 0
chr19:583273|583416 hsa-miR-6840-5p 0 1 0
chr19:583273|583416 hsa-miR-6829-5p 1 0 0
chr19:583273|583416 hsa-miR-6805-5p 0 1 0
chr19:583273|583416 hsa-miR-6782-5p 0 1 0
chr19:583273|583416 hsa-miR-6781-5p 1 0 0
chr19:583273|583416 hsa-miR-1307-3p 0 1 0
chr19:583273|583416 hsa-miR-584-3p 0 1 0
chr19:583273|583416 hsa-miR-6887-3p 0 1 0
chr19:583273|583416 hsa-miR-6812-5p 1 1 0
chr19:583273|583416 hsa-miR-6754-5p 0 1 0
chr19:583273|583416 hsa-miR-6756-5p 1 0 0
chr19:583273|583416 hsa-miR-6846-5p 0 1 0
chr19:583273|583416 hsa-miR-6848-5p 0 1 0
chr19:583273|583416 hsa-miR-3198 0 1 0
chr19:583273|583416 hsa-miR-6891-5p 0 1 0
chr19:583273|583416 hsa-miR-4691-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:583273|583416
ORF Type ORF1
Protein Length 27
Nucleotide Length 81
Protein Sequence MLGNWRHRRDSRTAEASPAHPWRTAGS
Nucleotide Sequence TTGCTGGGGAACTGGCGCCATCGCCGGGACTCCAGAACCGCAGAAGCCTCCCCAGCTCACCCCTGGAGGACGGCCGGCTCT
CircID chr19:583273|583416
ORF Type ORF2
Protein Length 38
Nucleotide Length 114
Protein Sequence MSVHPGAALEGVCWGTGAIAGTPEPQKPPQLTPGGRPA
Nucleotide Sequence TTGTCTGTGCATCCGGGGGCAGCTCTGGAGGGGGTTTGCTGGGGAACTGGCGCCATCGCCGGGACTCCAGAACCGCAGAAGCCTCCCCAGCTCACCCCTGGAGGACGGCCGGCT
CircID chr19:583273|583416
ORF Type ORF3
Protein Length 37
Nucleotide Length 111
Protein Sequence MCIRGQLWRGFAGELAPSPGLQNRRSLPSSPLEDGRL
Nucleotide Sequence CTGTGCATCCGGGGGCAGCTCTGGAGGGGGTTTGCTGGGGAACTGGCGCCATCGCCGGGACTCCAGAACCGCAGAAGCCTCCCCAGCTCACCCCTGGAGGACGGCCGGCTC
CircID chr19:583273|583416
ORF Type ORF4
Protein Length 32
Nucleotide Length 96
Protein Sequence MESRRWRQFPSKPPPELPPDAQTRRGLGSDLR
Nucleotide Sequence CTGGAGTCCCGGCGATGGCGCCAGTTCCCCAGCAAACCCCCTCCAGAGCTGCCCCCGGATGCACAGACAAGGAGGGGGCTTGGGAGTGACTTGAGG
CircID chr19:583273|583416
ORF Type ORF5
Protein Length 37
Nucleotide Length 114
Protein Sequence MGRLLRFWSPGDGASSPANPLQSCPRMHRQGGGLGVT
Nucleotide Sequence CTGGGGAGGCTTCTGCGGTTCTGGAGTCCCGGCGATGGCGCCAGTTCCCCAGCAAACCCCCTCCAGAGCTGCCCCCGGATGCACAGACAAGGAGGGGGCTTGGGAGTGACTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab