CircRNA Information

General Information
circRNA Basic Information
CircID chr19:58393105|58393452
Strand -
CircType exon
Host Gene ENSG00000083845.7;
Algorism CIRI2;
Sequence GGCCGCAACAACGGCAAGAAGCTCATGACTGTGCGCATCGTCAAGCATGCCTTCGAGATCATACACCTGCTCACAGGCGAGGTAGGGCTCTGTGGCCTGGTGAGGGCAGGCTGTGCCCTCAGTACACCCGAAAGCCCCACGGAGTGTATGTCAGGCTTATCCCCTGTGTGGTGTGGTCACTCTTGTTTTAGGTATGAGGAAAGGGGAGGAATGCATGGGGCTGGATGTCAGGCTCATATCCCCCTTCTCTCTAGAACCCTCTGCAGGTCCTGGTGAACGCCATCATCAACAGTGGTCCCCGGGAGGACTCCACACGCATTGGGCGCGCCGGGACTGTGAGACGACAGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:58393105|58393452 hsa-miR-27a-5p 0 0 1
chr19:58393105|58393452 hsa-miR-27a-3p 0 0 1
chr19:58393105|58393452 hsa-miR-197-5p 0 0 1
chr19:58393105|58393452 hsa-miR-197-3p 0 0 1
chr19:58393105|58393452 hsa-miR-27b-5p 0 0 1
chr19:58393105|58393452 hsa-miR-27b-3p 0 0 1
chr19:58393105|58393452 hsa-miR-489-5p 0 0 1
chr19:58393105|58393452 hsa-miR-489-3p 0 0 1
chr19:58393105|58393452 hsa-miR-492 0 1 1
chr19:58393105|58393452 hsa-miR-586 0 0 1
chr19:58393105|58393452 hsa-miR-596 0 1 1
chr19:58393105|58393452 hsa-miR-1226-5p 0 0 1
chr19:58393105|58393452 hsa-miR-1226-3p 0 0 1
chr19:58393105|58393452 hsa-miR-1238-5p 0 0 1
chr19:58393105|58393452 hsa-miR-1238-3p 0 0 1
chr19:58393105|58393452 hsa-miR-1208 0 1 1
chr19:58393105|58393452 hsa-miR-1267 0 0 1
chr19:58393105|58393452 hsa-miR-1289 0 0 1
chr19:58393105|58393452 hsa-miR-556-5p 0 0 1
chr19:58393105|58393452 hsa-miR-518d-5p 0 1 1
chr19:58393105|58393452 hsa-miR-519b-5p 0 1 1
chr19:58393105|58393452 hsa-miR-519c-5p 0 1 1
chr19:58393105|58393452 hsa-miR-520c-5p 0 1 1
chr19:58393105|58393452 hsa-miR-342-3p 0 0 1
chr19:58393105|58393452 hsa-miR-1233 0 0 1
chr19:58393105|58393452 hsa-miR-128 0 0 1
chr19:58393105|58393452 hsa-miR-220c 0 0 1
chr19:58393105|58393452 hsa-miR-526a 0 0 1
chr19:58393105|58393452 hsa-miR-3154 0 1 0
chr19:58393105|58393452 hsa-miR-4293 0 1 0
chr19:58393105|58393452 hsa-miR-3909 1 0 0
chr19:58393105|58393452 hsa-miR-3911 1 1 0
chr19:58393105|58393452 hsa-miR-4449 1 1 0
chr19:58393105|58393452 hsa-miR-4525 0 1 0
chr19:58393105|58393452 hsa-miR-451b 1 0 0
chr19:58393105|58393452 hsa-miR-5193 0 1 0
chr19:58393105|58393452 hsa-miR-103a-2-5p 0 1 0
chr19:58393105|58393452 hsa-miR-4433b-3p 1 0 0
chr19:58393105|58393452 hsa-miR-6749-3p 0 1 0
chr19:58393105|58393452 hsa-miR-15a-3p 0 1 0
chr19:58393105|58393452 hsa-miR-4700-3p 1 0 0
chr19:58393105|58393452 hsa-miR-1233-3p 0 1 0
chr19:58393105|58393452 hsa-miR-6881-3p 0 1 0
chr19:58393105|58393452 hsa-miR-1236-5p 1 0 0
chr19:58393105|58393452 hsa-miR-3934-5p 0 1 0
chr19:58393105|58393452 hsa-miR-6746-5p 1 0 0
chr19:58393105|58393452 hsa-miR-3677-5p 1 0 0
chr19:58393105|58393452 hsa-miR-6840-5p 1 0 0
chr19:58393105|58393452 hsa-miR-4655-5p 1 0 0
chr19:58393105|58393452 hsa-miR-3189-5p 1 1 0
chr19:58393105|58393452 hsa-miR-6849-3p 0 1 0
chr19:58393105|58393452 hsa-miR-6783-5p 1 0 0
chr19:58393105|58393452 hsa-miR-6742-5p 1 0 0
chr19:58393105|58393452 hsa-miR-6716-5p 1 0 0
chr19:58393105|58393452 hsa-miR-6768-5p 0 1 0
chr19:58393105|58393452 hsa-miR-6798-5p 1 0 0
chr19:58393105|58393452 hsa-miR-6760-5p 0 1 0
chr19:58393105|58393452 hsa-miR-2467-3p 0 1 0
chr19:58393105|58393452 hsa-miR-4783-5p 1 1 0
chr19:58393105|58393452 hsa-miR-7111-3p 0 1 0
chr19:58393105|58393452 hsa-miR-4733-3p 0 1 0
chr19:58393105|58393452 hsa-miR-3616-3p 0 1 0
chr19:58393105|58393452 hsa-miR-6719-3p 0 1 0
chr19:58393105|58393452 hsa-miR-670-3p 0 1 0
chr19:58393105|58393452 hsa-miR-3124-3p 0 1 0
chr19:58393105|58393452 hsa-miR-4717-5p 0 1 0
chr19:58393105|58393452 hsa-miR-4685-5p 0 1 0
chr19:58393105|58393452 hsa-miR-4745-5p 1 0 0
chr19:58393105|58393452 hsa-miR-6794-5p 1 1 0
chr19:58393105|58393452 hsa-miR-3198 1 1 0
chr19:58393105|58393452 hsa-miR-6758-5p 0 1 0
chr19:58393105|58393452 hsa-miR-6891-5p 1 0 0
chr19:58393105|58393452 hsa-miR-518e-5p 0 1 0
chr19:58393105|58393452 hsa-miR-518f-5p 0 1 0
chr19:58393105|58393452 hsa-miR-519a-5p 0 1 0
chr19:58393105|58393452 hsa-miR-522-5p 0 1 0
chr19:58393105|58393452 hsa-miR-523-5p 0 1 0
chr19:58393105|58393452 hsa-miR-526a-5p 0 1 0
chr19:58393105|58393452 hsa-miR-6837-5p 0 1 0
chr19:58393105|58393452 hsa-miR-1234-3p 1 0 0
chr19:58393105|58393452 hsa-miR-412-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:58393105|58393452
ORF Type ORF1
Protein Length 83
Nucleotide Length 252
Protein Sequence MTVRIVKHAFEIIHLLTGEVGLCGLVRAGCALSTPESPTECMSGLSPVWCGHSCFRYEERGGMHGAGCQAHIPLLSRTLCRSW
Nucleotide Sequence ATGACTGTGCGCATCGTCAAGCATGCCTTCGAGATCATACACCTGCTCACAGGCGAGGTAGGGCTCTGTGGCCTGGTGAGGGCAGGCTGTGCCCTCAGTACACCCGAAAGCCCCACGGAGTGTATGTCAGGCTTATCCCCTGTGTGGTGTGGTCACTCTTGTTTTAGGTATGAGGAAAGGGGAGGAATGCATGGGGCTGGATGTCAGGCTCATATCCCCCTTCTCTCTAGAACCCTCTGCAGGTCCTGGTGA
CircID chr19:58393105|58393452
ORF Type ORF2
Protein Length 61
Nucleotide Length 183
Protein Sequence MCGVVTLVLGMRKGEECMGLDVRLISPFSLEPSAGPGERHHQQWSPGGLHTHWARRDCETT
Nucleotide Sequence CTGTGTGGTGTGGTCACTCTTGTTTTAGGTATGAGGAAAGGGGAGGAATGCATGGGGCTGGATGTCAGGCTCATATCCCCCTTCTCTCTAGAACCCTCTGCAGGTCCTGGTGAACGCCATCATCAACAGTGGTCCCCGGGAGGACTCCACACGCATTGGGCGCGCCGGGACTGTGAGACGACA
CircID chr19:58393105|58393452
ORF Type ORF3
Protein Length 33
Nucleotide Length 102
Protein Sequence MWPGEGRLCPQYTRKPHGVYVRLIPCVVWSLLF
Nucleotide Sequence CTGTGGCCTGGTGAGGGCAGGCTGTGCCCTCAGTACACCCGAAAGCCCCACGGAGTGTATGTCAGGCTTATCCCCTGTGTGGTGTGGTCACTCTTGTTTTAG
CircID chr19:58393105|58393452
ORF Type ORF4
Protein Length 29
Nucleotide Length 87
Protein Sequence MQVLVNAIINSGPREDSTRIGRAGTVRRQ
Nucleotide Sequence CTGCAGGTCCTGGTGAACGCCATCATCAACAGTGGTCCCCGGGAGGACTCCACACGCATTGGGCGCGCCGGGACTGTGAGACGACAG
CircID chr19:58393105|58393452
ORF Type ORF5
Protein Length 26
Nucleotide Length 81
Protein Sequence MSLTSSPMHSSPFLIPKTRVTTPHRG
Nucleotide Sequence ATGAGCCTGACATCCAGCCCCATGCATTCCTCCCCTTTCCTCATACCTAAAACAAGAGTGACCACACCACACAGGGGATAA
CircID chr19:58393105|58393452
ORF Type ORF6
Protein Length 37
Nucleotide Length 114
Protein Sequence LSSHSPGAPNACGVLPGTTVDDGVHQDLQRVLERRGI
Nucleotide Sequence CTGTCGTCTCACAGTCCCGGCGCGCCCAATGCGTGTGGAGTCCTCCCGGGGACCACTGTTGATGATGGCGTTCACCAGGACCTGCAGAGGGTTCTAGAGAGAAGGGGGATATGA
CircID chr19:58393105|58393452
ORF Type ORF7
Protein Length 40
Nucleotide Length 120
Protein Sequence MRAQPALTRPQSPTSPVSRCMISKACLTMRTVMSFLPLLR
Nucleotide Sequence CTGAGGGCACAGCCTGCCCTCACCAGGCCACAGAGCCCTACCTCGCCTGTGAGCAGGTGTATGATCTCGAAGGCATGCTTGACGATGCGCACAGTCATGAGCTTCTTGCCGTTGTTGCGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab