CircRNA Information

General Information
circRNA Basic Information
CircID chr19:58545452|58545824
Strand -
CircType exon
Host Gene ENSG00000130726.10;
Algorism CIRI2;
Sequence AGTGCTTCTCCAAAGACATCGTGGAGAATTATTTCATGCGTGATAGTGGCAGCAAGGCTGCCACCGACGCCCAGGATGCGAACCAGGTGCGTCCTATCTCAGCAACCACAAGGAGGTTTCTGGGGAGGGGGCATCTGCGCAGGAGGAGCTTGGCACCAGCTCCAGGCTGTTACTCCACTTTCCCAAGGCTCTGGGTGGGCTGCCTAGGTTGGGTCAAGGGACCAATCTTAAATCTCCGGTTGTATTTTCTGGGATGTAAACGTGGATCTATCAAGTTGTCTTGCCTTCTCTGACCCTGCCTTTGTCTGGCAGTGCTGCACTAGCTGTGAGGATAATGCCCCAGCCACCAGCTACTGTGTGGAGTGCTCGGAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:58545452|58545824 hsa-miR-31-5p 0 0 1
chr19:58545452|58545824 hsa-miR-31-3p 0 0 1
chr19:58545452|58545824 hsa-miR-107 0 0 1
chr19:58545452|58545824 hsa-miR-130a-5p 0 0 1
chr19:58545452|58545824 hsa-miR-130a-3p 0 0 1
chr19:58545452|58545824 hsa-miR-301a-5p 0 0 1
chr19:58545452|58545824 hsa-miR-301a-3p 0 0 1
chr19:58545452|58545824 hsa-miR-130b-5p 0 0 1
chr19:58545452|58545824 hsa-miR-130b-3p 0 0 1
chr19:58545452|58545824 hsa-miR-133b 0 1 1
chr19:58545452|58545824 hsa-miR-511-5p 0 0 1
chr19:58545452|58545824 hsa-miR-511-3p 0 0 1
chr19:58545452|58545824 hsa-miR-585-5p 0 0 1
chr19:58545452|58545824 hsa-miR-585-3p 0 0 1
chr19:58545452|58545824 hsa-miR-620 0 0 1
chr19:58545452|58545824 hsa-miR-623 0 0 1
chr19:58545452|58545824 hsa-miR-454-5p 0 0 1
chr19:58545452|58545824 hsa-miR-454-3p 0 0 1
chr19:58545452|58545824 hsa-miR-802 0 0 1
chr19:58545452|58545824 hsa-miR-301b-5p 0 0 1
chr19:58545452|58545824 hsa-miR-301b-3p 0 0 1
chr19:58545452|58545824 hsa-miR-940 0 0 1
chr19:58545452|58545824 hsa-miR-1270 0 0 1
chr19:58545452|58545824 hsa-miR-486-3p 0 0 1
chr19:58545452|58545824 hsa-miR-615-3p 0 0 1
chr19:58545452|58545824 hsa-miR-885-3p 0 0 1
chr19:58545452|58545824 hsa-miR-509-3p 0 0 1
chr19:58545452|58545824 hsa-miR-628-5p 0 0 1
chr19:58545452|58545824 hsa-miR-1207-5p 0 0 1
chr19:58545452|58545824 hsa-miR-515-5p 0 0 1
chr19:58545452|58545824 hsa-miR-103 0 0 1
chr19:58545452|58545824 hsa-miR-9 0 0 1
chr19:58545452|58545824 hsa-miR-138 0 0 1
chr19:58545452|58545824 hsa-miR-1268 0 0 1
chr19:58545452|58545824 hsa-miR-1254 0 0 1
chr19:58545452|58545824 hsa-miR-768-5p 0 0 1
chr19:58545452|58545824 hsa-miR-549 0 0 1
chr19:58545452|58545824 hsa-miR-133a 0 0 1
chr19:58545452|58545824 hsa-miR-194 0 0 1
chr19:58545452|58545824 hsa-miR-661 1 0 0
chr19:58545452|58545824 hsa-miR-1256 0 1 0
chr19:58545452|58545824 hsa-miR-3153 0 1 0
chr19:58545452|58545824 hsa-miR-4313 0 1 0
chr19:58545452|58545824 hsa-miR-4254 0 1 0
chr19:58545452|58545824 hsa-miR-4268 0 1 0
chr19:58545452|58545824 hsa-miR-4486 0 1 0
chr19:58545452|58545824 hsa-miR-4780 0 1 0
chr19:58545452|58545824 hsa-miR-5787 1 1 0
chr19:58545452|58545824 hsa-miR-6080 0 1 0
chr19:58545452|58545824 hsa-miR-9903 0 1 0
chr19:58545452|58545824 hsa-miR-12115 0 1 0
chr19:58545452|58545824 hsa-miR-12117 0 1 0
chr19:58545452|58545824 hsa-miR-138-5p 0 1 0
chr19:58545452|58545824 hsa-miR-4687-3p 1 0 0
chr19:58545452|58545824 hsa-miR-6089 1 0 0
chr19:58545452|58545824 hsa-miR-769-5p 0 1 0
chr19:58545452|58545824 hsa-miR-1178-5p 0 1 0
chr19:58545452|58545824 hsa-miR-6770-5p 1 1 0
chr19:58545452|58545824 hsa-miR-6874-5p 0 1 0
chr19:58545452|58545824 hsa-miR-4793-5p 0 1 0
chr19:58545452|58545824 hsa-miR-3189-3p 0 1 0
chr19:58545452|58545824 hsa-miR-660-3p 0 1 0
chr19:58545452|58545824 hsa-miR-6804-3p 0 1 0
chr19:58545452|58545824 hsa-miR-3944-5p 0 1 0
chr19:58545452|58545824 hsa-miR-6887-3p 0 1 0
chr19:58545452|58545824 hsa-miR-1180-5p 1 0 0
chr19:58545452|58545824 hsa-miR-383-3p 1 1 0
chr19:58545452|58545824 hsa-miR-6801-5p 0 1 0
chr19:58545452|58545824 hsa-miR-2355-5p 0 1 0
chr19:58545452|58545824 hsa-miR-503-3p 1 0 0
chr19:58545452|58545824 hsa-miR-6770-3p 1 0 0
chr19:58545452|58545824 hsa-miR-4645-3p 0 1 0
chr19:58545452|58545824 hsa-miR-4714-3p 0 1 0
chr19:58545452|58545824 hsa-miR-133a-3p 0 1 0
chr19:58545452|58545824 hsa-miR-4763-3p 1 0 0
chr19:58545452|58545824 hsa-miR-6769b-5p 1 0 0
chr19:58545452|58545824 hsa-miR-6787-5p 1 1 0
chr19:58545452|58545824 hsa-miR-6893-5p 0 1 0
chr19:58545452|58545824 hsa-miR-6775-5p 1 0 0
chr19:58545452|58545824 hsa-miR-6808-5p 1 1 0
chr19:58545452|58545824 hsa-miR-6879-5p 1 0 0
chr19:58545452|58545824 hsa-miR-4685-5p 1 1 0
chr19:58545452|58545824 hsa-miR-6758-5p 0 1 0
chr19:58545452|58545824 hsa-miR-6855-5p 1 0 0
chr19:58545452|58545824 hsa-miR-6791-5p 1 0 0
chr19:58545452|58545824 hsa-miR-6783-3p 0 1 0
chr19:58545452|58545824 hsa-miR-6848-3p 0 1 0
chr19:58545452|58545824 hsa-miR-10397-5p 0 1 0
chr19:58545452|58545824 hsa-miR-6764-5p 0 1 0
chr19:58545452|58545824 hsa-miR-4690-3p 0 1 0
chr19:58545452|58545824 hsa-miR-9902 0 1 0
chr19:58545452|58545824 hsa-miR-1912-3p 0 1 0
chr19:58545452|58545824 hsa-miR-3136-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:58545452|58545824
ORF Type ORF1
Protein Length 49
Nucleotide Length 150
Protein Sequence MPPTPRMRTRCVLSQQPQGGFWGGGICAGGAWHQLQAVTPLSQGSGWAA
Nucleotide Sequence CTGCCACCGACGCCCAGGATGCGAACCAGGTGCGTCCTATCTCAGCAACCACAAGGAGGTTTCTGGGGAGGGGGCATCTGCGCAGGAGGAGCTTGGCACCAGCTCCAGGCTGTTACTCCACTTTCCCAAGGCTCTGGGTGGGCTGCCTAG
CircID chr19:58545452|58545824
ORF Type ORF2
Protein Length 30
Nucleotide Length 93
Protein Sequence MLLHFPKALGGLPRLGQGTNLKSPVVFSGM
Nucleotide Sequence CTGTTACTCCACTTTCCCAAGGCTCTGGGTGGGCTGCCTAGGTTGGGTCAAGGGACCAATCTTAAATCTCCGGTTGTATTTTCTGGGATGTAA
CircID chr19:58545452|58545824
ORF Type ORF3
Protein Length 31
Nucleotide Length 93
Protein Sequence MPSLTLPLSGSAALAVRIMPQPPATVWSARS
Nucleotide Sequence TTGCCTTCTCTGACCCTGCCTTTGTCTGGCAGTGCTGCACTAGCTGTGAGGATAATGCCCCAGCCACCAGCTACTGTGTGGAGTGCTCGGAGC
CircID chr19:58545452|58545824
ORF Type ORF4
Protein Length 85
Nucleotide Length 258
Protein Sequence MRDSGSKAATDAQDANQVRPISATTRRFLGRGHLRRRSLAPAPGCYSTFPRLWVGCLGWVKGPILNLRLYFLGCKRGSIKLSCLL
Nucleotide Sequence ATGCGTGATAGTGGCAGCAAGGCTGCCACCGACGCCCAGGATGCGAACCAGGTGCGTCCTATCTCAGCAACCACAAGGAGGTTTCTGGGGAGGGGGCATCTGCGCAGGAGGAGCTTGGCACCAGCTCCAGGCTGTTACTCCACTTTCCCAAGGCTCTGGGTGGGCTGCCTAGGTTGGGTCAAGGGACCAATCTTAAATCTCCGGTTGTATTTTCTGGGATGTAAACGTGGATCTATCAAGTTGTCTTGCCTTCTCTGA
CircID chr19:58545452|58545824
ORF Type ORF5
Protein Length 34
Nucleotide Length 105
Protein Sequence MIDPRLHPRKYNRRFKIGPLTQPRQPTQSLGKVE
Nucleotide Sequence TTGATAGATCCACGTTTACATCCCAGAAAATACAACCGGAGATTTAAGATTGGTCCCTTGACCCAACCTAGGCAGCCCACCCAGAGCCTTGGGAAAGTGGAGTAA
CircID chr19:58545452|58545824
ORF Type ORF6
Protein Length 37
Nucleotide Length 114
Protein Sequence MRRCPLPRNLLVVAEIGRTWFASWASVAALLPLSRMK
Nucleotide Sequence CTGCGCAGATGCCCCCTCCCCAGAAACCTCCTTGTGGTTGCTGAGATAGGACGCACCTGGTTCGCATCCTGGGCGTCGGTGGCAGCCTTGCTGCCACTATCACGCATGAAATAA
CircID chr19:58545452|58545824
ORF Type ORF7
Protein Length 30
Nucleotide Length 93
Protein Sequence MGKWSNSLELVPSSSCADAPSPETSLWLLR
Nucleotide Sequence TTGGGAAAGTGGAGTAACAGCCTGGAGCTGGTGCCAAGCTCCTCCTGCGCAGATGCCCCCTCCCCAGAAACCTCCTTGTGGTTGCTGAGATAG
CircID chr19:58545452|58545824
ORF Type ORF8
Protein Length 40
Nucleotide Length 123
Protein Sequence MVAGALSSQLVQHCQTKAGSEKARQLDRSTFTSQKIQPEI
Nucleotide Sequence CTGGTGGCTGGGGCATTATCCTCACAGCTAGTGCAGCACTGCCAGACAAAGGCAGGGTCAGAGAAGGCAAGACAACTTGATAGATCCACGTTTACATCCCAGAAAATACAACCGGAGATTTAA
CircID chr19:58545452|58545824
ORF Type ORF9
Protein Length 28
Nucleotide Length 84
Protein Sequence MVRILGVGGSLAATITHEIILHDVFGEA
Nucleotide Sequence CTGGTTCGCATCCTGGGCGTCGGTGGCAGCCTTGCTGCCACTATCACGCATGAAATAATTCTCCACGATGTCTTTGGAGAAGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab